BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0344.p (655 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport... 235 2e-61 alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 235 2e-61 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 233 1e-60 DR1035 [E] COG0411 ABC-type branched-chain amino acid transport ... 231 4e-60 PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ... 228 4e-59 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 223 8e-58 Cj1015c [E] COG0411 ABC-type branched-chain amino acid transport... 218 3e-56 DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 217 7e-56 STM3561 [E] COG0411 ABC-type branched-chain amino acid transport... 215 3e-55 SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ... 215 3e-55 >RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/252 (47%), Positives = 167/252 (66%) Query: 391 TLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVE 450 LL + + +FGGL+AL+ V L++R+G ++GLIGPNG+GK+T NV+TG+Y P G Sbjct: 5 NLLSIRGVNKRFGGLQALSDVSLEIREGEIYGLIGPNGAGKTTFFNVITGLYTPDAGEFV 64 Query: 451 YDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRY 510 G+P +A G+ARTFQN++LFG+MTA ENV+VG H + ++ + T Sbjct: 65 LAGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAAENVMVGRHVRTKAGLIGAVFRTKAA 124 Query: 511 VREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAG 570 EE + + A +L++VG+ AN ARNL YG QR LEI RAL P LL LDEPAAG Sbjct: 125 REEEASIEDWAHDLLDYVGIGKYANYTARNLSYGHQRRLEIARALATQPKLLALDEPAAG 184 Query: 571 LTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + A + EL ++ KIR G TI+LIEH + +VM +C+ +TVLD+G+ IA+G P +VQ++ Sbjct: 185 MNATEKVELRGLLDKIRSDGKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPHEVQSN 244 Query: 631 PKVIEAYLGSGA 642 VIEAYLG+ A Sbjct: 245 QAVIEAYLGASA 256 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 168/255 (65%), Gaps = 1/255 (0%) Query: 387 DAGATLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTD 446 D +L+ + +FGGL A+N V V + GLIGPNG+GK+T+ N++T + P+ Sbjct: 4 DKSRVILEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSS 63 Query: 447 GVVEYDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMAN 506 G + Y + I+ P IA G+ARTFQN++LFGE++A ENV++ H S + + Sbjct: 64 GELIYQNKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHLHTKSTIFTGVLG 123 Query: 507 TPRYVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDE 566 P +EE +RE+A +LE VGL++ A E+ARN YG QR LEI RAL L P +LLLDE Sbjct: 124 LPPAPKEESRSREKALELLEMVGLSDRAQEKARNFAYGDQRRLEIARALALEPQILLLDE 183 Query: 567 PAAGLTAPDIKELVAIIRKIREA-GITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPA 625 PAAG+ + ++L IR+IR+ +TIILIEHH+ +VM +CD + VLDFGQ IA G+P+ Sbjct: 184 PAAGMNPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGLCDRIAVLDFGQLIALGEPS 243 Query: 626 QVQADPKVIEAYLGS 640 V+ DP VIEAYLG+ Sbjct: 244 VVRNDPAVIEAYLGN 258 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/268 (45%), Positives = 175/268 (65%), Gaps = 20/268 (7%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 LL ++ + MQFGGL A++ ++R+G + GLIGPNG+GK+T+ NV+TGIY PT G + + Sbjct: 11 LLLLDHVTMQFGGLVAVDDFTNEIREGELVGLIGPNGAGKTTVFNVITGIYTPTKGRIVF 70 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVD---VMANTP 508 + I+G P I G+ARTFQN++LF +MT ENVLV HH ++ D V P Sbjct: 71 NDIDITGLRPYQITHLGIARTFQNIRLFSDMTVLENVLVAQHHVLSNPDADRILVKHGKP 130 Query: 509 R----------------YVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIG 552 R Y+++E+ ERA +++ VGL + E+A +LPYG+QR LEI Sbjct: 131 RKGHGRFWFWRAVTKIGYLKKEKEMVERAKDLIKRVGLEKVMYEKASSLPYGEQRKLEIA 190 Query: 553 RALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIREA-GITIILIEHHMDVVMSICDTVT 611 RAL P L+LLDEPAAG+ + ++L+ I++IR+ +T++LIEH M VVM IC+ + Sbjct: 191 RALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERII 