BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0294.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2073 [I] COG1183 Phosphatidylserine synthase Rso Ralstonia so... 319 6e-87 PA4693 [I] COG1183 Phosphatidylserine synthase Pae Pseudomonas a... 246 6e-65 NMB1318 [I] COG1183 Phosphatidylserine synthase Nme Neisseria me... 238 2e-62 NMA1532 [I] COG1183 Phosphatidylserine synthase NmA Neisseria me... 238 2e-62 XF0442 [I] COG1183 Phosphatidylserine synthase Xfa Xylella fasti... 221 1e-57 Cj1114c [I] COG1183 Phosphatidylserine synthase Cje Campylobacte... 123 6e-28 jhp0354 [I] COG1183 Phosphatidylserine synthase jHp Helicobacter... 120 5e-27 HP1071 [I] COG1183 Phosphatidylserine synthase Hpy Helicobacter ... 120 5e-27 AGc1962 [I] COG1183 Phosphatidylserine synthase Atu Agrobacteriu... 112 7e-25 BMEI1490 [I] COG1183 Phosphatidylserine synthase Bme Brucella me... 112 1e-24 >RSc2073 [I] COG1183 Phosphatidylserine synthase Rso Ralstonia solanacearum Length = 291 Score = 319 bits (817), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 175/278 (62%), Positives = 205/278 (73%), Gaps = 6/278 (2%) Query: 16 MPTLRRRKAKTGIPFPKSLRKPKAAQ--LDESGQVVVRRRSRGIYLLPNAFTTAALFCGF 73 MP RRK + LR + Q D+ VVR R RGIYLLPNAFTTAALF GF Sbjct: 1 MPAFNRRKKRFTASNVMHLRPLRHNQPRSDDDELEVVRPRRRGIYLLPNAFTTAALFAGF 60 Query: 74 YAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPAL 133 +AIV AMNL F+ A+IAIF AMVLD +DGRVAR+TNTQS FG QYDSLSDM SFG APAL Sbjct: 61 FAIVQAMNLNFETAAIAIFAAMVLDGMDGRVARITNTQSAFGEQYDSLSDMCSFGVAPAL 120 Query: 134 VVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAAALVAGFV 193 V+YEW LR +GK GWLAAFVYCAG ALRLARFNTNI VVDKR+FQG+PSPAAAAL+AGFV Sbjct: 121 VMYEWILRDLGKWGWLAAFVYCAGAALRLARFNTNIGVVDKRFFQGMPSPAAAALIAGFV 180 Query: 194 WLMDDLRFAGTDLSWYAWV---ITLYAGITMVTNVPFYSFKDVNFRKPVPFIAALLVVVA 250 WL D + +L W WV +TLYAG++MV+N PFYS K ++ R VPF +LV+V Sbjct: 181 WLAIDNKLPVKEL-WMPWVAFGLTLYAGLSMVSNAPFYSGKALDVRHRVPFGVMVLVLVL 239 Query: 251 LVLISSDPSKVLFGLFVLYGLSGYGVYLWRRLKGKPVS 288 V++SSDP LFGLFV+Y +SGY ++ WR L G+P S Sbjct: 240 FVVVSSDPPVALFGLFVVYAVSGYVLWGWRALHGRPGS 277 >PA4693 [I] COG1183 Phosphatidylserine synthase Pae Pseudomonas aeruginosa Length = 271 Score = 246 bits (627), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 139/252 (55%), Positives = 180/252 (71%), Gaps = 2/252 (0%) Query: 37 PKAAQLDESGQVVVRR-RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAM 95 P ++E R+ R RGIYLLPN FTTAALF GFYAI+ M+ +F A+IAIFVAM Sbjct: 19 PIDEHIEEGHDAEGRKVRHRGIYLLPNLFTTAALFSGFYAIINGMSGQFANAAIAIFVAM 78 Query: 96 VLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYC 155 VLD LDGRVAR+TNTQS FGA+YDSLSDMV+FG APALV +EW+L +GK+GW+ AF+Y Sbjct: 79 