BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0128.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1727 [S] COG5569 Uncharacterized conserved protein Atu Agroba...    65   5e-11
SMc02284 Non COG                                                       58   7e-09

>AGl1727 [S] COG5569 Uncharacterized conserved protein Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 94

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 29 GQIRKIDAAAGKLTIRHGEIANLQMPAMTMVFRAAPE-IVGQVREGEQVRFTADRIDGAL 87
          G ++K+D AA K+TI H ++ NL MP MTMVFR   + I+ +++EG  + F A+R DG L
Sbjct: 29 GTVKKVDVAAKKVTITHEDLKNLDMPGMTMVFRVKDDAILAKLKEGADIEFIAERADGKL 88

Query: 88 TVTSLE 93
           V  ++
Sbjct: 89 VVAQVK 94


>SMc02284 Non COG
          Length = 94

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 42 TIRHGEIANLQMPAMTMVFRAAPE-IVGQVREGEQVRFTADRIDGALTVTSLE 93
          T+ H ++  L+MP MTMVFR   E ++ +++EG+Q+ F A+R+DG LTVT ++
Sbjct: 42 TLMHEDLKELEMPGMTMVFRVKDEALLSKLKEGDQIEFVAERVDGKLTVTEVK 94