BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0117.p         (403 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1161 [GEPR] COG0477 Permeases of the major facilitator superfa...    70   6e-12
BH0472 [GEPR] COG0477 Permeases of the major facilitator superfa...    62   3e-09

>BH1161 [GEPR] COG0477 Permeases of the major facilitator superfamily Bha
           Bacillus halodurans
          Length = 406

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 169/381 (44%), Gaps = 33/381 (8%)

Query: 34  RHAAMSLSAALPCDIVLYLLLPMYADQFHIS-LAEAGVLLAANRLVRIAGYRWVARFYAQ 92
           R  A+  + AL  D ++ ++LP+Y ++F ++ + + GVLL+ NRL+R+     V  FY  
Sbjct: 8   RWIAILTAIALLGDSMILIVLPLYWEEFGLTAIWQVGVLLSVNRLIRLPINPLVGWFYRT 67

Query: 93  RGDRPTCTLAVCAAIVCALGYTMASGFWALLPLRLLWGMAFAGLNLS--TQAMSTSNPQG 150
              R    +A+  A+V  L Y    GF  LL  R+LWG+A+A + L      +  SN + 
Sbjct: 68  YERRTGFFIAMSLALVTTLAYGYVQGFIWLLIARILWGVAWAFIRLGGYLTVLDHSNSRN 127

Query: 151 AARRSGRSRGVIAIGPMLWLPTAALLAPHIGPRLVFALVAATALLGL-LAARRLPQHAYA 209
                G   G+  +G ++ +    ++        V  L A  A   L    + +P+   +
Sbjct: 128 RGELIGLYNGLWGLGGLVGMLAGGIVVEQTSIAFVTTLFAGAACFSLPTLFKVIPR---S 184

Query: 210 PPQPRRWKLPNALDWW----------SFLEGLTLDGLFIVGLAYMSKQSFGAD------- 252
             +  R K     DW+          SF  GL + G+F   L+   ++    +       
Sbjct: 185 VSEQVRDKTDGKGDWFSIHTGSILLLSFTTGLVIFGVFATTLSPFVERMIDDNWTWHGLV 244

Query: 253 --GELVAGVLMALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLF 310
                VAG++ A+R+A +  ++P+ G   +R    K  V  S+   +A + F  G +  F
Sbjct: 245 IGAATVAGLIQAVRWAWDPFVAPMVGKRLDRMRT-KGPVVFSMLLMIASLFFIAGSVHDF 303

Query: 311 AGVIVILRALQL-----PLLAPIVAARTAPE-QRVHALAGRAIWRDIGAGMGPMLAGLLL 364
               V L   QL       L   +AA  A +  RV  +    I  D+GA +GP++  L++
Sbjct: 304 VLASVFLLVFQLISTIFVTLTDSLAAEVANQTDRVRMMTAHTIAIDLGAALGPLIGFLVV 363

Query: 365 PVMSSLWLYSLAASALALAAI 385
             +   +LY + +S L L AI
Sbjct: 364 ATVHLSFLYFMTSSWLLLLAI 384


>BH0472 [GEPR] COG0477 Permeases of the major facilitator superfamily Bha
           Bacillus halodurans
          Length = 417

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 175/395 (44%), Gaps = 36/395 (9%)

Query: 21  MTTPDLRQADLHSRHAAMSLSAALPCDIVLYLLLPMYADQFHI-SLAEAGVLLAANRLVR 79
           MT  +        +  A+  +  L  D +LY+ LP+Y  +  + SL E G++L+ NR VR
Sbjct: 1   MTKSEHAPESKSVKVVALVTALCLLGDSLLYVALPIYYREVGLQSLWEVGIILSLNRFVR 60

Query: 80  IAGYRWVARFYAQRGDRPTCTLAVCAAIVCALGYTMASGFWALLPLRLLWGMAFAGLNLS 139
           I     V + Y     R    +AV   +V  +GY +  GF+  + LRLLWG+A++ L L 
Sbjct: 61  IPINPLVGKCYQHVTLRTGLLIAVSLTLVTTIGYGVGYGFFVWVILRLLWGIAWSFLRLG 120

Query: 140 --TQAMSTSNPQGAARRSGRSRGVIAIGPMLWLPTAALLAPHIG---PRLVFALVAATAL 194
                +  +      +  G+  G+  +G +  +    +LA  IG     ++F ++A  A+
Sbjct: 121 GLFTVLEEATDSNRGKLMGQYNGLYRLGSLGGMLGGGILASFIGLSATAIIFGVLAVLAI 180

Query: 195 ------LGLLAARRLPQHAYAPPQPRRWKL--PNALDWWSFLEGLTLDGLFIVG--LAYM 244
                 +  LA  R  Q      + +R  L   +A+   S    L L    + G  L+ +
Sbjct: 181 PYVLRYVPSLAQERTGQPEGDSTEKKRKGLYGRHAILAISSGLLLALFLQGLFGSTLSLL 240

Query: 245 SKQSFGADGELV---------AGVLMALRYAGEIVLSPL-GGWLAERFGAVKVLVTLSLA 294
             + +G    +V         +GVL  +R+  E  L+ L G W     G + + +   + 
Sbjct: 241 MLEHYGETIYIVGMIVGVTALSGVLQGVRWVWEPFLAVLFGHWSDGDRGRLPLFILFLIM 300

Query: 295 TCVALVGFGGGLL------WLFAGVIVILRALQLPLLAPIVAARTAPEQRVH-ALAGRAI 347
           T    +G+G  +L      WL A ++V++ +  L  L   + +  A  Q  +  +    +
Sbjct: 301 TA---LGYGAMVLSLPLIIWLAAVIVVMVASTALTTLIDALTSDVAKGQDANRVMTSYTV 357

Query: 348 WRDIGAGMGPMLAGLLLPVMSSLWLYSLAASALAL 382
           + D+GA +GP+LA  LL +  SL    L+++ + L
Sbjct: 358 FLDVGAALGPLLAYFLLDIGLSLTFVYLSSAVIFL 392