VLDGLDGRVARLTNTQSAFGAEYDSLSDMVAFGVAPALVAFEWALGSLGKVGWMVAFIYV 138 Query: 156 AGGALRLARFNTNIAVVDKRYFQGLPSPAAAALVAGFVWLMDDLRFAGTDLSWYAWVITL 215 AG ALRLARFNT + DKRYF GL SPAAAALVAG VW D G +++ ++ Sbjct: 139 AGAALRLARFNTQVGKADKRYFIGLASPAAAALVAGTVWAFSDFEIQGAKVAFLVALLVA 198 Query: 216 YAGITMVTNVPFYSFKDVNFRKPVPFIAALLVVVALVLISSDPSKVLFGLFVLYGLSGYG 275 AG+ MV+N+ ++SFKD++ R VPF+A L+VV+A ++ +DP ++L LF+ Y SG Sbjct: 199 AAGVLMVSNIKYHSFKDLDLRGRVPFVAILIVVLAFAVVFTDPPRILLLLFLAYAASGPV 258 Query: 276 VYLWR-RLKGKP 286 YL + R + +P Sbjct: 259 QYLLQLRRRKQP 270 >NMB1318 [I] COG1183 Phosphatidylserine synthase Nme Neisseria meningitidis MC58 Length = 248 Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/223 (54%), Positives = 166/223 (74%), Gaps = 3/223 (1%) Query: 53 RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQS 112 R IYLLPN+FT AALF FYAI +M+ +++ A+IA+F++M+LD +DGRVAR+TN+QS Sbjct: 13 RQNSIYLLPNSFTIAALFSAFYAITQSMHGRYETAAIAVFISMLLDGMDGRVARLTNSQS 72 Query: 113 EFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVV 172 FG Q DSL+DMVSFG APAL+ Y+W L GK+G+ AF+YCA ALRLA FNT I V Sbjct: 73 AFGEQLDSLADMVSFGVAPALIAYKWQLWQFGKIGYSVAFIYCACAALRLALFNTLIGKV 132 Query: 173 DKRYFQGLPSPAAAALVAGFVWLMDDL-RFAGTDLSWYAWVITLYAGITMVTNVPFYSFK 231 DKR+F G+PSP AAAL+ G +W+ + +F + W+A ITL+AG++M+ +PF+SFK Sbjct: 133 DKRWFIGVPSPTAAALIVGLIWVNHSVEKFPA--VHWWALGITLFAGLSMIVQIPFWSFK 190 Query: 232 DVNFRKPVPFIAALLVVVALVLISSDPSKVLFGLFVLYGLSGY 274 ++N R+ VPF+ LL V+ L+L++ +PS VLF F+ Y LSGY Sbjct: 191 EINIRRQVPFVGMLLAVLLLLLVTWEPSLVLFLFFLGYSLSGY 233 >NMA1532 [I] COG1183 Phosphatidylserine synthase NmA Neisseria meningitidis Z2491 Length = 248 Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/223 (54%), Positives = 166/223 (74%), Gaps = 3/223 (1%) Query: 53 RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQS 112 R IYLLPN+FT AALF FYAI +M+ +++ A+IA+F++M+LD +DGRVAR+TN+QS Sbjct: 13 RQNSIYLLPNSFTIAALFSAFYAITQSMHGRYETAAIAVFISMLLDGMDGRVARLTNSQS 72 Query: 113 EFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVV 172 FG Q DSL+DMVSFG APAL+ Y+W L GK+G+ AF+YCA ALRLA FNT I V Sbjct: 73 AFGEQLDSLADMVSFGVAPALIAYKWQLWQFGKIGYSVAFIYCACAALRLALFNTLIGKV 132 Query: 173 DKRYFQGLPSPAAAALVAGFVWLMDDL-RFAGTDLSWYAWVITLYAGITMVTNVPFYSFK 231 DKR+F G+PSP AAAL+ G +W+ + +F + W+A ITL+AG++M+ +PF+SFK Sbjct: 133 DKRWFIGVPSPTAAALIVGLIWVNHSVEKFPA--VHWWALGITLFAGLSMIVQIPFWSFK 190 Query: 232 DVNFRKPVPFIAALLVVVALVLISSDPSKVLFGLFVLYGLSGY 274 ++N R+ VPF+ LL V+ L+L++ +PS VLF F+ Y LSGY Sbjct: 191 EINIRRQVPFVGMLLAVLLLLLVTWEPSLVLFLFFLGYSLSGY 233 >XF0442 [I] COG1183 Phosphatidylserine synthase Xfa Xylella fastidiosa 9a5c Length = 256 Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/245 (50%), Positives = 164/245 (66%), Gaps = 16/245 (6%) Query: 54 SRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSE 113 SR IYLLPN TT LF GFYAI+ A N +F ASIA+F+A ++D LDGRVAR+T T SE Sbjct: 10 SRTIYLLPNLLTTIGLFSGFYAIIAATNGQFIDASIAVFIAALMDGLDGRVARLTGTSSE 69 Query: 114 FGAQYDSLSDMVSFGAAPALVVYEWSLRG-------MGKLGWLAAFVYCAGGALRLARFN 166 FG QYDSL+D++SFG AP+LV+Y WSL MG++GW AAF+Y A ALRLARFN Sbjct: 70 FGVQYDSLADLISFGMAPSLVMYHWSLSTLKLDSNIMGRVGWAAAFLYTACAALRLARFN 129 Query: 167 TNIAVVDKRYFQGLPSPAAAALVAGFVWLMDD--LRFAGTDLSWYAWVITLYAGITMVTN 224 T + +VDKR+F GL SPAAA L+ FV+ D L ++G DL + +T+ A + MV+ Sbjct: 130 TQVEMVDKRWFVGLASPAAAGLMMSFVFAFSDGKLGWSGEDLRYITLTVTIAAALLMVSR 189 Query: 225 VPFYSFKDVNFRKP----VPFIAALLVVVALVLISSDPSKVLFGLFVLYGLSGYGVYLWR 280 + F+SFK N P + F+A +++AL++I DP +VL + VLY LSG ++LWR Sbjct: 190 ILFWSFKG-NTSHPRSNNIAFLALAPIILALMMI--DPQRVLLTMAVLYTLSGPILWLWR 246 Query: 281 RLKGK 285 K Sbjct: 247 HQHKK 251 >Cj1114c [I] COG1183 Phosphatidylserine synthase Cje Campylobacter jejuni Length = 242 Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 111/193 (57%), Gaps = 11/193 (5%) Query: 50 VRRRSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTN 109 + R + IY+LPN FT A+ F G +I+ +++ + A I I ++++ D LDGRVAR+TN Sbjct: 1 MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIILSLICDGLDGRVARLTN 60 Query: 110 TQSEFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNI 169 + S+FG ++DSL+D+V+FG APA++ Y GKLG L + GA+RLARFN Sbjct: 61 STSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLITAFFVVFGAIRLARFNVTT 120 Query: 170 AVVDKRYFQGLPSPAAAALVAGFVWL-----MDDLRFAGTDLSWYAWVITLYAGITMVTN 224 + F GLP P AA + A +W D L+ G V+ G+ MV+N Sbjct: 121 GTYEPSVFIGLPIPTAAVVSA--IWTYAFISYDFLKPYGVVF----LVLQAILGLLMVSN 174 Query: 225 VPFYSFKDVNFRK 237 + + SFK ++F + Sbjct: 175 IRYPSFKKLDFNR 187 >jhp0354 [I] COG1183 Phosphatidylserine synthase jHp Helicobacter pylori J99 Length = 237 Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 129/217 (59%), Gaps = 5/217 (2%) Query: 57 IYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGA 116 +YL PN FT +++F G +I A + +F A + +++LD LDGRVAR+TNT S+FG Sbjct: 6 LYLFPNLFTASSIFLGMMSIFYASSYQFVMACWLVVASLILDGLDGRVARLTNTTSKFGI 65 Query: 117 QYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRY 176 ++DSL+D+V+FG AP+L+ Y + G++G + ++ GA+RLARFN + D Sbjct: 66 EFDSLADVVAFGVAPSLITYFYVGYNFGRIGMAVSALFVIFGAIRLARFNISTNTSDPYS 125 Query: 177 FQGLPSPAAAALVAGFVWLMDDLRF--AGTDLSWYAWVITLYAGITMVTNVPFYSFKDVN 234 F G+P PAAA LV V L + F T+ + +++ L G+ MV+N+ + +FK V Sbjct: 126 FIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKLFLGFIVLL--GVLMVSNIRYPNFKKVK 183 Query: 235 FRKPVPFIAALLVVVALVLISSDPSKVLFGLFVLYGL 271 + + FI L+ + + + + V GL+++YG+ Sbjct: 184 WNLKL-FILVLIFLSLVFVRPLEALSVFMGLYLIYGI 219 >HP1071 [I] COG1183 Phosphatidylserine synthase Hpy Helicobacter pylori 26695 Length = 237 Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 11/220 (5%) Query: 57 IYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGA 116 +YL PN FT +++F G +I A + +F A + +++LD LDGRVAR+TNT S+FG Sbjct: 6 LYLFPNLFTASSIFLGMMSIFYASSYQFVMACWLVVASLILDGLDGRVARLTNTTSKFGI 65 Query: 117 QYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRY 176 ++DSL+D+++FG AP+L+ Y + G++G + ++ GA+RLARFN + D Sbjct: 66 EFDSLADVIAFGVAPSLIAYFYVGYNFGRIGMAVSALFVIFGAIRLARFNISTNTSDPYS 125 Query: 177 FQGLPSPAAAALVAGFVWLMDDLRF--AGTDLSWYAWVITLYAGITMVTNVPFYSFKDVN 234 F G+P PAAA LV V L + F T+ + ++++ L G+ MV+N+ + +FK V Sbjct: 126 FIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKLFLSFIVLL--GVLMVSNIRYPNFKKVK 183 Query: 235 FRKPVPFIAALLVVVALVLISSDPSK---VLFGLFVLYGL 271 + + +LV++ L L+ P + V GL+++YG+ Sbjct: 184 WNLKL----FILVLIFLSLVFVRPLEALSVFMGLYLIYGI 219 >AGc1962 [I] COG1183 Phosphatidylserine synthase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 290 Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 18/208 (8%) Query: 59 LLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQY 118 L+PN T A+ G + +A+ +F+ A + +A LD +DGRVARM S+FG Q Sbjct: 36 LVPNLITVLAICAGLSGVRLAIEGRFELAVGMVLLAAFLDGVDGRVARMMKATSKFGEQM 95 Query: 119 DSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNI-----AVVD 173 DSL+D+V+FG APALVVY + L +GW+ A +Y LRLARFN I A Sbjct: 96 DSLADIVNFGVAPALVVYIYLLDQARSIGWIGALIYVIAAGLRLARFNVMIERPVKAPWQ 155 Query: 174 KRYFQGLPSPAAAALV-----AGFVWLMDDLRFAGTDLSWYAWVITLYAGITMVTNVPFY 228 +F G+P+P A LV GF+ + D FA + A T+ G +++ +P + Sbjct: 156 SEFFVGVPAPMGAMLVLLPVYLGFLGVEPDKPFA-----YVAAAYTVLIGYLLISRLPVW 210 Query: 229 SFK-DVNFRKP--VPFIAALLVVVALVL 253 S K R+ +P I +++ VA+++ Sbjct: 211 SGKSSTRIRRDLVLPMILVVVLYVAMLM 238 >BMEI1490 [I] COG1183 Phosphatidylserine synthase Bme Brucella melitensis Length = 293 Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 19/209 (9%) Query: 59 LLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQY 118 ++PN T A+ G I +A +F+ A + +A LD +DGR+ARM S+FGAQ Sbjct: 45 VVPNVITVLAICAGLTGIRLAFENRFELAVAMVLLAAFLDGIDGRIARMIKGSSKFGAQM 104 Query: 119 DSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNT-----NIAVVD 173 DSL+D+V+FG APALV+Y + L GW+AA +Y LRLARFN N Sbjct: 105 DSLADIVNFGVAPALVLYAFMLDQARSFGWIAALLYAIACCLRLARFNVMLEDPNRPAWQ 164 Query: 174 KRYFQGLPSPAAAALVA-----GFVWLMDDLRFAGTDLSWYAWVITLYAGITMVTNVPFY 228 YF G+P+PA A LV GF+ LM L++ T+ +V+ +P Y Sbjct: 165 NNYFIGVPAPAGAMLVLLPVYFGFLGLMPT-----RALAFGVAAYTVAIAFLLVSRLPVY 219 Query: 229 SFKDVN--FRKPV--PFIAALLVVVALVL 253 + K R+ + P I +++ VAL++ Sbjct: 220 NGKSAGSLVRRDIVMPLILCVVIYVALLM 248