BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0193.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 343 3e-94 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 341 1e-93 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 341 1e-93 livF [E] COG0410 ABC-type branched-chain amino acid transport sy... 340 1e-93 YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport... 328 5e-90 PA1070 [E] COG0410 ABC-type branched-chain amino acid transport ... 304 9e-83 mll3974 Non COG 290 1e-78 SMc01948 [E] COG0410 ABC-type branched-chain amino acid transpor... 290 2e-78 AGc4396 [E] COG0410 ABC-type branched-chain amino acid transport... 289 4e-78 BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transpor... 283 3e-76 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 343 bits (879), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 166/232 (71%), Positives = 193/232 (83%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML F+KV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRASSGRV+F Sbjct: 5 MLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRVVF 64 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 +G+DIT QT +IMR +AI PEGRRVF +TV ENL MG FFA + ++ I++V+ LF Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDRFQERIKWVYELF 124 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS+PRLLLLDEP+LGLAP++I QIFD I +R Sbjct: 125 PRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 184 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 E G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SDTG LLAN VR AYLG Sbjct: 185 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 236 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/232 (70%), Positives = 191/232 (82%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 + +DIT QT +IMR +AI PEGRRVF +TV ENL MG FFA + ++ I++V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I +R Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 E G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SDTG LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/232 (70%), Positives = 191/232 (82%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 + +DIT QT +IMR +AI PEGRRVF +TV ENL MG FFA + ++ I++V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I +R Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 E G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SDTG LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >livF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 241 Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/232 (70%), Positives = 191/232 (82%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 + +DIT QT +IMR +AI PEGRRVF +TV ENL MG FFA + ++ I++V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I +R Sbjct: 129 PRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 E G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SDTG LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 233 Score = 328 bits (842), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 188/232 (81%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML F++V HYG I+ALH VSL++++GEIVTLIGANGAGKTTLL TLCG PRA+ G ++F Sbjct: 1 MLSFNQVSAHYGKIQALHQVSLHIQQGEIVTLIGANGAGKTTLLGTLCGEPRATEGNIVF 60 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 QDIT QT IMR +AI PEGRRVF +TV ENL MG FFA + +Q IE V+ LF Sbjct: 61 GEQDITHWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGFFADRQQYQQRIERVYDLF 120 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS+P+LLLLDEP+LGLAP++I QIFD I+ +R Sbjct: 121 PRLFERRIQRAGTMSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAPIIILQIFDTIQQLR 180 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 E G+T+FLVEQNAN+AL +ADRGYVLENG +V+ DTGA LLAN VR AYLG Sbjct: 181 EEGMTIFLVEQNANQALKLADRGYVLENGRIVLEDTGAALLANEAVRSAYLG 232 >PA1070 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pae Pseudomonas aeruginosa Length = 233 Score = 304 bits (779), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 186/232 (80%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV T+YG I+ALH VS+ V+KGEIVTLIGANGAGK+TLLMTLCG P+A+SG + + Sbjct: 1 MLSFDKVSTYYGKIQALHDVSVEVKKGEIVTLIGANGAGKSTLLMTLCGSPQAASGSIRY 60 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 EG+++ L + IMR+ +A+ PEGRRVF LTV ENL MG FF + + ++ V LF Sbjct: 61 EGEELVGLPSSTIMRKSIAVVPEGRRVFSRLTVEENLAMGGFFTDKDDYQVQMDKVLELF 120 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRLKER QRAGTMSGGEQQMLAIGRALMSKP+LLLLDEP+LGLAP++I QIF+II +R Sbjct: 121 PRLKERYEQRAGTMSGGEQQMLAIGRALMSKPKLLLLDEPSLGLAPIIIQQIFEIIEQLR 180 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 GVTVFLVEQNAN+AL +ADR YVLENG +VM DTGA LL N VR AYLG Sbjct: 181 REGVTVFLVEQNANQALKLADRAYVLENGRIVMHDTGAALLTNPKVRDAYLG 232 >mll3974 Non COG Length = 242 Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 148/236 (62%), Positives = 183/236 (77%), Gaps = 3/236 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L V T+YG I AL+GV + V++GEIV LIGANGAGK+TL+MT+ G PRA +G + F Sbjct: 6 LLDIKGVETYYGNIRALNGVDVTVKEGEIVALIGANGAGKSTLMMTIFGAPRARTGTITF 65 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 G DITQL THEI R +A SPEGRR+FP +TV+ENL+MGA + + ++ +E VF LF Sbjct: 66 AGTDITQLPTHEIARMRIAQSPEGRRIFPRMTVMENLQMGASLDNLKHYDEDVEKVFTLF 125 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI- 179 PRLKER AQR GT+SGGEQQML+IGRALM++P+LLLLDEP+LGLAPL++ QIFD IR + Sbjct: 126 PRLKERIAQRGGTLSGGEQQMLSIGRALMARPKLLLLDEPSLGLAPLIVKQIFDAIRELN 185 Query: 180 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYL--GH 233 R G+TVFLVEQNA AL +A RGYV+ NG+V MS TG LLAN +VR AYL GH Sbjct: 186 RTQGLTVFLVEQNAFGALKLATRGYVMVNGNVTMSGTGKELLANPEVRAAYLEGGH 241 >SMc01948 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 241 Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/235 (61%), Positives = 184/235 (78%), Gaps = 1/235 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L V T+YG I AL+GV + V +GEIV LIGANGAGK+TL+MT+CG P+A +G V F Sbjct: 5 LLHVRSVETYYGNIRALNGVDMEVHRGEIVALIGANGAGKSTLMMTICGSPQARTGSVHF 64 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 +GQDIT+L THEI R +A SPEGRR+FP +TVLENL+MGA + + ++ +E VF LF Sbjct: 65 DGQDITRLPTHEIARLRIAQSPEGRRIFPRMTVLENLQMGASLDNLKHFKEDVEKVFTLF 124 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI- 179 PRLKER AQR GT+SGGEQQML+IGRALM++P+LLLLDEP+LGLAPL++ IF+ I+ + Sbjct: 125 PRLKERQAQRGGTLSGGEQQMLSIGRALMARPKLLLLDEPSLGLAPLIVKGIFEAIKVLN 184 Query: 180 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 + G+TVFLVEQNA AL ++DRGYV+ NG V MS +G +LLAN +VR AYL G Sbjct: 185 KNEGLTVFLVEQNAFGALKLSDRGYVMVNGRVTMSGSGKDLLANPEVRAAYLEGG 239 >AGc4396 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 242 Score = 289 bits (739), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 141/235 (60%), Positives = 186/235 (79%), Gaps = 1/235 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L+ V T+YG I AL GV + V+KGEIV+LIGANGAGK+TL+MT+CG P+A +G+VIF Sbjct: 6 LLKVQGVETYYGNIRALAGVDVEVKKGEIVSLIGANGAGKSTLMMTICGSPQARTGQVIF 65 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 +G+DITQL TH I R+ +A SPEGRR+FP +TVLENL+MGA + + ++ +E +F +F Sbjct: 66 DGEDITQLPTHLIARKRIAQSPEGRRIFPRMTVLENLQMGANLDNLKYFKEDVEKIFVMF 125 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI- 179 PRLKER +QR GT+SGGEQQML+IGRALM++P+LLLLDEP+LGLAPL++ IF+ I+ + Sbjct: 126 PRLKERQSQRGGTLSGGEQQMLSIGRALMARPKLLLLDEPSLGLAPLIVKGIFEAIKKLN 185 Query: 180 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 +E G+TVFLVEQNA AL ++DR YV+ NG V MS +G LLA+ VR AYL G Sbjct: 186 KEEGLTVFLVEQNAFAALKLSDRAYVMVNGKVTMSGSGRELLADPQVRAAYLEGG 240 >BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 249 Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 137/235 (58%), Positives = 181/235 (77%), Gaps = 1/235 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L +KV T+YG I AL G+ + V++GEIV LIGANGAGK+TL+MT+ G PRA +GR++F Sbjct: 13 LLSVEKVETYYGNICALKGIDMTVDEGEIVALIGANGAGKSTLMMTIFGSPRARTGRILF 72 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 G+DIT + HEI + +A SPEGRR+FP +TVLENL+MGA + + ++ ++ +F LF Sbjct: 73 NGKDITSMPPHEIAKLRIAQSPEGRRIFPRMTVLENLQMGASLDNQQYFDEDVKLMFDLF 132 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI- 179 PRLKER QR GT+SGGEQQMLAI RALM +P+LLLLDEP+LGLAPL++ QIF+ I+ + Sbjct: 133 PRLKERINQRGGTLSGGEQQMLAIARALMVRPKLLLLDEPSLGLAPLIVKQIFEAIKELN 192 Query: 180 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 R G+TVFLVEQNA AL +ADRGYV+ NG + MS +G LL++ +VR AYL G Sbjct: 193 RTQGLTVFLVEQNAFGALKLADRGYVMVNGSITMSGSGRELLSDPEVRAAYLEGG 247