BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0196.p (534 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0771 [E] COG2303 Choline dehydrogenase and related flavoprote... 511 e-144 alr1576 [E] COG2303 Choline dehydrogenase and related flavoprote... 291 4e-78 VNG1035C [E] COG2303 Choline dehydrogenase and related flavoprot... 251 4e-66 CC1634 Non COG 162 3e-39 mlr5266 [E] COG2303 Choline dehydrogenase and related flavoprote... 142 1e-33 AGl980 [E] COG2303 Choline dehydrogenase and related flavoprotei... 127 5e-29 SMc04392 [E] COG2303 Choline dehydrogenase and related flavoprot... 125 2e-28 BMEI0025 [E] COG2303 Choline dehydrogenase and related flavoprot... 123 9e-28 AGl1138 [E] COG2303 Choline dehydrogenase and related flavoprote... 113 1e-24 mlr6655 [E] COG2303 Choline dehydrogenase and related flavoprote... 111 3e-24 >RSc0771 [E] COG2303 Choline dehydrogenase and related flavoproteins Rso Ralstonia solanacearum Length = 539 Score = 511 bits (1316), Expect = e-144, Method: Compositional matrix adjust. Identities = 265/533 (49%), Positives = 338/533 (63%), Gaps = 11/533 (2%) Query: 7 ADVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYPYS 66 AD+VV+G+GV GAL+A LA+ GKSVL+LE+GPR+ R ++VERFR A K DFMAPYP + Sbjct: 10 ADIVVVGSGVAGALVAYELARAGKSVLMLEAGPRLPRWEIVERFRNQADKMDFMAPYPST 69 Query: 67 PLAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQHSLYGVG 126 P APHP Y P+ N YL KG H F++QYIR GGT+WHWAA WR++PNDF+ S+YG+ Sbjct: 70 PWAPHPEYGPD-NNYLILKGEHKFDSQYIRAVGGTTWHWAASTWRFLPNDFKLRSVYGIA 128 Query: 127 KDWPISYDDLEDYYYQAEVIAGVGG--SPESGSPRKHPFPMERVPASWLQQRVTARLA-- 182 +DWPI YDDLE YY +AE GV G E GSPR P+PM +P S+ ++ V L Sbjct: 129 RDWPIQYDDLERYYGRAEAALGVWGPNDEELGSPRSQPYPMAPLPLSFNERTVKDALNAH 188 Query: 183 -PEFTVLDDSTGRNSRNYDGRPACCGNNNCMPLCPIDAQYHGGLAAQQAEDSGVKVITEA 241 P V+ + RNSR YDGRP CCGNNNCMP+CPI A Y+G + ++AE +G ++I A Sbjct: 189 DPALRVVTEPVARNSRPYDGRPTCCGNNNCMPICPIGAMYNGIVHVEKAEQAGARLIENA 248 Query: 242 VVYRLEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMSTSDRFPQGIAN 301 VVY+LE RI AAHY D V HR+ + FVLAAN IETPKL+LMST FP+G+ N Sbjct: 249 VVYKLEVGAGKRIVAAHYKDPKGVDHRVEGKWFVLAANGIETPKLMLMSTGADFPKGVGN 308 Query: 302 ARDNVGRNLCDHPAIGVSFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHAPFRIDISNAS 361 D VGRNL DHP GVSF D ++WPGRGP S+ FRDG FRA A ++ +SN S Sbjct: 309 RSDMVGRNLMDHPGTGVSFYADRKLWPGRGPQEMTSLIGFRDGPFRATQAGKKLHLSNIS 368 Query: 362 QVAAVTKEVVAEGYFGK--RLEEQILFRAARRLSIKNALEQLPDRNNRVT-LGDKKDELG 418 ++ T + G K L+ +I +AAR + + E LP NR+ D LG Sbjct: 369 RIEQETTRIFKAGKLLKPAELDARIRDQAARYVQFDSFHEILPLPENRIVPSATGTDALG 428 Query: 419 LPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHSKSGAFSNRQHITGTLSMGLD 478 +P P + + +DDYV + TR Y A LG T+++ F+ HITG MG D Sbjct: 429 IPRPEITYRIDDYVKRSAVHTREVYATAARVLGGTDVQFHDD--FAPNNHITGATIMGSD 486 Query: 479 PATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTADKIIEES 531 P SV D R DH NLF+ + MPTVGT NVTLT ALALR AD++ +E+ Sbjct: 487 PKDSVVDKDCRTFDHPNLFISSSATMPTVGTVNVTLTIAALALRIADQLKKEA 539 >alr1576 [E] COG2303 Choline dehydrogenase and related flavoproteins Nos Nostoc sp. PCC 7120 Length = 619 Score = 291 bits (744), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 193/592 (32%), Positives = 291/592 (49%), Gaps = 80/592 (13%) Query: 8 DVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYPYSP 67 D V++G GV GA++A L++ GK +L++E+ + +D + F+ ++ F +P Sbjct: 20 DAVIVGTGVAGAIVAKELSQQGKRILIIEA--TVHKDLTLAGFQ--SYVDTFYKAVDKNP 75 Query: 68 LAPHP-----RYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQHSL 122 +P+P + + N Y ++GP Y R+ GGT+ HW A+ R +P DF+ S Sbjct: 76 NSPYPANSNVQSPTDYNDYFIEQGPMPLAGSYTRVLGGTTMHWEAKTPRMLPEDFKLSST 135 Query: 123 YGVGKDWPISYDDLEDYYYQAEVIAGVGGSPESGS------PRKHPFPMERVPASWLQQR 176 YG G DWPI Y DLE YY +AE GV G + P+ + FPME++P S+L Q+ Sbjct: 136 YGQGLDWPIDYHDLEPYYRKAEHEMGVCGDVDEQRALGLEFPQDYVFPMEKLPPSYLDQK 195 Query: 177 VTAR-------LAPEFTVLDDSTGRNSRNYDGRPA-----------------------CC 206 V + L + L ST +RN P C Sbjct: 196 VIEKVNGTNVELYGKTHTLSFSTFPQARNGVPNPKYDQGNLFVPDGVTSVHPVQYGERCQ 255 Query: 207 GNNNCMPLCPIDAQYHGGLAAQQAEDSG-VKVITEAVVYRLEHD-EKGRIAAAHYYDWNK 264 GN NC+P+CP+ A+Y +A ++G V V+ +AV Y++E+D + GRI A HY + K Sbjct: 256 GNANCVPICPVQAKYDARRTLSKAFETGKVHVLYQAVAYKVEYDRQTGRITAIHYKHYKK 315 Query: 265 ------VSHRITAQTFVLAANAIETPKLLLMSTSDRFPQGIANARDNVGRNLCDHPAIGV 318 + FVLA NA+E +LLL S + N +GR L DHP Sbjct: 316 PNSSEYTTGIAKGTLFVLATNAVENARLLLGS-------DLPNTSRLIGRYLMDHPFTLA 368 Query: 319 SFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHAPFRIDISN-------ASQVAAVTKEVV 371 + E RGP+ IG FR GDFR + + F +DI N S + V V Sbjct: 369 WALMPEVTGTMRGPLVTSGIGTFRKGDFRKKQSAFAVDIHNDGWGWATGSPKSEVEDAVD 428 Query: 372 AEGYFGKRLEEQILFRAARRLSIKNALEQLPDRNNRVTLGDK-KDELGLPVPALYWNVDD 430 + +G+ L + ++ R +R+L + E LP+ NRVT+ + KD+LG P + +N+ D Sbjct: 429 NKNKYGQELRQTLISRISRQLLLAFMCELLPEYGNRVTIDPRHKDKLGNYRPVINFNLPD 488 Query: 431 YVIKGTEQTRACYDAIAAKLGATNIKH------------SKSGAFSNRQHITGTLSMGLD 478 Y + TR I +LGA + H + + H +GT MG Sbjct: 489 YSRRTLAYTRKVSRVIFERLGAEDYTHYDPQDPAYFEFEGEGYVYKGGNHFSGTHIMGTT 548 Query: 479 PATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTADKIIEE 530 P SV D++ R+ DH+NLF+VG G MPT+G+ N TLT AL+ RTA+ +++E Sbjct: 549 PLNSVVDSYLRSWDHKNLFLVGAGSMPTIGSSNTTLTIAALSFRTAEHMLQE 600 >VNG1035C [E] COG2303 Choline dehydrogenase and related flavoproteins Hbs Halobacterium sp. NRC-1 Length = 529 Score = 251 