BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0151.p (85 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum 148 3e-36 XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c 121 3e-28 PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa 111 4e-25 RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum 104 5e-23 PA2715 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa 91 9e-19 VC0804 [C] COG1146 Ferredoxin Vch Vibrio cholerae 89 3e-18 SMc03875 [C] COG1146 Ferredoxin Sme Sinorhizobium meliloti 80 2e-15 AGc4989 [C] COG1146 Ferredoxin Atu Agrobacterium tumefaciens str... 77 8e-15 BMEI0278 [C] COG1146 Ferredoxin Bme Brucella melitensis 75 3e-14 CC0654 [C] COG1146 Ferredoxin Ccr Caulobacter vibrioides 75 3e-14 >RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum Length = 108 Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 72/86 (83%), Positives = 81/86 (94%), Gaps = 1/86 (1%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRS-WPS 59 VDCFREGPNFL IDPDECIDCAVCVAECPVNAIYAEEDVPADQQ++IA+NAEL+++ WPS Sbjct: 23 VDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINAELAQAGWPS 82 Query: 60 ITKTKAPLPEAEEWKDKTDKLQYLQR 85 ITKTK+PLP+AEEWKD DK QYL+R Sbjct: 83 ITKTKSPLPDAEEWKDVKDKEQYLER 108 >XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c Length = 107 Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 56/85 (65%), Positives = 66/85 (77%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EGPNFL IDPDECIDC +C ECP NAIY EEDVP +Q+Q IALNAEL+++WP + Sbjct: 23 VDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEEDVPTEQKQCIALNAELAKAWPVV 82 Query: 61 TKTKAPLPEAEEWKDKTDKLQYLQR 85 T + P+P+A EW K DKL LQR Sbjct: 83 TVRREPMPDAAEWDGKPDKLALLQR 107 >PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa Length = 107 Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 50/85 (58%), Positives = 65/85 (76%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EGPNFL I PDECIDCA+C ECP AI++E++VP + Q++I LN+EL+ WP+I Sbjct: 23 VDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPENMQEFIELNSELAEVWPNI 82 Query: 61 TKTKAPLPEAEEWKDKTDKLQYLQR 85 T+ K LP+AEEW KLQ+L+R Sbjct: 83 TEKKDALPDAEEWDGVAGKLQHLER 107 >RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum Length = 112 Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 5/85 (5%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRS--WP 58 +DCF GPNFL IDPD CIDC++C ECPV AI+AE DVPADQ+++IALNA+LSR WP Sbjct: 23 MDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEADVPADQREFIALNAQLSRRADWP 82 Query: 59 SITKTKAPLPEAEEW---KDKTDKL 80 +T+ + PL + W KDK D L Sbjct: 83 RLTQVQPPLADHARWAQVKDKRDAL 107 >PA2715 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa Length = 112 Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 2/87 (2%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSR--SWP 58 VDCF EGPNFL I PDECIDCA+C ECPV AI AE++VP Q+Q+IALN EL+ +W Sbjct: 23 VDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALNGELAAHPNWT 82 Query: 59 SITKTKAPLPEAEEWKDKTDKLQYLQR 85 IT+ K + + W KL L R Sbjct: 83 QITRKKPAPDDHDAWFGLPGKLAELDR 109 >VC0804 [C] COG1146 Ferredoxin Vch Vibrio cholerae Length = 107 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 57/84 (67%) Query: 2 DCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSIT 61 D F EGPNF+ I+P ECIDC +CV EC AI+ E+++ DQ+ +I LNAEL+ WP++T Sbjct: 24 DAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDELVGDQRIFIELNAELAEHWPNLT 83 Query: 62 KTKAPLPEAEEWKDKTDKLQYLQR 85 + K + +A +W +KL L++ Sbjct: 84 EVKPAMEDAAKWDGVPNKLDMLEK 107 >SMc03875 [C] COG1146 Ferredoxin Sme Sinorhizobium meliloti Length = 112 Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EG NFL I PDECIDC VC ECP AI + D ++ LNAE S WP+I Sbjct: 23 VDCFYEGENFLVIHPDECIDCGVCEPECPAGAI--KPDTEPGLDMWLKLNAEFSTQWPNI 80 Query: 61 TKTKAPLPEAEEWKDKTDKLQ 81 T + PLPEA+E +K + Sbjct: 81 TVKRDPLPEAKEMDGVEEKYE 101 >AGc4989 [C] COG1146 Ferredoxin Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 128 Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EG NFLAI+PDECIDC VC ECP AI + D +++ +N E + WP+I Sbjct: 39 VDCFYEGENFLAINPDECIDCGVCEPECPAEAI--KPDTEPGLDKWLKINTEYAAIWPNI 96 Query: 61 TKTKAPLPEAEEWKDKTDKLQ 81 T + P+PEA+E KL+ Sbjct: 97 TIKRDPMPEAKEMDGVEGKLE 117 >BMEI0278 [C] COG1146 Ferredoxin Bme Brucella melitensis Length = 112 Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EG N L I+PDECIDC VC ECP AI D +++ LNAE + WP+I Sbjct: 23 VDCFYEGENMLVINPDECIDCGVCEPECPAEAI--SPDTEPGLDKWLELNAEYAAKWPNI 80 Query: 61 TKTKAPLPEAEEWKDKTDKL-QYLQ 84 T K LPEA+E KL QY Sbjct: 81 TAKKDALPEAKEMDGVAGKLEQYFS 105 >CC0654 [C] COG1146 Ferredoxin Ccr Caulobacter vibrioides Length = 113 Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 1 VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60 VDCF EG NFL I+PDECIDC VC ECPV+AI + + AD +++ +NA+ ++ WP+I Sbjct: 23 VDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTEDEAD-GKWLKINADYAKVWPNI 81 Query: 61 TKTKAPLPEAEEWKDKTDKLQ 81 T P + E+++ +T K + Sbjct: 82 TVKGEPPADREDFERETGKFE 102