BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0173.p (178 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanac... 123 2e-28 BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans 109 3e-24 YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis 107 1e-23 PA3446 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi... 100 3e-21 ycbP [R] COG0431 Predicted flavoprotein Eco Escherichia coli K12 97 2e-20 ECs1020 [R] COG0431 Predicted flavoprotein Ecs Escherichia coli ... 97 2e-20 ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O1... 97 3e-20 lin2445 [R] COG0431 Predicted flavoprotein Lin Listeria innocua 94 2e-19 PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi... 69 7e-12 AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tum... 68 9e-12 >RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanacearum Length = 214 Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/111 (54%), Positives = 87/111 (78%), Gaps = 2/111 (1%) Query: 50 VVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVLSSLN 109 V++ATPVY+AAYSG+LK FLDLLPQ GL DK+VLP+ATGGS +H LA+DYALRPVLSSL Sbjct: 70 VILATPVYQAAYSGLLKTFLDLLPQSGLRDKVVLPIATGGSLAHTLAIDYALRPVLSSLA 129 Query: 110 PKHVLPSIYATEAQVTWSEEKGLVLDAPIEARVDEGVAQLSASL-LALHKA 159 + +LP I+A +AQ+ +++ G +D ++ R+D+G+ ++ ++ LA H A Sbjct: 130 ARVILPGIFAADAQIGAADD-GFAVDPALQQRLDDGIERVHQAIALARHPA 179 >BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans Length = 178 Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 2/125 (1%) Query: 31 DWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGS 90 ++ +K + VA A V+VA+PVYKA+Y+GILK +LDLLPQ GL +K VLPL +GG+ Sbjct: 52 NFQSEPLKRTHSMVAAADGVIVASPVYKASYTGILKTYLDLLPQDGLRNKAVLPLMSGGT 111 Query: 91 QSHMLALDYALRPVLSSLNPKHVLPSIYATEAQVTWSEEKG--LVLDAPIEARVDEGVAQ 148 H+LA+DY ++PVL+SL +H+L +YA + Q+ W ++ + I+ R+D+ Sbjct: 112 FGHLLAIDYGMKPVLNSLGARHILGGVYALDTQLEWQDKDAGTFRIAEEIKLRLDKATKD 171 Query: 149 LSASL 153 L ++ Sbjct: 172 LMTAM 176 >YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis Length = 193 Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 51/102 (50%), Positives = 75/102 (73%) Query: 29 RADWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATG 88 RA++N +V A +A +A A +++ATP+YKA++SG LK LDLLP+ L K+VLPLATG Sbjct: 49 RANFNSPDVSAFVAQLATADGLLIATPIYKASFSGALKTLLDLLPERALDHKVVLPLATG 108 Query: 89 GSQSHMLALDYALRPVLSSLNPKHVLPSIYATEAQVTWSEEK 130 GS HMLA+DYAL+PVL++L + VL ++ ++QV + E+ Sbjct: 109 GSIGHMLAVDYALKPVLTALKAQEVLHGVFVDDSQVVFHGEQ 150 >PA3446 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa Length = 197 Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 10/121 (8%) Query: 19 RRGQGGAGHX----------RADWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAF 68 RRG A H RA + V A + A ++VATPVYKA++SG LK Sbjct: 29 RRGVEVASHQVLDFPAEDLLRARLDSPPVLALAEQIGRADGLLVATPVYKASFSGALKVL 88 Query: 69 LDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVLSSLNPKHVLPSIYATEAQVTWSE 128 LDLLP+ L K+VLP ATGGS +HMLA+DYAL+PVL++L + VL ++A + Q+ ++ Sbjct: 89 LDLLPERALEHKVVLPFATGGSSAHMLAVDYALKPVLAALKAQEVLHGVFAVDKQIAYAT 148 Query: 129 E 129 E Sbjct: 149 E 149 >ycbP [R] COG0431 Predicted flavoprotein Eco Escherichia coli K12 Length = 191 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/95 (50%), Positives = 69/95 (72%) Query: 30 ADWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGG 89 A ++ +K + +A ++VATPVYKAAYSG LK LDLLP+ L K+VLPLATGG Sbjct: 50 ARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGG 109 Query: 90 SQSHMLALDYALRPVLSSLNPKHVLPSIYATEAQV 124 + +H+LA+DYAL+PVLS+L + +L ++A ++QV Sbjct: 110 TVAHLLAVDYALKPVLSALKAQEILHGVFADDSQV 144 >ECs1020 [R] COG0431 Predicted flavoprotein Ecs Escherichia coli O157:H7 Length = 191 Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 64/85 (75%) Query: 46 EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 105 +A ++VATPVYKAAYSG LK LDLLP+ L K+VLPLATGG+ +H+LA+DYAL+PVL Sbjct: 66 QADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYALKPVL 125 Query: 106 SSLNPKHVLPSIYATEAQVTWSEEK 130 S+L + +L ++A ++QV K Sbjct: 126 SALKAQEILHGVFADDSQVIDYHHK 150 >ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O157:H7 EDL933 Length = 191 Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 64/85 (75%) Query: 46 EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 105 +A ++VATPVYKAAYSG LK LDLLP+ L K+VLPLATGG+ +H+LA+DYAL+PVL Sbjct: 66 QADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYALKPVL 125 Query: 106 SSLNPKHVLPSIYATEAQVTWSEEK 130 S+L + +L ++A ++QV K Sbjct: 126 SALKAQEILHGVFADDSQVIDYHHK 150 >lin2445 [R] COG0431 Predicted flavoprotein Lin Listeria innocua Length = 181 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/95 (46%), Positives = 63/95 (66%) Query: 30 ADWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGG 89 AD+ ++ A + + +S V++ATP++KAAYSG+LKA+LDLLP L K+VLPL GG Sbjct: 51 ADFTHPDIHLANSEIESSSGVIIATPIFKAAYSGVLKAYLDLLPLKALKGKVVLPLGLGG 110 Query: 90 SQSHMLALDYALRPVLSSLNPKHVLPSIYATEAQV 124 S H+LAL YAL PVL L + +L + + Q+ Sbjct: 111 SNGHLLALQYALDPVLKELGAEIILKGQFTVDKQI 145 >PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa Length = 186 Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 35 AEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHM 94 AE++A L + A ++VA+PVY+ +Y G+LK DL+ L D VL ATGG++ H Sbjct: 62 AELQAVLDEIESADLLLVASPVYRGSYPGLLKHLFDLIDLNALIDTPVLLAATGGTERHA 121 Query: 95 LALDYALRPVLSSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARV 142 L LD+ LRP+ S + +YA+EA + ++ P++AR+ Sbjct: 122 LVLDHQLRPLFSFFQAITLPIGVYASEADF----DNYRIVSEPLKARI 165 >AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 200 Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 6/122 (4%) Query: 29 RADWNDAEVKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATG 88 RAD D + + V A +VV +PVY+A+Y+G LK DL+ L K V+ ATG Sbjct: 56 RADQLDEAGRRIIDAVEIADVLVVGSPVYRASYTGALKHLFDLVDFRALQGKRVVLAATG 115 Query: 89 GSQSHMLALDYALRPVLSSLNPKHVLPSIYATEAQVTWSEEKGLVLDAP-IEARVDEGVA 147 G+ H L L++ RP+ V ++YA EA T G L P +EAR++ VA Sbjct: 116 GTPLHGLMLEHQFRPLFGFFGAVTVPTTVYAVEADFT-----GYTLSNPEVEARIERAVA 170 Query: 148 QL 149 +L Sbjct: 171 EL 172