bits (640), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 184/536 (34%), Positives = 254/536 (47%), Gaps = 32/536 (5%) Query: 6 SADVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMG---RDQLVERFRGSAFKSDFMAP 62 +ADV VIGAG G L+A RLA G SV++LE+GPR R++ +ER + + Sbjct: 8 NADVCVIGAGPAGGLIADRLASDGHSVVVLEAGPRFDAADRERRMER----SIRPAHGPA 63 Query: 63 YPYSPLAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQHSL 122 + P Y + Y + NA ++ GG++ HW + R DFR S Sbjct: 64 SVWEMGGPRDAYASTGDRY------YPLNAARVKGVGGSTLHWQGMVMRLHEQDFRLASA 117 Query: 123 YGVGKDWPISYDDLEDYYYQAEVIAGVGGSPES--GSPRKHPFPMERVPASWLQQRVTAR 180 GVG DWP YD L+ YY AE GV G+ ++ PR+ P P P S+ + A Sbjct: 118 TGVGADWPFDYDTLKPYYAAAESALGVSGASDNPFAPPREQPHPQPAFPPSY-SDSLFAD 176 Query: 181 LAPEFTVLDDST--GRNSRNYDGRPACCGNNNCMPLCPIDAQYHGGLAAQQAEDSGVKVI 238 + S R S + R AC G C P+CP A+Y + +A D+G +VI Sbjct: 177 ACESLGIATHSVPNARLSAGRETRRACVGYGTCQPVCPSGAKYDATVHVDRATDAGARVI 236 Query: 239 TEAVVYRLEHDEKG-RIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMSTSDRFPQ 297 EA V RLEHD G R+ A Y + +HR +A FVLAA IETP+LLL+S SDR+P Sbjct: 237 DEAPVQRLEHDAAGDRVTGAVYATPDGTTHRQSATEFVLAAGGIETPRLLLLSDSDRYPD 296 Query: 298 GIANARDNVGRNLCDHPAIGVSFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHAPFRIDI 357 G+AN+ VGR DH G +DE + Q+ D R + + I + Sbjct: 297 GLANSSGLVGRYFMDHLFAGAGGTLDEPTRQNHVGFNTTESHQYYD---RPDGSRGAIKL 353 Query: 358 SNASQVAAVTKEVVAEG-YFGKRLEEQILFRAARRLSIKNALEQLPDRNNRVTLG-DKKD 415 + E+ G +G + ++I + +++ +EQ P NRV L ++ D Sbjct: 354 EFLNYAGPSPAEMALSGDDWGDAMCDRIRDASGTHIAVGGLVEQQPRPENRVRLHPERTD 413 Query: 416 ELGLPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGA----TNIKHSKSGAFSNRQHITG 471 G PVP + W++ Y + E+ I +LGA T AF H G Sbjct: 414 VHGNPVPDVVWSLSAYERRTIERANEIQREILTELGADIEWTVGPEDTGPAF----HHMG 469 Query: 472 TLSMGLDPATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTADKI 527 T MG DPA SV D R HD NL + + V PT G N TLT ALAL+ AD I Sbjct: 470 TTRMGTDPAESVVDPRLRTHDLSNLSVASSSVFPTAGAMNPTLTIAALALKAADHI 525 >CC1634 Non COG Length = 579 Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 160/574 (27%), Positives = 246/574 (42%), Gaps = 64/574 (11%) Query: 5 NSADVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDF-MAPY 63 N+ D +V+G+G+TG + A L + G VL+LE GP + + ++S + Sbjct: 12 NTYDAIVVGSGITGGIAAKELTEKGLKVLVLERGPMVRHLEDYPTAMLDPWQSKYPQGKL 71 Query: 64 PYSPLAPHPRYTPEPNGYLQQKGPHAF------------NAQYIRMF--GGTSWHWAAQL 109 P + L H + + ++ H F +IR + GG S W Q Sbjct: 72 PEAELNAHYKVQRRTGYTMTEQTQHFFVRDDEHPYTEENRFDWIRGYHVGGRSLTWGRQS 131 Query: 110 WRYVPNDFRQHSLYGVGKDWPISYDDLEDYYYQAEVIAGVGGSPESGSPR----KHPFPM 165 +R+ P DF ++ G+ DWPI Y+DL +Y E GV G E G P + PM Sbjct: 132 YRHSPIDFEANAREGIAVDWPIRYEDLAPWYEHVERFIGVSGQAE-GLPHFPDGHYQPPM 