BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0331.p (162 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ral... 295 2e-80 NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Nei... 243 1e-64 NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Nei... 243 1e-64 XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xyle... 227 7e-60 SMc01922 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Sme Si... 203 1e-52 AGc2355 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Atu Agr... 202 3e-52 BMEI1150 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Bme Br... 201 7e-52 mll1359 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Mlo Mes... 197 6e-51 RC1229 Non COG 194 8e-50 RP795 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rpr Ricke... 193 1e-49 >RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ralstonia solanacearum Length = 163 Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 140/160 (87%), Positives = 153/160 (95%) Query: 3 AIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEER 62 AIK+FF SL+L+ELFKGLALTGRYLF RKITV FPEEKTP+SPRFRGLHALRRYPNGEER Sbjct: 4 AIKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEER 63 Query: 63 CIACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHI 122 CIACKLCEAVCPA+AITIES+QR DGTRRT+RYDIDLTKCIFCGFCEE+CPVD+IVETHI Sbjct: 64 CIACKLCEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 123 LEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 LEYHGEKRGDLY+TK+MLLAVGDR+E EIAA +AADA YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163 >NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Neisseria meningitidis MC58 Length = 159 Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 114/159 (71%), Positives = 131/159 (82%) Query: 4 IKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 63 + + + +L EL KG+ +T + F RK T+ FPEEKTP S RFRGLHA RRYPNGEERC Sbjct: 1 MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60 Query: 64 IACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123 IACKLCEAVCPAMAI IESE+R DGTRRT RYDIDLTKCIFCGFCEE+CP D+IVETHI Sbjct: 61 IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120 Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 EYHGEK+GDL+ TK +LLA+GD+YE EIA +AADA YR Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Neisseria meningitidis Z2491 Length = 159 Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 114/159 (71%), Positives = 131/159 (82%) Query: 4 IKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 63 + + + +L EL KG+ +T + F RK T+ FPEEKTP S RFRGLHA RRYPNGEERC Sbjct: 1 MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60 Query: 64 IACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123 IACKLCEAVCPAMAI IESE+R DGTRRT RYDIDLTKCIFCGFCEE+CP D+IVETHI Sbjct: 61 IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120 Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 EYHGEK+GDL+ TK +LLA+GD+YE EIA +AADA YR Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xylella fastidiosa 9a5c Length = 163 Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 119/162 (73%), Positives = 133/162 (82%) Query: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 M + +F SL+L EL GL LT +Y F+ K TV +P EK P SPRFRGLHALRRYPNGE Sbjct: 2 MNRVMHYFKSLLLLELLAGLWLTLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGE 61 Query: 61 ERCIACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVET 120 ERCIACKLCEAVCPA+AITI+S +R DGTRRT+RYDIDL KCIFCGFCEESCPVDSIVET Sbjct: 62 ERCIACKLCEAVCPALAITIDSAKREDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVET 121 Query: 121 HILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 HILEYH EKRG+ TK LLA+GDR+E EIA RAADAA+R Sbjct: 122 HILEYHFEKRGENIVTKPQLLAIGDRFEAEIAERRAADAAFR 163 >SMc01922 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Sme Sinorhizobium meliloti Length = 164 Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/163 (60%), Positives = 119/163 (73%), Gaps = 1/163 (0%) Query: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 M + + SL L+E L+ RY F+ K T+ +P EK P+SPRFRG HALRRYPNGE Sbjct: 2 MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 61 Query: 61 ERCIACKLCEAVCPAMAITIES-EQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119 ERCIACKLCEA+CPA AITIE+ +R DGTRRT RYDID+ KCI+CGFC+E+CPVD+IVE Sbjct: 62 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121 Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 E+ E R +LYY KE LLA GDR+E EIA A D+ YR Sbjct: 122 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 164 >AGc2355 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 163 Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 98/163 (60%), Positives = 120/163 (73%), Gaps = 1/163 (0%) Query: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 M ++ SL L+E + LT R+ FK+K T+ +P EK P+SPRFRG HALRRYPNGE Sbjct: 1 MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAVCPAMAITIES-EQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119 ERCIACKLCEA+CPA AITIE+ +R DGTRRT RYDID+ KCI+CGFC+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 E+ E R +LY+ K+ LL GDR+E EIA A DA YR Sbjct: 121 GPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDAPYR 163 >BMEI1150 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Bme Brucella melitensis Length = 163 Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 99/163 (60%), Positives = 118/163 (72%), Gaps = 1/163 (0%) Query: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 M +I SL+L+E AL+ R F K T+ +P EK P+SPRFRG HALRRYPNGE Sbjct: 1 MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAVCPAMAITIES-EQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119 ERCIACKLCEA+CPA AITIE+ +R DGTRRT RYDID+ KCI+CGFC+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 E+ E R +LYY K+ LLA GD +E EIA A DA YR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDHWEREIARNIAMDAPYR 163 >mll1359 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Mlo Mesorhizobium loti Length = 164 Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 96/163 (58%), Positives = 118/163 (72%), Gaps = 1/163 (0%) Query: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 M A+ SL+L++ L+ R F K T+ +P EK P+SPRFRG HALRRYPNGE Sbjct: 2 MSALSQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPVSPRFRGEHALRRYPNGE 61 Query: 61 ERCIACKLCEAVCPAMAITIES-EQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119 ERCIACKLCEA+CPA AITIE+ +R DGTRRT RYDID+ KCI+CGFC+E+CPVD+IVE Sbjct: 62 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121 Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 E+ E R +LYY K+ LLA GDR+E E+A + DA YR Sbjct: 122 GPNFEFATETREELYYDKDKLLANGDRWERELARNISLDAPYR 164 >RC1229 Non COG Length = 159 Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 115/157 (73%) Query: 6 DFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERCIA 65 ++ S L E+ +G+ LT +Y FK K+T+ +P EK+P+SPRF+G HALRRY NGEERCIA Sbjct: 3 NYLKSFFLYEIVRGMVLTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERCIA 62 Query: 66 CKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHILEY 125 CKLCEA+CPA AI IE+++R DG+RRT+RYDID+TKCI+CG C+E+CPVD+IVE E+ Sbjct: 63 CKLCEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEF 122 Query: 126 HGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 L Y KE LL GDR+E +A+ D YR Sbjct: 123 ASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >RP795 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rpr Rickettsia prowazekii Length = 159 Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 114/157 (72%) Query: 6 DFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERCIA 65 ++ S L E+ +G+ LT +Y FK K+T+ +P EK+P+SPRF+G HALRRY NGEERCIA Sbjct: 3 NYLKSFFLYEIIRGMTLTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERCIA 62 Query: 66 CKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHILEY 125 CKLCEA+CPA AI IES++R DG+RRT+RYDID+TKCI+CG C+E+CPVD+IVE E+ Sbjct: 63 CKLCEAICPAQAIVIESDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEF 122 Query: 126 HGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 L Y KE LL GD++E +A D YR Sbjct: 123 ASLTHTALIYDKERLLNNGDKWEQALANKLHKDYQYR 159