BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0303.p (430 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1185 [E] COG3616 Predicted amino acid aldolase or racemase Rs... 605 e-173 mll6666 [E] COG3616 Predicted amino acid aldolase or racemase Ml... 253 7e-67 AGpA328 [E] COG3616 Predicted amino acid aldolase or racemase At... 160 4e-39 SMb21134 [E] COG3616 Predicted amino acid aldolase or racemase S... 66 2e-10 >RSp1185 [E] COG3616 Predicted amino acid aldolase or racemase Rso Ralstonia solanacearum Length = 425 Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust. Identities = 301/431 (69%), Positives = 342/431 (79%), Gaps = 7/431 (1%) Query: 1 MNDTNYQGAYEAGIIDPLNKGLGPLPQALPPGQAGTVRWNLLNEDISLPAAVLYEEKIAH 60 MNDT YQG A ++DPL+KGLG L A P Q RWNLLNED+SLPAAVL ++ H Sbjct: 1 MNDTKYQGE-AAAVVDPLDKGLGALDAACTPEQVAAQRWNLLNEDLSLPAAVLSHARLEH 59 Query: 61 NLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVI 120 NL WMQ FVG+Y KLAPHGKTTMAP+LF RQL GAWGITLATAHQT Y HGVRRV+ Sbjct: 60 NLAWMQRFVGEYGAKLAPHGKTTMAPRLFQRQLAGGAWGITLATAHQTRIAYVHGVRRVL 119 Query: 121 MANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFAERKQTLNVLLELGPTGG 180 MANQLVGKRNMAI++ELLADPSFEFFCLVD+A VDQL FF + + + VL+ELG GG Sbjct: 120 MANQLVGKRNMAILAELLADPSFEFFCLVDAADQVDQLAAFFGKAGRPIQVLIELGEQGG 179 Query: 181 RTGVRDEAQQQAVLEATSR-WDSIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQG 239 RTGVRD+AQ ++VL A R ++ LAGVEVYEGVLK E +IR FLQRAV DLAA G Sbjct: 180 RTGVRDDAQLRSVLAALDRAGGAVRLAGVEVYEGVLKAEGEIRAFLQRAVRVFHDLAAAG 239 Query: 240 QLVRGLARGPAVLTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQAQ 299 + L R P VLTGAGSAWYDVVAEEF +ADIG D VLRPGCYLTHDVGIY+AAQAQ Sbjct: 240 R----LQRTPPVLTGAGSAWYDVVAEEFSKADIGRPFDPVLRPGCYLTHDVGIYKAAQAQ 295 Query: 300 IQVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPMPVSRFRPGR 359 I VRNPVAH MRS L PALQ+WAYVQS+PE ++AI+ALGKRDAAFDAG P P R+RPG Sbjct: 296 INVRNPVAHRMRSSLLPALQVWAYVQSVPEPERAIVALGKRDAAFDAGFPQPAQRYRPG- 354 Query: 360 DTGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMLAFDISHPCLTFDKWRHLVVVDAR 419 + P PAHWEVTGMMDQHAYL+IAAGDDI+VGDM+AFDISHPCLTFDKWR + V+D Sbjct: 355 EASPTDVPAHWEVTGMMDQHAYLRIAAGDDIKVGDMIAFDISHPCLTFDKWRQIPVIDDA 414 Query: 420 FDVTDIVQTFF 430 ++V D+VQT+F Sbjct: 415 YNVVDVVQTYF 425 >mll6666 [E] COG3616 Predicted amino acid aldolase or racemase Mlo Mesorhizobium loti Length = 420 Score = 253 bits (646), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 21/399 (5%) Query: 39 WNLLNEDISLPAAVLYEEKIAHNLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAW 98 WN+L D+ LPAA++ + +AHN +WMQ FV + +APH KTTM P++ ARQ+ GAW Sbjct: 36 WNVLAGDLPLPAAIIRADALAHNSRWMQRFVSERGALIAPHVKTTMCPQIIARQIADGAW 95 Query: 99 GITLATAHQTLAGYHHGVRRVIMANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQL 158 G+T+AT Q + G R+I+ANQ VG+ + I+ ++ +P +F +VDSA ++ Sbjct: 96 GVTVATVQQMRVCRNFGADRIILANQAVGRSELDAITAMVKEPDLDFMMIVDSAVGIEAA 155 Query: 159 GRFFAERK--QTLNVLLELGPTGGRTGVRDEAQQQAVLEATSRWDSIALAGVEVYEGVLK 216 + + L +LLE G GGRTG R A+ + L G+E +EG+++ Sbjct: 156 AEAVRRNRLDRPLQLLLERGYPGGRTGCRTNDIALALARQIRATPELRLVGIEAFEGLIQ 215 Query: 217 EEVD-----IRRFLQRAVACLQDLAAQGQLVRGLARGPAVLTGAGSAWYDVVAEEFGQAD 271 E + F+ +A L L A L A ++T GS+ YD+V + Sbjct: 216 TENGSPEQAVGLFMDE-IAALFGLCADDGLFESDA---PLVTAGGSSHYDIVIDRLAH-- 