190 Query: 166 ERVPASWLQQRVTARLAPEFTVLDDSTGRNSRNYD--------GRPACCGNNNCMPLCPI 217 E + +++ AR F + GR + D GR C N C+ CP Sbjct: 191 E---LNCVEKAFKARSEARFPERRVTIGRTAHLTDPTEEQLALGRTKCQYRNLCIRGCPF 247 Query: 218 DAQY---HGGLAAQQAEDSGVKVIT-EAVVYRLEHDEK-GRIAAAHYYD-WNKVSHRITA 271 A Y GGL A AE +G VI ++V L +DE+ GR + D + A Sbjct: 248 GAYYSSNSGGLIA--AERTGNLVIRPNSIVTELIYDERAGRASGVRILDAETRKDEEFHA 305 Query: 272 QTFVLAANAIETPKLLLMSTSDRFPQGIANARDNVGRNLCDH----PAIGVSFDVDEEIW 327 L A+A+ + +++ STS RFP G NA D +GRN+ DH A G + + + + Sbjct: 306 DVIFLCASALNSAWIMMNSTSSRFPNGFGNASDQLGRNVMDHHLGAGATGQAPEFADMYF 365 Query: 328 PGRGPVSPCSIGQFRD-GDFRAEHAPFRIDISNASQVAAVTKEVVAEGYFGKRLEEQILF 386 GR P + + +FR+ GD ++ + + T E R + F Sbjct: 366 SGRRP-NGIYVPRFRNLGDAASKRSDYLRGFGYQGGAGRATWER-------DRGQGGRGF 417 Query: 387 RAARR----------LSIKNALEQLPDRNNRVTLG-DKKDELGLPVPALYWNVDDYVIKG 435 AAR+ + + E LP +NRVTL D +D+ GLP + + D + Sbjct: 418 GAARKAALSQPGPWTMGLSGFGEMLPYADNRVTLNRDVEDKFGLPTLTMNVTMRDNEMAM 477 Query: 436 TEQTRACYDAIAAKLGATNIK-HSKSGAFSNRQHITGTLSMGLDPATSVTDAWGRAHDHE 494 +A + G N++ H A H GT MG DP TSV +A + H+ + Sbjct: 478 RRDMQAAAAEMLEAAGFQNVRAHDNGFAPGLGIHEMGTARMGRDPKTSVLNAHNQVHECK 537 Query: 495 NLFMVGTGVMPTVGTCNVTLTAMALALRTADKII 528 N+++ M + N +LT MAL R AD + Sbjct: 538 NVYVTDGAAMASASCVNPSLTYMALTARAADHAV 571 >mlr5266 [E] COG2303 Choline dehydrogenase and related flavoproteins Mlo Mesorhizobium loti Length = 523 Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 149/522 (28%), Positives = 219/522 (41%), Gaps = 84/522 (16%) Query: 8 DVVVIGAGVTGALLATRLAKTGKS-VLLLESGP------RMGRDQLVERFRGSAFKSDFM 60 D++ IG+G A AK K+ +L+LE G ++G++ + S +K++ Sbjct: 59 DLIAIGSGFGSAFFLHEFAKRRKARILILEWGRHNTHEWQLGQNANTDIDDESTYKTNSD 118 Query: 61 APYPYSPLAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQH 120 P+ Y+ I + GGT+ W AQ R+ PNDFR Sbjct: 119 KPWNYT----------------------------IGLGGGTNC-WFAQTPRFHPNDFRLK 149 Query: 121 SLYGVGKDWPISYDDLEDYYYQAEVIAGVGGSPESGS--PRKHPFPMERVPASWLQQRVT 178 S YG+G DWPISYDD+E +Y AE I + G P+ + PR PFP S + + Sbjct: 150 STYGIGNDWPISYDDVEPFYCDAEEIMSISGDPDMAAMLPRSKPFPQPPHRMSTPDKMMK 209 Query: 179 ARLAPEFTVLDDSTGRNSRNYDGRPACCGNNNCMPLCPIDAQYHGGLAAQQA-EDSGVKV 237 A + V+ T R R +CC N C LCP+DA++ E V V Sbjct: 210 AAQPDQHFVM--PTARARVPTAQRTSCCANLRCW-LCPVDAKFTANNGLMHVFEHPDVSV 266 Query: 238 ITEAVVYRLEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMS-TSDRFP 296 A V RL D+ G + + + ++++ F+L ANAI++ ++L S D F Sbjct: 267 CLGAEVRRL--DQVGGTVRSVTFVHDGKEYQVSGDLFILGANAIQSAAIMLRSGLRDEF- 323 Query: 297 QGIANARDNVGRNLCDHPAIGVSFDV---DEEIWPGRGPVSPCSIGQFRDGDFRAEHAPF 353 VGR L H + G +F+V + + G + + G + DG R+EHA Sbjct: 324 ---------VGRGL--HESYGWNFEVYLDGVDNFDGSTITTGLNFGLY-DGPHRSEHAAA 371 Query: 354 RIDISNASQVAAVTKEVVAEGYFGKRLEEQILFRAARRLSIKNALEQLPDRNNRVTLGDK 413 + N Q G R E+ R + L + E L D N VTL D+ Sbjct: 372 LVYFENRWQ-------------HGMRAEKG---RLRQTLPLVVVTENLLDDENFVTL-DE 414 Query: 414 KDELGLPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHSKSGAFSNRQHITGTL 473 D + A DY +KG + + A L + G H+ GTL Sbjct: 415 DDNAFVSFKA----PSDYAVKGMARALDKLPELLAPLPVERL--FDRGIRPTESHVQGTL 468 Query: 474 SMGLDPATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLT 515 MG PA SV D+ H NL +VGT P+ N +LT Sbjct: 469 RMGTGPADSVIDSNMIHHRLRNLVVVGTSTYPSCSCANPSLT 510 >AGl980 [E] COG2303 Choline dehydrogenase and related flavoproteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 561 Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 139/570 (24%), Positives = 230/570 (40%), Gaps = 58/570 (10%) Query: 5 NSADVVVIGAGVTGALLATRLAKTGKSVLLLESG-------------------PRMGRDQ 45 N D +V+G+G++G A L + G VL+LE G P R Sbjct: 4 NHYDAIVVGSGISGGWAAKELTQKGLKVLMLERGRNIEHVTDYQNADKEAWDYPHRNRAT 63 Query: 46 LVERFRGSAFKSDFMAPYPYSPLAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHW 105 + + D++ + + TP Y+++K F ++ GG S W Sbjct: 64 QEMKAKYPVLSRDYLLEEATLGMWADEQETP----YVEEKRFDWFRGYHV---GGRSLLW 116 Query: 106 AAQLWRYVPNDFRQHSLYGVGKDWPISYDDLEDYYYQAEVIAGVGGSPESGSPRKHPFPM 165 Q +R+ DF ++ G+ DWPI Y+D+ +Y E AG+ GS E + Sbjct: 117 GRQTYRWSQTDFEANAKDGIAVDWPIRYEDVSPWYDYVERFAGISGSREGLDILPDGEFL 176 Query: 166 ERVPASWLQQRVTARLAPEFTVLDDSTGRNSRNY------DGRPACCGNNNCMPLCPIDA 219 +P ++++Q V +RL F N R C N C CP Sbjct: 177 PPIPLNFVEQDVASRLKKAFKGTRHLINSRCANITQELPDQERTPCQFRNKCRLGCPF-- 234 Query: 220 QYHGGLAAQQAEDSGVKVITEAVVYR--------LEHDEKGRIAAAHYYD-WNKVSHRIT 270 GG + QA V T + R L +K + D +++ T Sbjct: 235 ---GGYFSTQASTLPAAVATGNLTLRPFSIVKEILYDKDKKKARGVEIIDAETNLTYEYT 291 Query: 271 AQTFVLAANAIETPKLLLMSTSDRFPQGIANARDNVGRNLCDHP-AIGVSFDVD---EEI 326 A L A+ + + +L+ S +D + G+ ++ +G N+ DH +G + VD + Sbjct: 292 ADIIFLNASTLNSTWVLMNSATDVWEGGLGSSSGELGHNVMDHHFRMGATGQVDGFEDFY 351 Query: 327 WPGRGPVSPCSIGQFRD-GDFRAEHAPFRIDISNASQVAAVTKEVVAEGYFGKRLEEQIL 385 + GR P I +FR+ GD + ++ R S + + +AE G ++ + Sbjct: 352 FKGRRPAG-FYIPRFRNTGDDKRKY--LRGFGYQGSASRSRWEREIAELNIGADYKDTLT 408 Query: 386 FRAARRLSIKNALEQLPDRNNRVTLG-DKKDELGLPVPALYWNVDDYVIKGTEQTRACYD 444 + + E LP +NRV L DKKD+ GLPV ++ + + E Sbjct: 409 EPGGWTIGMTAFGEMLPYHDNRVKLDHDKKDKWGLPVLSMNVEMKQNELDMREDMVNDAV 468 Query: 445 AIAAKLGATNIKHSKSGAFSNRQ--HITGTLSMGLDPATSVTDAWGRAHDHENLFMVGTG 502 + +G N+K S+ G ++ H GT MG DP TSV + + D N+F+ Sbjct: 469 EMFEAVGIKNVKPSR-GTYAPGMGIHEMGTARMGRDPKTSVLNGNNQVWDAPNVFVTDGA 527 Query: 503 VMPTVGTCNVTLTAMALALRTADKIIEESR 532 M + N +LT MAL R A+ + E + Sbjct: 528 CMTSASCVNPSLTYMALTARAAEFAVSERK 