BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0242.p (237 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3888 [E] COG1174 ABC-type proline/glycine betaine transport sy... 236 4e-62 STM1494 [E] COG1174 ABC-type proline/glycine betaine transport s... 218 1e-56 SMa1465 [E] COG1174 ABC-type proline/glycine betaine transport s... 187 1e-47 SA0678_1 [E] COG1174 ABC-type proline/glycine betaine transport ... 123 4e-28 BS_opuCB [E] COG1174 ABC-type proline/glycine betaine transport ... 115 6e-26 BS_opuBB [E] COG1174 ABC-type proline/glycine betaine transport ... 113 4e-25 lin1461_1 [E] COG1174 ABC-type proline/glycine betaine transport... 112 6e-25 SMa1467 [E] COG1174 ABC-type proline/glycine betaine transport s... 110 2e-24 YPO1199 [E] COG1174 ABC-type proline/glycine betaine transport s... 110 3e-24 CAC2849_1 [E] COG1174 ABC-type proline/glycine betaine transport... 105 8e-23 >PA3888 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Pae Pseudomonas aeruginosa Length = 240 Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 140/182 (76%) Query: 22 VWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQI 81 + WI P I YR DL++Y HL LVF+SM AL G+PAGI LSRPG Q AE+ +Q+ Sbjct: 23 IHWITPATILHYREDLLFYLQAHLVLVFSSMAAALLVGVPAGILLSRPGMQAQAERLMQV 82 Query: 82 FNIGNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARG 141 FN+GNTIP +AVLA A A ILAL+LASLLPIVRNTYEGL+NV A+KEAA G Sbjct: 83 FNVGNTIPPLAVLAIALAIIGIGNGPAILALFLASLLPIVRNTYEGLRNVSPALKEAATG 142 Query: 142 IGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNH 201 IGM P+Q+LLRVELPNA+PIIVGGVR ALA+NVG+APL+ LIG SLG LIFPGIYLNNH Sbjct: 143 IGMTPNQVLLRVELPNAVPIIVGGVRVALALNVGSAPLAFLIGANSLGSLIFPGIYLNNH 202 Query: 202 GQ 203 Q Sbjct: 203 QQ 204 >STM1494 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Sty Salmonella typhimurium LT2 Length = 236 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/215 (56%), Positives = 151/215 (70%), Gaps = 4/215 (1%) Query: 12 LGFALV----LAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALS 67 LGF +V LA +W IG + ++ + DL+Y +HL LVFTSM AL GIP+GI LS Sbjct: 10 LGFTIVILLLLALFIWGIGLETLKARQVDLLYLGQRHLMLVFTSMFFALLVGIPSGILLS 69 Query: 68 RPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEG 127 RP A+ AE +QIFN+GNT+P +AVLA A I+AL+LASLLPIVRNTY G Sbjct: 70 RPAAKGFAEYVMQIFNVGNTLPPLAVLALAMVIIGIGDTPAIVALFLASLLPIVRNTYAG 129 Query: 128 LKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGES 187 L +VPA++ EAA GIGM Q L +VELPNA P+++ G+R A AINVGTAPL+ LIG S Sbjct: 130 LCSVPASLIEAANGIGMTKWQRLRQVELPNAWPVMLSGIRIATAINVGTAPLAFLIGASS 189 Query: 188 LGGLIFPGIYLNNHGQLLLGAAATALLALVLDALV 222 G LIFPGIYLN+ L+LGA ATAL AL+LD L+ Sbjct: 190 YGELIFPGIYLNDFPTLILGATATALFALILDTLL 224 >SMa1465 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Sme Sinorhizobium meliloti Length = 251 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 5/236 (2%) Query: 5 RHVFASALGFALVLAG---LVWWIG-PDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60 R + + L +VLAG L+WW G + I Y D+ Y T +HLELV + LA+ + Sbjct: 14 RRIETAPLIVLIVLAGTVALLWWSGMAEEILAYSDDISYLTVQHLELVAWAGGLAILVAV 73 Query: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLPI 120 P GI LSRP + +E +Q+FNIG+T+P++A+LA + + LW A+LLPI Sbjct: 74 PVGIVLSRPAFRLVSEAVMQVFNIGSTVPTLAILALSMTLLGIGTVPAVFGLWAATLLPI 133 Query: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 VRNTY GL+ VP + EAA G+GM P Q+L RVELPNAL +I GG+RTALAI VG+APL Sbjct: 134 VRNTYAGLRAVPPHLVEAATGMGMTPRQVLWRVELPNALFVIFGGIRTALAICVGSAPLV 193 Query: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLR 236 LIG LG LIF GI L+ ++ GA TA+LA+++D +V + +YL RG+ Sbjct: 194 FLIGAGGLGELIFTGISLDELPMMMAGAIPTAMLAVLVDFIVGQIQ-YYLVPRGIN 248 >SA0678_1 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Sau Staphylococcus aureus N315 Length = 234 Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 2/192 (1%) Query: 28 DVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNT 87 D++ + +G L +H+++ F ++L+A A +P GI L++ + +E + I I T Sbjct: 6 DILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTK--TKTISEIVMNIAAILQT 63 Query: 88 IPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPH 147 IPS+A+L I+AL + +LLPI+RNTY G+K V ++ EAA+GIGMKP Sbjct: 64 IPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPF 123 Query: 148 QILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLG 207 + L +VELP A+P+I+ GVRTA+ + +GTA L+ LIG LG LI GI NN +LLG Sbjct: 124 RRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLG 183 Query: 208 AAATALLALVLD 219 A ALLA++ D Sbjct: 184 AIPAALLAIIFD 195 >BS_opuCB [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Bsu Bacillus subtilis Length = 217 Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 111/190 (58%), Gaps = 2/190 (1%) Query: 30 IQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIP 89 +Q G+L+Y TG+HL + +++L + +P G+AL+R ++ A I NI T+P Sbjct: 8 LQTNGGELLYKTGEHLYISLIAVVLGIIVAVPLGVALTR--MKKGAGAVIGFVNIVQTLP 65 Query: 90 SIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQI 149 S+A+LA I+AL+ S+LPI+RNTY G+K V + E+ +GIGM + Sbjct: 66 SLAILAFFIPLLGVGKVPAIVALFFYSVLPILRNTYTGIKGVNKNLLESGKGIGMTGWEQ 125 Query: 150 LLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAA 209 + VE+P A+PII+ G+RT+ +G A L+ IGG LG IF G+ L ++ GA Sbjct: 126 IRLVEIPLAIPIIMAGIRTSTIYLIGWATLASFIGGGGLGDYIFIGLNLYQPEYIIGGAV 185 Query: 210 ATALLALVLD 219 +LA+++D Sbjct: 186 PVTILAIIID 195 >BS_opuBB [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Bsu Bacillus subtilis Length = 217 Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 110/190 (57%), Gaps = 2/190 (1%) Query: 30 IQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIP 89 +Q G+L+Y T +H+ + +++L + +P G+ L+R ++ A I I NI T+P Sbjct: 8 LQTNGGELLYKTYEHITISLIAVILGVLVAVPLGVVLTR--MKKGAGTIIGIVNIIQTLP 65 Query: 90 SIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQI 149 S+A+LA I+AL+ S+LPI+RNTY G++ V + E+ +GIGM P + Sbjct: 66 SLAILAFFIPLLGVGKVPAIVALFFYSVLPILRNTYTGIRGVNKNLLESGKGIGMTPAEQ 125 Query: 150 LLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAA 209 + VELP A P+I+ G+RT+ +G A L+ IGG LG IF G+ L ++ GA Sbjct: 126 VRLVELPLAAPVIMAGIRTSTIYLIGWATLASFIGGGGLGDYIFIGLNLYQPEYIIGGAV 185 Query: 210 ATALLALVLD 219 +LA+V+D Sbjct: 186 PVTILAIVID 195 >lin1461_1 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Lin Listeria innocua Length = 205 Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 119/199 (59%), Gaps = 2/199 (1%) Query: 28 DVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNT 87 D + +L +H+++ F S+ +A+ +P GI L+R +R AE IQ+ I T Sbjct: 6 DTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTR--HKRLAEPIIQVAAIFQT 63 Query: 88 IPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPH 147 IPS+A+L I+AL + +LLPI+RNTY G+K V A+ EA+R +GM Sbjct: 64 IPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGMNKW 123 Query: 148 QILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLG 207 + L +V+LP A+P+I+ G+RTA+ + +GTA L+ LIG LG LI GI N++ +LLG Sbjct: 124 KRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNDNSLILLG 183 Query: 208 AAATALLALVLDALVTALS 226 A ALLA++ D L+ L Sbjct: 184 AIPAALLAILFDFLLRFLE 202 >SMa1467 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Sme Sinorhizobium meliloti Length = 220 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 120/201 (59%), Gaps = 8/201 (3%) Query: 41 TGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARAR 100 T +H+ +VF ++ +A+AT +P G+A+++ ++ +A+ + + ++ T+PSIA+ Sbjct: 18 TIEHISIVFLAVGIAIATAVPIGVAITQ--SKSTADTVLYLASMMITVPSIALFGLMIPL 75 Query: 101 ARARARA-----TILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVEL 155 ++A+ L S LPI+RNTY + NV A++EAA+G+GM Q L +VE+ Sbjct: 76 LSPIGHGIGYVPAVVAVILYSQLPIIRNTYTAITNVDPALREAAKGMGMSTWQRLRQVEI 135 Query: 156 PNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLA 215 P A+P+I+ GVRTA+ +N+G ++ IG LG I GI ++ QL+ GA A +LLA Sbjct: 136 PLAIPVIMAGVRTAVVMNIGVTAIAAYIGAGGLGTFISRGISQSDPRQLVTGALAVSLLA 195 Query: 216 LVLDALVTALSGFYLARRGLR 236 + D L AL L RG++ Sbjct: 196 IAAD-LFLALVQRLLTSRGIQ 215 >YPO1199 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Ype Yersinia pestis Length = 278 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 102/171 (59%) Query: 51 SMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATIL 110 S +A+ G+ GIA++RP + + +G T P +AVLA A + I+ Sbjct: 85 SSSIAVFIGVTTGIAVTRPAGKEFRSVVETVVAMGQTFPPVAVLAIAVPVMGFSEKPAII 144 Query: 111 ALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTAL 170 AL L LLPI++ T G+++V +++E A G+GM QIL +VELP A P+IV G+RT++ Sbjct: 145 ALVLYGLLPILQGTIAGIESVSTSIREVAAGVGMSARQILWQVELPLAAPVIVAGIRTSV 204 Query: 171 AINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDAL 221 IN+GTA ++ +G ++LG I G+ N ++ GAA ALLA++ D + Sbjct: 205 IINIGTAAIASTVGTKTLGSPIIIGLSGFNTAYVIQGAAVVALLAIITDMI 255 >CAC2849_1 [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component Cac Clostridium acetobutylicum Length = 250 Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 43 KHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARAR 102 +H+EL ++++++ G+P GI ++R ++ + I + N+ +IPS+A+L Sbjct: 21 QHIELTLFAVIVSIIIGVPIGILITR--VRKISSTVIALANVVQSIPSMALLGFLIPVFG 78 Query: 103 ARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPII 162 ++ I+ + L SLLPI++NT+ GLKN+ + EAA GIG+ +QIL+++ LP A+P+I Sbjct: 79 IGSKPAIVMVVLYSLLPIIKNTFTGLKNIQPHIIEAATGIGLTKNQILVKISLPLAMPVI 138 Query: 163 VGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGA 208 + G+R ++ VG ++ IG LG L+F G+ N+ +L GA Sbjct: 139 MSGIRISVVTAVGLMTIAAFIGAGGLGYLVFSGVQTVNNNMILAGA 184