269 Query: 272 IGAALDVVLRPGCYLTHDVGIYRAAQAQIQVRNPVAHSMRSQLQPALQLWAYVQSIPEAD 331 VV R GCY+THD G+YR A ++Q + +R AL++W YVQSIPE Sbjct: 270 --CTARVVTRSGCYVTHDSGLYRIAHQRLQAKIGEQDGLRR----ALEIWTYVQSIPEPG 323 Query: 332 KAIIALGKRDAAFDAGLPMPVSRFRPGRDTGPQATPAHWEVTGMMDQHAYLKIAAGDDIE 391 A++ G+RD D+G P+P+ G P+ P EV + DQHAY++ + Sbjct: 324 LALLTAGRRDCGTDSGFPVPLLLSSAG--AYPRDLPPGCEVINLNDQHAYMRFPPDLPLA 381 Query: 392 VGDMLAFDISHPCLTFDKWRHLVVVDARFDVTDIVQTFF 430 VGD + ISHPC TFDKW+ + +VD+ + V + ++TFF Sbjct: 382 VGDRVGLGISHPCTTFDKWQIIYLVDSDYRVIEAMKTFF 420 >AGpA328 [E] COG3616 Predicted amino acid aldolase or racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 423 Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 172/376 (45%), Gaps = 21/376 (5%) Query: 68 FVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVIMANQLVG 127 V + K APH KT M P++ ++ GAWG T+A Q GV +++ANQ +G Sbjct: 55 LVSAHGAKAAPHAKTPMCPEIAIDLIEAGAWGATVADLFQAEVLLKAGVSNILIANQ-IG 113 Query: 128 KRNMAIISELLAD--PSFEFFCLVDSAALVDQLGRFFAERKQT-LNVLLELGPTGGRTGV 184 A +LAD P E C VDS L + F R V +E+G GRTG Sbjct: 114 GLTSARRLRMLADAFPKAEIICCVDSVQASANLVQAFQGRVDAPFKVFIEVGV--GRTGA 171 Query: 185 RDEAQQQAVLEATSRWDSIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQG-QLVR 243 R + +++ S I LAGV YEG + E L +A L DL +R Sbjct: 172 RTLNVAKDIIDTISTSAEIVLAGVSTYEGSVSGETS--EALDANMAALFDLLTDSLASIR 229 Query: 244 GLARG-PAVLTGAGSAWYDVVAEEF---GQADIGAALDVVLRPGCYLTHDVGIYRAAQAQ 299 G P ++ GS +D V +AD A L +LR G D G+Y+ Sbjct: 230 EKDPGRPLTVSAGGSIHFDRVLAALVPVCEADGNATL--LLRSGAIFFSDHGVYQRGFQA 287 Query: 300 IQVRN-----PVAHSMRSQLQPALQLWAYVQSIPEADKAIIALGKRDAAFDAGLPMPVSR 354 + RN V QP++++WA V S+PE AI+ +G RD +FD LP+ + Sbjct: 288 VDARNLLASGKVVFKASEAFQPSMRIWAEVISVPEPGLAIVGMGMRDVSFDQDLPVALRL 347 Query: 355 FRPGRDTGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMLAFDISHPCLTFDKWRHLV 414 R G + + +V + DQHA+L G + +GD++ F ISHPC FD+WR Sbjct: 348 HRDGHLVEADLSSS-AKVGKLNDQHAFLSFGNGSSLAIGDVIEFGISHPCTCFDRWRVFH 406 Query: 415 VVDARFDVTDIVQTFF 430 +D + I TFF Sbjct: 407 GIDGSGRIQRIYTTFF 422 >SMb21134 [E] COG3616 Predicted amino acid aldolase or racemase Sme Sinorhizobium meliloti Length = 352 Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 130/302 (43%), Gaps = 46/302 (15%) Query: 46 ISLPAAVLYEEKIAHNLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATA 105 I PA ++ + N+ Q + ++ +++ PH KT P++ QLD GA GIT Sbjct: 5 IETPAVLVDLDIARRNVLAFQAYADRHGIRVRPHIKTHKLPQMAELQLDAGAIGITCQKV 64 Query: 106 HQTLAGYHHG--VRRVIMANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFA 163 + A G ++ V++ L+G++ +A ++ L + + D+A +VD L FFA Sbjct: 65 TEAEAMVDGGARIKDVLITYNLLGEQKLARLARL--NERVTVSVVADNATVVDGLAAFFA 122 Query: 164 ERKQTLNVLLELGPTGGRTGVRDEAQQQAVLEATSRWDSIALAGVEVY---EGVLKEEVD 220 + + L VL+E R GV ++ + + + G+ Y +G + Sbjct: 123 DAGKPLTVLVECNTGADRCGVGTPSEAARLARRIAEAPGLRFGGLMTYPPADGAAR---- 178 Query: 221 IRRFLQRAVACLQDLAAQGQLVRGLARG--PAVLTGAGSAWYDVVAEEFGQADIGAALDV 278 ++ F+ A ++ A+G V + G P ++ A + +A E Sbjct: 179 VQAFMSDAKRLIE---AEGLEVPCITSGGTPGMMQAAEAP----IASEH----------- 220 Query: 279 VLRPGCYLTHDVGIYRAAQAQIQVRNPVAHSMRSQLQPALQLWAYVQSIPEADKAIIALG 338 RPG Y+ +D R+ VA + S AL + A V S+P ++AII G Sbjct: 221 --RPGTYIYND-------------RSLVARGVASWEDCALTVLATVVSVPSENRAIIDAG 265 Query: 339 KR 340 + Sbjct: 266 SK 267