557 >SMc04392 [E] COG2303 Choline dehydrogenase and related flavoproteins Sme Sinorhizobium meliloti Length = 502 Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 145/546 (26%), Positives = 220/546 (40%), Gaps = 76/546 (13%) Query: 8 DVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYPYSP 67 D+V+IG+GV GA +A LA +G +L+LE+G + D V R + + F+ P Sbjct: 6 DIVIIGSGVGGATVAAGLAASGAEILILEAGSHI-EDLPVNRDQRAIFQRGHFRPK---- 60 Query: 68 LAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFR--QHSLYGV 125 + + GP FN GG S + A L RY DF QH GV Sbjct: 61 -----------ETWYEAGGP-GFNPGNYYNVGGNSKFYGAVLTRYRREDFEEMQHR-DGV 107 Query: 126 GKDWPISYDDLEDYYYQAEVIAGVGGSPESGSPRKHP-----FPMERVPASWLQQRVTAR 180 WP SY++LE +Y +AE + V G + G P +P VP V R Sbjct: 108 SPAWPFSYEELEPWYSRAEQLYQVRG--KLGEDPTEPAHSSGYPHGPVPDEPAIAMVRER 165 Query: 181 LA---------PEFTVLDDSTGRNSRNYDGRPACCGNNNCMPLCPIDAQYHGGLAAQQAE 231 LA P ++ + +D P +DA+ AA + Sbjct: 166 LAEIGLHPYSLPLGVDIERWLAKGKTPWDAHPNSSDGK-------MDAETAALAAALKFP 218 Query: 232 DSGVKVITEAVVYRLEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMST 291 + V++ T + V RL G+ Y + H ++ + +L A A+++ LLL S Sbjct: 219 N--VRLQTGSRVTRLVTGPDGKAIETVLYARDGAEHSLSPKLVILCAGAVQSAVLLLRSA 276 Query: 292 SDRFPQGIANARDNVGRNLCDHPAIGVSFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHA 351 D P G+AN D VGRN +H + V + W V + G DF Sbjct: 277 DDSNPTGLANRSDQVGRNFMNHNSSAV---IALSPWYRNDSVYQKTFGL---NDFYLSDG 330 Query: 352 PFRIDISNASQVAAVTKEVVAEGYFGKRLEEQILFR-AARRLSIKNALEQLPDRNNRVTL 410 + N + ++ ++ + E +L R +AR + E LP +RV + Sbjct: 331 AGGPPLGNVQLLGRISGAILKANM--PAMPEWLLNRVSARGIDFYAMSEDLPSPESRVMV 388 Query: 411 GDKKDELGLPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHS----KSGAFSNR 466 ++ V+K + + A+L A K + AF R Sbjct: 389 DGER----------------VVLKWVRTNWQAHLDLVARLKAVLKKAGFPIVLARAFDKR 432 Query: 467 --QHITGTLSMGLDPATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTA 524 H GT+ +G DP + D + RA DH NLF+V G +PT N LT A ALR A Sbjct: 433 TPSHQCGTVRIGNDPGQAPLDVYCRAFDHPNLFVVDAGFLPTSAAVNPALTVAAQALRVA 492 Query: 525 DKIIEE 530 D I+++ Sbjct: 493 DHIVKQ 498 >BMEI0025 [E] COG2303 Choline dehydrogenase and related flavoproteins Bme Brucella melitensis Length = 494 Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 147/530 (27%), Positives = 215/530 (40%), Gaps = 73/530 (13%) Query: 19 ALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYPYSPLAPHPRYTPEP 78 A +A LA +G +L+LE+G R+ D+ R + F+ F + P+ Sbjct: 17 ATMAAGLAASGADILILEAGARLA-DRPENRDPRAIFQRGF--------------FRPKE 61 Query: 79 NGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQHS-LYGVGKDWPISYDDLE 137 Y P FN GG S + A L RY DF + + L GV WP SYD+LE Sbjct: 62 LWYETSGAP--FNPGNYYNVGGNSKFYGAVLIRYRREDFEELAHLEGVSPAWPFSYDELE 