BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0332.p (213 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum 229 4e-60 XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c 161 1e-39 SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti 158 9e-39 NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 155 5e-38 NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 153 3e-37 mll1358 [C] COG0839 NADH Mlo Mesorhizobium loti 153 3e-37 AGc2357 [C] COG0839 NADH Atu Agrobacterium tumefaciens strain C5... 152 5e-37 BMEI1149 [C] COG0839 NADH Bme Brucella melitensis 135 6e-32 CC1941 [C] COG0839 NADH Ccr Caulobacter vibrioides 132 8e-31 RP790 [C] COG0839 NADH Rpr Rickettsia prowazekii 124 2e-28 >RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum Length = 210 Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/190 (61%), Positives = 152/190 (80%), Gaps = 4/190 (2%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 +FY F+++LV++A++VITA+NPVHAALFLVLSFF+AA IWMLLKAEFLAI LVLVYVGAV Sbjct: 7 IFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFW---TPETQVPA 117 MVLFLFVVMM+D++++ LR FW Y P+ A +G +I++EMA VL ++F P ++P Sbjct: 67 MVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQPVQELPK 126 Query: 118 ASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVK 177 A T+ LGKLI+T+Y+YAFE+A +LL+AIVAAVALT R+RKDSK + A ++V+ Sbjct: 127 ALSG-PNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVADQIRVQ 185 Query: 178 ASDRVRLVSM 187 DRVRLVSM Sbjct: 186 RKDRVRLVSM 195 >XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c Length = 222 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/217 (46%), Positives = 141/217 (64%), Gaps = 12/217 (5%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+F+ + V AA VI+ R+PV+A L L+L+FFS A IW+L+ AEFL + LVLVYVGAVM Sbjct: 9 FYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLVLVYVGAVM 68 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMA---AVLLRSFWTP---ETQV 115 VLFLFVVMMLDI+ +LREG+ Y P+ + +++++M V +R TP + Sbjct: 69 VLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQMVVLIGVKMR-MATPFPVDNAA 127 Query: 116 PAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVK 175 A+ T T L +FT++++ FE AAVIL VA++AAV LTLRKR+ K DP++ + Sbjct: 128 AQAAHTSNLTW-LAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKTQDPSQQTR 186 Query: 176 VKASDRVRLVSMKAESTRNEPPADAAAAADKPAAGQQ 212 VKA+DR+R+VSM E EP A +D Q+ Sbjct: 187 VKAADRLRIVSMPTE----EPVAVVPIRSDTNNDAQE 219 >SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti Length = 204 Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 130/193 (67%), Gaps = 7/193 (3%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+FA I V +A VI ARNPV++ LFL+L+FF+AAG+++L AEFLA++L++VYVGAV Sbjct: 8 FYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLVVYVGAVA 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ------V 115 VLFLFVVMMLDI+ +LR G Y P+ A IG+I+ E+ V+ S ++PE + Sbjct: 68 VLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGGSAFSPEIAKGIAMPI 127 Query: 116 PAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVK 175 PA S+ T LG +++T YVY F+IA ++LLVA++ A+ LTLR R++ K + V Sbjct: 128 PAPSERT-NTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQSIPQQVA 186 Query: 176 VKASDRVRLVSMK 188 V +V++K Sbjct: 187 RTPETAVEVVTVK 199 >NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 Length = 223 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 148/218 (67%), Gaps = 18/218 (8%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY+FAVI++ A++ +TA+NPVHAAL LVL+F +A +WML++AEFL + LV+VYVGAV Sbjct: 7 LFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVVVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPET------- 113 MVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L+ P+T Sbjct: 67 MVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILV----NPKTDLAAFGL 122 Query: 114 --QVPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPA 171 +PA + + + LG I+T+Y+ FE+AAV+LL+ +VAA+AL RK + K DPA Sbjct: 123 MKDIPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPA 179 Query: 172 KAVKVKASD-RVRLVSMKAESTRNEPPADAAAAAD-KP 207 VKV+A R+RLV M+A + E ++ + D KP Sbjct: 180 DQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKP 217 >NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 Length = 223 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 148/218 (67%), Gaps = 18/218 (8%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY+FAVI++ A++ +TA+NPVHAAL LVL+F +A +WML++AEFL + LV+VYVGAV Sbjct: 7 LFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVVVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPET------- 113 MVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L+ P+T Sbjct: 67 MVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILV----NPKTDLAAFGL 122 Query: 114 --QVPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPA 171 +PA + + + LG I+T+Y+ FE+AAV+LL+ +VAA+AL RK + K DPA Sbjct: 123 MKDIPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRMDPA 179 Query: 172 KAVKVKASD-RVRLVSMKAESTRNEPPADAAAAAD-KP 207 VKV+A R+RLV M+A + E ++ + D KP Sbjct: 180 DQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDDLKP 217 >mll1358 [C] COG0839 NADH Mlo Mesorhizobium loti Length = 206 Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 120/170 (70%), Gaps = 5/170 (2%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+FA + V +A VI++RNPVH+ LFL+L+FF+AAG++ML AEFLA++L++VYVGAVM Sbjct: 10 FYLFAFVAVASAFMVISSRNPVHSVLFLILTFFNAAGLFMLTGAEFLAMILLVVYVGAVM 69 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD- 120 VLFLFVVMMLD++ +++EG Y P+ A +G+I+ E+ VL + P+ + Sbjct: 70 VLFLFVVMMLDVDFAEMKEGALQYAPIGALVGLILAAELIIVLGGYTFAPKLAATVSKPI 129 Query: 121 ----TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSK 166 T T LG +++T+Y+Y F+I+ +ILLVA++ A+ LTLR ++ K Sbjct: 130 PDLATRSNTAALGDILYTDYLYYFQISGLILLVAMIGAIVLTLRHKEGVK 179 >AGc2357 [C] COG0839 NADH Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 204 Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 124/193 (64%), Gaps = 7/193 (3%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+FA + V +A VI ++NPVH+ LFL+L+FF+AA +++L AEFLA++L++VYVGAV Sbjct: 8 FYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVA 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTP------ETQV 115 VLFLFVVMMLD++ +LR G Y P+ A IGVI+ E+ V+ S P + Sbjct: 68 VLFLFVVMMLDVDFAELRSGVLQYAPIGALIGVILAAELIVVVGGSMLNPIAAKSITMPI 127 Query: 116 PAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVK 175 P A++ T LG +++T YVY F++A ++LLVA++ A+ LTLR R D K D + V Sbjct: 128 PPAAERT-NTAALGDVLYTNYVYFFQLAGLVLLVAMIGAIVLTLRHRTDIKRQDISTQVG 186 Query: 176 VKASDRVRLVSMK 188 V V +K Sbjct: 187 RDPKTAVTTVKVK 199 >BMEI1149 [C] COG0839 NADH Bme Brucella melitensis Length = 189 Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 113/163 (69%), Gaps = 6/163 (3%) Query: 9 LVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVMVLFLFVV 68 ++ +A VI ARNPVH+ LFL+L+FF+AA +++L AEFLA++L++VYVGAV VLFLFVV Sbjct: 1 MIASAFMVIAARNPVHSVLFLILTFFNAAALFLLTGAEFLAMILLVVYVGAVAVLFLFVV 60 Query: 69 MMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ-----VPAASDTLG 123 MMLD++ +L+ G Y P+ A +G+I++ E+ V +TP+ +P + T Sbjct: 61 MMLDVDFAELKRGALQYAPVGALVGLILLGELIFVFASRMFTPKLGQGALPIPDVA-TRT 119 Query: 124 QTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSK 166 T LG +++T YV+ F++A ++LLVA++ A+ LT+R + + K Sbjct: 120 NTAALGDILYTHYVFYFQVAGLVLLVAMIGAIVLTMRHKPNVK 162 >CC1941 [C] COG0839 NADH Ccr Caulobacter vibrioides Length = 205 Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 130/198 (65%), Gaps = 4/198 (2%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+ A + + A + V++ARNPVH+ LFL+ +FFSAAG+++LL AEFLA++LV+VYVGAV Sbjct: 8 FYLLAFVTIAAGLLVVSARNPVHSVLFLITAFFSAAGLFVLLGAEFLAMLLVVVYVGAVA 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEM---AAVLLRSFWTPETQVPAA 118 VLFLFVVMMLD++ +LR+GF Y P I ++I +EM A + + + +P A Sbjct: 68 VLFLFVVMMLDVDFAELRQGFVQYLPFGGLIALVIAIEMVMVVAAVATNGAAAKNPLPNA 127 Query: 119 S-DTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVK 177 S + T+ +G++++T+YV+ F++A ++LLVA++ A+ LTLR + K D K V Sbjct: 128 SPGGVPNTEAIGRVLYTDYVFFFQLAGLVLLVAMIGAIVLTLRHKPGVKRQDIGKQVART 187 Query: 178 ASDRVRLVSMKAESTRNE 195 + LV +K +E Sbjct: 188 PKTGMELVQIKPGEGISE 205 >RP790 [C] COG0839 NADH Rpr Rickettsia prowazekii Length = 205 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 118/190 (62%), Gaps = 19/190 (10%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FY+F +++I+++ V+ ++N V++ L+L+ +F + +G+ +LL AEFLA++L+++YVGAV Sbjct: 5 FYLFTTLIIISSLCVVLSKNSVYSVLWLIFTFINGSGLMILLGAEFLAMLLIVIYVGAVA 64 Query: 62 VLFLFVVMMLDINMD----KLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPA 117 VLFLFV+MMLDIN + KLRE ++ + I L M A L+ + + Sbjct: 65 VLFLFVIMMLDINFNQAITKLRENL--------SLSIFITLIMFADLVITIILSTKNINY 116 Query: 118 AS-------DTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDP 170 +S + + TK +G +++TE++ F+IA +IL VA+++ + LTL+KR K+ D Sbjct: 117 SSNISFAIANNISNTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDI 176 Query: 171 AKAVKVKASD 180 K + S+ Sbjct: 177 RKQLSHNKSN 186