BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0138.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3349 [P] COG2608 Copper chaperone Rso Ralstonia solanacearum        58   5e-09

>RSc3349 [P] COG2608 Copper chaperone Rso Ralstonia solanacearum
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 3  TTFTVNDMTCNHCAGVITKAVKEVDANAKVDITVADKRVVIDSSLPAQQFAEAIEEAGYT 62
          TTF+V  M+C HC   +T+AV+++DA A+V + ++ + V + S        +AIE+AGY 
Sbjct: 2  TTFSVEGMSCGHCVAAVTRAVQQIDATAQVQVDLSSQTVAVRSGAGTDALRQAIEQAGY- 60

Query: 63 PVAA 66
          PV A
Sbjct: 61 PVKA 64