119 Query: 138 DYYYQAEVIAGVGGSPESGSPRKH---PFPM-----ERVPASWLQQRVTARLAPEFTVLD 189 +Y +AE + V G H P+P ER A + A L P L Sbjct: 120 PWYCKAEELFQVRGELGDDPTEPHHSKPYPYAAIRDERPIADMRARLKKAGLHPASLPLG 179 Query: 190 DSTGR---NSRN-YDGRPACCGNNNCMPLCPIDAQYHGGLAAQQAEDSGVKVITEAVVYR 245 R +R +D P C CP+ AQ + + V++ T A V R Sbjct: 180 VDIERWLAKARTPWDAHPNCDDGKMDAETCPL---------AQALQYANVRLETSAQVRR 230 Query: 246 LEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMSTSDRFPQGIANARDN 305 LE G+ A +Y N + + + +L+A A+++ LLL S G+AN D Sbjct: 231 LEAGPDGKAITAVHYVKNGEALVLRPKLVILSAGAVQSAALLLRS-------GLANRSDQ 283 Query: 306 VGRNLCDHPAIGV-SFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHAPFRIDISNASQVA 364 VGRN +H A V +FD R F D+ + N + Sbjct: 284 VGRNFMNHNASAVIAFD-------PRYRNDSVYQKTFGFNDYYLSDGAGGPPLGNVQLLG 336 Query: 365 AVTKEVVAEGYFGKRLEEQILFR-AARRLSIKNALEQLPDRNNRVTL-GDKKDELGLPVP 422 V+ ++ + + E +L R A + E LP +RV++ GD+ Sbjct: 337 RVSGAILKSNM--RHVPEWLLNRIAGHTIDFYAMSEDLPSPESRVSVDGDRI-------- 386 Query: 423 ALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHSKSGAFSNR--QHITGTLSMGLDPA 480 L+W V ++ + + + L A S AF R H GT +G DPA Sbjct: 387 ILHW-----VRSNWKEHLMLVEKLKSALRAVGFPVVLSRAFDRRTPSHQCGTARIGNDPA 441 Query: 481 TSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTADKIIEE 530 T+ D + RA+DH NL++V +PT N LT A ALR AD+I E Sbjct: 442 TAPLDPYCRAYDHPNLYVVDASFLPTSAAVNPALTIAAQALRVADRIKRE 491 >AGl1138 [E] COG2303 Choline dehydrogenase and related flavoproteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 527 Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 141/536 (26%), Positives = 218/536 (40%), Gaps = 60/536 (11%) Query: 8 DVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYPYSP 67 D+V+IG+GV G+ +A +LA TG +L++E G E+ +D A + + Sbjct: 14 DIVIIGSGVGGSAVALKLAATGAKILIIERG---------EKLPNEPENADAEAVFVQN- 63 Query: 68 LAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDFRQ-HSLYGVG 126 RY + Y + G QY + G T ++ A ++R+ DFR+ GV Sbjct: 64 -----RYRTT-DLYRDETGRTYRPGQYYYVGGHTKFYGTA-MFRFRDRDFREVEHEDGVS 116 Query: 127 KDWPISYDDLEDYYYQAEVIAGV---GGSPESGSPRKHPFPMERVPASWLQQRVTARLAP 183 WP+SY +LE +Y +AE + GV G + PR P+ +P + V R+A Sbjct: 117 PAWPVSYAELEPFYAEAERLFGVRGRAGDDPTEPPRSAPYMHAPIP----HEPVIGRVAK 172 Query: 184 EFTVLDDSTGRNSRNYDGRPA--C--CGNNNCMPLCPIDAQ--YHGGLAAQQAEDSGVKV 237 F L D P C CG + +C DA+ L V + Sbjct: 173 GFERLGLRPFHMPSAIDYGPGGLCRRCGTCDAF-VCRFDAKGDAETRLLRPALRHPNVSL 231 Query: 238 ITEAVVYRLEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMSTSDRFPQ 297 +T A V RL D G+ A + I A FVL+A AI + +LL S ++ P Sbjct: 232 LTGARVRRLIADGDGKHIVAVEIERAGEITTIEAPLFVLSAGAINSALILLRSADEKKPN 291 Query: 298 GIANARDNVGRNLCDHPAIG----VSFDVDEEIWPGRGPVSPCSIGQFRDGDFRAEHAPF 