BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0318.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstoni... 238 4e-63 ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia... 207 2e-53 ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichi... 207 2e-53 ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escheric... 207 2e-53 STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonel... 205 4e-53 NMA0028 [E] COG2049 Allophanate hydrolase subunit 1 NmA Neisseri... 204 1e-52 NMB0230 [E] COG2049 Allophanate hydrolase subunit 1 Nme Neisseri... 203 2e-52 HI1731 [E] COG2049 Allophanate hydrolase subunit 1 Hin Haemophil... 198 6e-51 RSp0939 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstoni... 190 2e-48 PAB1713 [E] COG2049 Allophanate hydrolase subunit 1 Pab Pyrococc... 168 6e-42 >RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstonia solanacearum Length = 215 Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 141/198 (71%), Gaps = 1/198 (0%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 +P PATL QQRIWA+A A +W V +VVPGMNNLTL+ P D L + W + Sbjct: 17 VPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFG-PQADAQALTALLREAWQE 75 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 + G+ ++I V YGG GPDL +VA HTGLS EV+ RH+ EY+VYFLGFLPGFA Sbjct: 76 SGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFA 135 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 YMGGLD SLATPR PR+++PAGSVGIGGEQTG+YP ASPGGWQL+GRT LF P ++ Sbjct: 136 YMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRD 195 Query: 181 PPTLLRPGDRVRFTVERV 198 PP LL PGDR+RF +V Sbjct: 196 PPALLAPGDRIRFVASKV 213 >ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia coli K12 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escherichia coli O157:H7 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonella typhimurium LT2 Length = 218 Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/198 (52%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW L + V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPITLASQKRIWRLTQRLVDMPNVVEAIPGMNNITVILREPQTLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R+VEIPV+YGG+ GPDL VARH+GLS ++V+ H++ EYVV+FLGF PGF Sbjct: 77 ESEALEPDSRSVEIPVIYGGAGGPDLAAVARHSGLSEKQVVELHASVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L PR PR+ +PAGSVGIGG QTG+YP+++PGGWQLIG T L+LFDP + Sbjct: 137 PYLGNLPEPLHMPRRAEPRLQVPAGSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDPMR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 E P LLRPGD VRF ++ Sbjct: 197 ETPVLLRPGDSVRFVPQK 214 >NMA0028 [E] COG2049 Allophanate hydrolase subunit 1 NmA Neisseria meningitidis Z2491 Length = 215 Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/198 (52%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 L AP+ L +QQ++WA A GQ + + EVV GMNNLT+ T R DL LA ++ W Sbjct: 17 LNAPSELGKQQKLWAFAAALGQHDRIEEVVVGMNNLTVFT-RFDTDLATLADELQYVWEH 75 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 + G+ VEIPV YGG GPDL VA E++ RH+ Y V+ +GF PGF Sbjct: 76 TAVTDHQGKLVEIPVCYGGEYGPDLAEVAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFP 135 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 Y+GGL +L TPR PR S+PAGSVGIGG QTGVYP ASPGGWQ+IGRT L LF Sbjct: 136 YLGGLPEALHTPRRAVPRTSVPAGSVGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLN 195 Query: 181 PPTLLRPGDRVRFTVERV 198 PPTLL GD+VRF