250 Query: 612 VLDFGQKIAEGKPAQVQADPKVIEAYLG 639 V+D+G+ IAEG P ++Q DP+VIEAYLG Sbjct: 251 VMDYGRIIAEGTPKEIQNDPRVIEAYLG 278 >DR1035 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 279 Score = 231 bits (589), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/254 (45%), Positives = 167/254 (65%), Gaps = 1/254 (0%) Query: 390 ATLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVV 449 A LL V + FGGL A+N V V + + +IGPNG+GK+T N++TGIY P G V Sbjct: 16 APLLDVQHLTKSFGGLTAVNDVTFQVPERRIISVIGPNGAGKTTFFNLITGIYAPDRGTV 75 Query: 450 EYDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPR 509 GR + G P + G++RTFQN++LF MTA EN+++G D + +T R Sbjct: 76 NLAGRSLVGLRPDQVVEAGISRTFQNIRLFPSMTAEENIMLGRGVRLRGGFWDSVLHTAR 135 Query: 510 YVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAA 569 + ++E+ AR A +L+FVGL+ E + NLPYG QR LEI RAL P L+LLDEPAA Sbjct: 136 FQKDEEEARNTARLMLDFVGLSKWRGELSTNLPYGDQRKLEIARALATTPKLILLDEPAA 195 Query: 570 GLTAPDIKELVAIIRKIR-EAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQ 628 G+ + ++L A+IR IR E G+T++LIEH M +VM++ + +TVL++G K+AEG P +++ Sbjct: 196 GMNPRETEDLKALIRAIRDELGVTVVLIEHDMRLVMTLSENITVLNYGSKLAEGLPHEIR 255 Query: 629 ADPKVIEAYLGSGA 642 +P+V+ AYLGSGA Sbjct: 256 NNPEVMTAYLGSGA 269 >PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Pae Pseudomonas aeruginosa Length = 255 Score = 228 bits (580), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 120/250 (48%), Positives = 163/250 (65%), Gaps = 1/250 (0%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 +L+V+ + M+FGGL A+N V+L V + V +IGPNG+GK+T+ N LTG Y+PT G++ Sbjct: 5 ILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRL 64 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRYV 511 DG I G IA GV RTFQNV+LF EMTA EN+LV H N+N + + TP + Sbjct: 65 DGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFR 124 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 R E+ A E AA LE V L AN A L YG+QR LEI R + P +L+LDEPAAGL Sbjct: 125 RSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGL 184 Query: 572 TAPDIKELVAIIRKIR-EAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + +L A+I K+R E +T++LIEH M +VMSI D + V++ G +A+G P Q++ + Sbjct: 185 NPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDN 244 Query: 631 PKVIEAYLGS 640 P VI+AYLG Sbjct: 245 PDVIKAYLGE 254 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 259 Score = 223 bits (569), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 164/249 (65%), Gaps = 3/249 (1%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 +L+ + +FGGL A+N V DVR+G + GLIGPNG+GK+T+ N++TG+ P+ G + Sbjct: 11 ILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLTS 70 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRYV 511 G+ ++G P +A G++RTFQN++LF ++A ENV V H ++ + + R Sbjct: 71 RGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIFGADRA- 129 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 EE+ RA +L+ VGL++ A E A N YG QR LEI RAL P +LLLDEPAAG+ Sbjct: 130 -EERQVERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGM 188 Query: 572 TAPDIKELVAIIRKIREA-GITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + +L A IR++R+ +T++LIEHH+ +VM +CD V VL+FG+ IA G PA VQ D Sbjct: 189 NTAEKGQLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRD 248 Query: 631 PKVIEAYLG 639 PKVIEAYLG Sbjct: 249 PKVIEAYLG 257 >Cj1015c [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Cje Campylobacter jejuni Length = 256 Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 157/250 (62%), Gaps = 1/250 (0%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 +L++ QI FG +KA+N + +G + LIGPNG+GK+T+ N++TG Y+P+ G VE+ Sbjct: 2 ILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTLFNIITGNYKPSSGSVEF 61 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRYV 511 G I P I G+ARTFQN++LF M ENVL+G + N+ + + R+ Sbjct: 62 LGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGFNKQMKYNIFEAFLHLGRFG 121 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 + EQ +E+A AILE +G+A A E+A +L YG+QR +EI RA+ P LLLLDEPAAG+ Sbjct: 122 KIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVEIARAMATQPRLLLLDEPAAGM 181 Query: 572 TAPDIKELVAIIRKIR-EAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + + EL +I K+R + I+++LIEH M V +CD V VLD+G+ I EGK Sbjct: 182 NSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLCDRVLVLDYGKTIFEGKLCDAVNH 241 Query: 631 PKVIEAYLGS 640 +VI AYLG Sbjct: 242 KEVIAAYLGD 251 >DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 271 Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/253 (48%), Positives = 173/253 (68%), Gaps = 4/253 (1%) Query: 389 GATLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGV 448 G+ +LKV + QFGGLKA+N V DV G + GLIGPNG+GKSTM N++TG+ T G Sbjct: 20 GSPILKVRNAVKQFGGLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGVNPATSGT 79 Query: 449 VEYDGRPISGNVPS-AIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANT 507 VE G +G +P+ AI GVARTFQ+V+LF E++ EN ++G + + ++ M + Sbjct: 80 VEVLGHD-AGRLPARAIHRLGVARTFQHVKLFPELSLLENTMMGGYARGQAGLLRSMLHL 138 Query: 508 PRYVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEP 567 R EE A + A LE VGL+ A E+A NL G+QRLLEI RAL +PS LLLDEP Sbjct: 139 ERG--EEAALQGLALTQLERVGLSEQAYEQAGNLALGQQRLLEIARALVADPSFLLLDEP 196 Query: 568 AAGLTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQV 627 AAGL + +EL ++RK+R+ G+TI+++EH MD+VM++ D + V++ GQ++A+G P QV Sbjct: 197 AAGLRFGEKQELATLLRKLRDEGVTILIVEHDMDLVMNLVDRLVVMNSGQELAQGSPQQV 256 Query: 628 QADPKVIEAYLGS 640 +++P V EAYLG+ Sbjct: 257 RSNPAVREAYLGA 269 >STM3561 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 255 Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/250 (45%), Positives = 156/250 (62%), Gaps = 1/250 (0%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 LL VN ++M+FGGL A+N V L++R+ + LIGPNG+GK+T+ N LTG Y+PT G + Sbjct: 5 LLAVNGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTITL 64 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRYV 511 R + G IA GV RTFQ+V+LF EMT EN+LV H + + + TP + Sbjct: 65 RERHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 R + A +RAA LE +GL AN +A NL YG QR LEI R + P +L+LDEPAAGL Sbjct: 125 RAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGL 184 Query: 572 TAPDIKELVAIIRKIR-EAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + KEL +I ++R TI+LIEH M +VM I D + V++ G +A G P +++ + Sbjct: 185 NPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244 Query: 631 PKVIEAYLGS 640 P VI AYLG Sbjct: 245 PDVIRAYLGE 254 >SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 254 Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 108/252 (42%), Positives = 163/252 (64%), Gaps = 1/252 (0%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 LL+V Q+ FGGL A+ V L++ +G + GLIGPNG+GK+T+ N+LTG+Y P++G V Sbjct: 3 LLEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTL 62 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMANTPRYV 511 DG ++G P IA G+ RTFQN++LF ++T +NVL+ + +V P + Sbjct: 63 DGHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRLPAFY 122 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 + E+ + +A +L+ L A A+NL YG+QR LEI RAL P +L LDEPAAG+ Sbjct: 123 KSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRRLEIVRALATEPKILFLDEPAAGM 182 Query: 572 TAPDIKELVAIIRKIR-EAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQAD 630 + EL +IR+I+ E ITI+LIEH M++VM + + + VL++G+ IA+G P +++ + Sbjct: 183 NPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDEIKTN 242 Query: 631 PKVIEAYLGSGA 642 +VIEAYLG A Sbjct: 243 KRVIEAYLGGEA 254