353 G+AN+ VGR L +H G + F +++ +P S+ F DG E A Sbjct: 292 GLANSSGVVGRYLMNHHLSGLMGLLPFTINDTRFP-----KTMSLNDFFDGTPGDEAA-- 344 Query: 354 RIDISNASQVAAVTKEVVAEGY-FGKRLEEQILFRAARRLSIKNALEQLPDRNNRVT-LG 411 N + + ++ Y + R +L R + + + E P ++RV G Sbjct: 345 ---RGNVQMLGNIQGPMIRAAYPWMPRPLANLLARHSVDFLVMS--EDTPKYDSRVKPWG 399 Query: 412 DKKDELGLPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHSKSGAFSNRQHITG 471 EL +Y D + Q + + + S H G Sbjct: 400 KNGAEL------IYRPGD----REAHQRFVRHMRSLLRKNGFPVVLGHSFGIEAPSHQCG 449 Query: 472 TLSMGLDPATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLTAMALALRTADKI 527 T+ MG DP + +A + +DH NL++V G P+ N LT A ALR D I Sbjct: 450 TVRMGDDPKEAALNALCQTYDHPNLYVVDAGFFPSSAALNPALTVAAQALRVGDHI 505 >mlr6655 [E] COG2303 Choline dehydrogenase and related flavoproteins Mlo Mesorhizobium loti Length = 499 Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 143/534 (26%), Positives = 225/534 (42%), Gaps = 76/534 (14%) Query: 5 NSADVVVIGAGVTGALLATRLAKTGKSVLLLESGPRMGRDQLVERFRGSAFKSDFMAPYP 64 ++AD+V+IG+G+ G+ LA LA TG+ +++LE G + RD R + F++ F Sbjct: 4 HTADIVIIGSGIGGSSLAYSLADTGRRIVILERGEHL-RDTPEARDDIAIFQNGFY---- 58 Query: 65 YSPLAPHPRYTPEPNGYLQQKGPHAFNAQYIRMFGGTSWHWAAQLWRYVPNDF--RQHSL 122 R + E +L G Y + GG S + A ++RY DF R H + Sbjct: 59 --------RSSEE---WLATDGESFLPGNYYYV-GGNSKFFGAVMYRYRQEDFNPRDH-M 105 Query: 123 YGVGKDWPISYDDLEDYYYQAEVIAGVGG-------SPESGSPRKH-PFPMERVPASWLQ 174 G WPISY +LE +Y +AE++ GV G P P ++ P P E A+ Q Sbjct: 106 GGRSPGWPISYAELEPWYERAEILFGVRGDARQDPTEPPRNRPYRYLPVPDEPAIATVRQ 165 Query: 175 QRVTARLAPEFTVL----DDSTGRNSRNYDGRPACCGNNNCMPLCPIDAQYHGGLAAQQA 230 + + A + P L D R +D P IDA+ G + Sbjct: 166 RLLQAGIHPASLPLAIDIDAWLRRAKTGWDAFPNTGAGK-------IDAEV--GPLTKAL 216 Query: 231 EDSGVKVITEAVVYRLEHDEKGRIAAAHYYDWNKVSHRITAQTFVLAANAIETPKLLLMS 290 E +IT A V RL D GR A + + V I A F +AA A+++ LLL S Sbjct: 217 EHPNATLITGANVQRLVTDASGRRVMAAVFIKDGVELSIGADVFAVAAGAVQSAALLLRS 276 Query: 291 TSDRFPQGIANARDNVGRNLCDHPAIGV--------SFDVDEEIWPGRGPVSPCSIGQFR 342 ++ +P G+ N+ D +GRN +H + + V ++ + +G F Sbjct: 277 STSVYPNGLGNSSDQLGRNFMNHNTTAMLAIDPFRRNTAVYQKTLGFNDFYNKDPLGSFP 336 Query: 343 DGDFR-AEHAPFRIDISNASQVAAVTKEVVAEGYFGKRLEEQILFRAARRLSIKNALEQL 401 G+ + H I +NA + +VA +G L + L R++I Sbjct: 337 LGNVQLLGHITGNILKANAPLLPRWLAGLVARNCYGWFLTSEDLPNPESRVTI------- 389 Query: 402 PDRNNRVTLGDKKDELGLPVPALYWNVDDYVIKGTEQTRACYDAIAAKLGATNIKHSKSG 461 RN R+ + ++ +G + +I+ +TRA + T K+ Sbjct: 390 --RNGRIVMNWVRNNMG---------AHETLIR---RTRAVMREAGFPVVLTRTFGRKTT 435 Query: 462 AFSNRQHITGTLSMGLDPATSVTDAWGRAHDHENLFMVGTGVMPTVGTCNVTLT 515 + H GT +G DP TSV R+HD NL++ V+PT N LT Sbjct: 436 S-----HQCGTARLGSDPNTSVVSPDCRSHDIANLYVTDASVLPTSAAVNPALT 484