ER+ Sbjct: 196 PPTLLAAGDQVRFVAERI 213 >NMB0230 [E] COG2049 Allophanate hydrolase subunit 1 Nme Neisseria meningitidis MC58 Length = 215 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 104/198 (52%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 L AP+ L +QQ++WA A GQ + + EVV GMNNLT+ T R DL LA ++ W Sbjct: 17 LNAPSELGKQQKLWAFAAALGQHDRIEEVVVGMNNLTVFT-RFDTDLATLADELQYVWEH 75 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 + G+ VEIPV YGG GPDL VA E++ RH+ Y V+ +GF PGF Sbjct: 76 TAVTDHQGKLVEIPVCYGGEYGPDLAEVAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFP 135 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 Y+GGL +L TPR PR S+PAGSVGIGG QTGVYP ASPGGWQ+IGRT L LF Sbjct: 136 YLGGLPEALHTPRRAVPRTSVPAGSVGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLN 195 Query: 181 PPTLLRPGDRVRFTVERV 198 PPTLL GD+VRF ER+ Sbjct: 196 PPTLLAAGDQVRFVAERI 213 >HI1731 [E] COG2049 Allophanate hydrolase subunit 1 Hin Haemophilus influenzae Length = 213 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 100/198 (50%), Positives = 127/198 (64%), Gaps = 1/198 (0%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 LP PA++ QQ+++WA A +++ EVV GMNNLT+ T VD L R+E W + Sbjct: 15 LPPPASIQQQRQLWAFARQLQSEQDIVEVVLGMNNLTVFTDF-FVDFKPLVQRLEQLWAE 73 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 L GR +EIPV+YGG G DL +VA+ + E +I HS Y VY +GF GF Sbjct: 74 LKVSDFQGRHIEIPVIYGGERGQDLSDVAKFHQTTPERIIQMHSEPIYTVYMIGFQAGFP 133 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 Y+GGL +L TPR TPR +PAGSVGIGG QTG+YP +SPGGWQLIG T LFD +Q Sbjct: 134 YLGGLPENLHTPRRATPRTVVPAGSVGIGGAQTGIYPFSSPGGWQLIGYTKQALFDKNQA 193 Query: 181 PPTLLRPGDRVRFTVERV 198 PTLL+ GD V+F VE + Sbjct: 194 QPTLLQAGDTVKFIVEGI 211 >RSp0939 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstonia solanacearum Length = 222 Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/198 (47%), Positives = 122/198 (61%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 +P L QQR+W+LA A W EV E VPGMNNL L TR L + R+ W Sbjct: 23 VPGEMNLLTQQRLWSLALEAEAWPEVREAVPGMNNLMLTFTRAPSALAQIETRLHEAWRA 82 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 + GR VE+PVVYGG+ GP + +V HTGLS +E++ RHS +Y V+ LG PG+ Sbjct: 83 ATPLSREGRLVELPVVYGGALGPHMADVVNHTGLSVDEIVERHSAPDYHVFALGSHPGYC 142 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 Y+GG+D +ATPR P +SIP G+V IGG QTGV P GW IG + + FDP + Sbjct: 143 YLGGMDPRIATPRRKVPVLSIPGGAVSIGGAQTGVSASDGPSGWNTIGSSEMCFFDPDKN 202 Query: 181 PPTLLRPGDRVRFTVERV 198 PP LL+PGD +RF VE+V Sbjct: 203 PPALLQPGDVLRFRVEKV 220 >PAB1713 [E] COG2049 Allophanate hydrolase subunit 1 Pab Pyrococcus abyssi Length = 225 Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 87/174 (50%), Positives = 116/174 (66%), Gaps = 7/174 (4%) Query: 24 EEVSEVVPGMNNLTLIT---TRPVVDLDILAHRIETTWPKLSGERSVGRTVEIPVVYGGS 80 E + EVVP ++L +I +++ RI T E+ G+TVEIPV YGG Sbjct: 40 EWLVEVVPAYSSLLVIYDPLKASYEEVESYVRRISTQ----EVEKIKGKTVEIPVAYGGE 95 Query: 81 AGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVS 140 GPD++ VA + GLS ++VI HS Y VYFLGFLPGFAY+GG+D +ATPR PRV Sbjct: 96 FGPDIEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVK 155 Query: 141 IPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQEPPTLLRPGDRVRFT 194 +PAGSVGI G+QTG Y + SPGGW++IGRT L+ F+P + PP+++ PGD V+F Sbjct: 156 VPAGSVGIAGKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPPSIVLPGDYVKFV 209