BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0081.p (112 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA210 [K] COG1733 Predicted transcriptional regulators Atu Agr... 161 3e-40 BH0737 [K] COG1733 Predicted transcriptional regulators Bha Baci... 103 7e-23 BS_yybR [K] COG1733 Predicted transcriptional regulators Bsu Bac... 103 9e-23 BS_ydeP [K] COG1733 Predicted transcriptional regulators Bsu Bac... 102 2e-22 AGc1831 [K] COG1733 Predicted transcriptional regulators Atu Agr... 98 5e-21 mll7749 [K] COG1733 Predicted transcriptional regulators Mlo Mes... 96 2e-20 alr2106 [K] COG1733 Predicted transcriptional regulators Nos Nos... 94 5e-20 BH0508 [K] COG1733 Predicted transcriptional regulators Bha Baci... 92 4e-19 MTH1285 [K] COG1733 Predicted transcriptional regulators Mth Met... 89 2e-18 SMc01493 [K] COG1733 Predicted transcriptional regulators Sme Si... 88 4e-18 >AGpA210 [K] COG1733 Predicted transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 107 Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 74/106 (69%), Positives = 94/106 (88%) Query: 1 MKENMSGCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALEN 60 MK+ ++GCSVE +M LLGGRWRLL+ SYL++GPKRFN+LRR +PGISQRML+LDLRALE+ Sbjct: 1 MKDTVTGCSVELAMHLLGGRWRLLIASYLIDGPKRFNELRRLIPGISQRMLSLDLRALED 60 Query: 61 AGLVKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFGLWLKERDA 106 A L+ RTVYPT PV+VEY +TE+G+RL VV V++EFGLWLK+R+A Sbjct: 61 ASLIARTVYPTVPVKVEYALTEEGRRLGKVVAVVQEFGLWLKDRNA 106 >BH0737 [K] COG1733 Predicted transcriptional regulators Bha Bacillus halodurans Length = 118 Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 48/98 (48%), Positives = 72/98 (73%) Query: 7 GCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAGLVKR 66 GC VE ++ ++GG+W+ +++ YLLE +RFN+LRR +PGI+QR+L+L LR LE G+V R Sbjct: 13 GCPVEATLDVIGGKWKGVILYYLLEEKRRFNELRRLMPGITQRILSLQLRELEKDGIVHR 72 Query: 67 TVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFGLWLKER 104 V+P P RVEY +TE G+ LEP++ M+++G K R Sbjct: 73 EVFPEVPPRVEYSITEFGRTLEPIINQMRDWGEEYKTR 110 >BS_yybR [K] COG1733 Predicted transcriptional regulators Bsu Bacillus subtilis Length = 125 Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 48/95 (50%), Positives = 67/95 (70%) Query: 4 NMSGCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAGL 63 N GC VE ++ ++GG+W+ +L ++++G KRFN+ RR P I+QRMLTL LR LE G+ Sbjct: 10 NKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGI 69 Query: 64 VKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFG 98 V R VY P +VEY +TE G+ LEP+V MKE+G Sbjct: 70 VHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWG 104 >BS_ydeP [K] COG1733 Predicted transcriptional regulators Bsu Bacillus subtilis Length = 128 Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 4/114 (3%) Query: 3 ENMSGCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAG 62 ++ GC VE ++ ++GG+W+ +L+ +L++G KRFN+ R+ P I+QRMLTL LR LE G Sbjct: 13 DDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDG 72 Query: 63 LVKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFGLWLKER----DAVRVGND 112 ++ R VY P +VEY +TE G+ LEPV+ MK++G K+R +A R D Sbjct: 73 VIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEAARKAED 126 >AGc1831 [K] COG1733 Predicted transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 129 Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 44/96 (45%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Query: 4 NMSGCSVEESMRLLGGRWRLLLVSYLL-EGPKRFNDLRRDVPGISQRMLTLDLRALENAG 62 N GC VE ++ L G+W+ +++ +L+ EG RFN+LRR +P ++QRMLT LR LE AG Sbjct: 11 NFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLTKQLRELEEAG 70 Query: 63 LVKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFG 98 L+ RTV+P P RV+Y +T G+ + PV+ +K +G Sbjct: 71 LISRTVFPVVPPRVDYALTPLGETMRPVISALKSWG 106 >mll7749 [K] COG1733 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 120 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 64/92 (69%) Query: 7 GCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAGLVKR 66 GC+VE ++R + G+W+ +++ +L EG RFN++RR +P +QRMLT LR LE GL+ R Sbjct: 14 GCTVEGTLRYIDGKWKGVVLYHLFEGTLRFNEIRRRIPNCTQRMLTNQLRELEADGLIDR 73 Query: 67 TVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFG 98 +YP P +VEY +T G+ L PV+ +KE+G Sbjct: 74 KIYPEVPPKVEYSLTPRGRSLAPVITALKEWG 105 >alr2106 [K] COG1733 Predicted transcriptional regulators Nos Nostoc sp. PCC 7120 Length = 110 Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 66/92 (71%) Query: 8 CSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAGLVKRT 67 C VE +++++GGRW++L++ L+ G KRF +L+R +PGI+Q+MLT LR +E+ G++ R Sbjct: 13 CEVETTLKVIGGRWKVLIIRELMLGVKRFGELQRALPGITQKMLTQQLREMEDDGIIHRQ 72 Query: 68 VYPTSPVRVEYEVTEDGKRLEPVVKVMKEFGL 99 VY P +VEY +T G L+P++ M E+G+ Sbjct: 73 VYAQIPPKVEYSLTPVGVSLQPILYAMHEWGV 104 >BH0508 [K] COG1733 Predicted transcriptional regulators Bha Bacillus halodurans Length = 102 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/98 (43%), Positives = 64/98 (65%) Query: 1 MKENMSGCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALEN 60 M N E ++ LLG +W L++ LL GPKRF D++ +PG+S R+LT ++ LE Sbjct: 1 MDYNTMCPKYEAAIDLLGKKWTGLIIRVLLAGPKRFKDIKAQIPGMSDRILTERMKELEQ 60 Query: 61 AGLVKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFG 98 +V R VYP PVR+EYE+TE GK L PV++ ++++G Sbjct: 61 LEVVIRHVYPEKPVRIEYELTEKGKDLTPVIEAIQQWG 98 >MTH1285 [K] COG1733 Predicted transcriptional regulators Mth Methanothermobacter thermautotrophicus Length = 131 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 64/91 (70%) Query: 8 CSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALENAGLVKRT 67 CSVE ++ +GG+W+ L++ L +G RF+++ R +P I+QRMLT LR LE++GL+ R Sbjct: 26 CSVEVAVNEIGGKWKSLVLCTLKDGKLRFSEINRRIPKITQRMLTRTLRELESSGLINRE 85 Query: 68 VYPTSPVRVEYEVTEDGKRLEPVVKVMKEFG 98 VYP P RVEY +TE GK + P++ + E+G Sbjct: 86 VYPEVPPRVEYCLTEKGKSVIPILDALCEWG 116 >SMc01493 [K] COG1733 Predicted transcriptional regulators Sme Sinorhizobium meliloti Length = 156 Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 63/99 (63%) Query: 1 MKENMSGCSVEESMRLLGGRWRLLLVSYLLEGPKRFNDLRRDVPGISQRMLTLDLRALEN 60 M ++ C V + M +GG+W L++ L +GP RF+ LRR +P ISQRMLT LR L+ Sbjct: 19 MPVDIDNCPVRDVMDNIGGKWNSLMILSLADGPLRFSQLRRLIPDISQRMLTQTLRDLQR 78 Query: 61 AGLVKRTVYPTSPVRVEYEVTEDGKRLEPVVKVMKEFGL 99 G ++RTVYPT P VEY +T+ G+ V++V ++ L Sbjct: 79 DGYLRRTVYPTQPPSVEYSLTDLGRSFLAVLRVFVDWSL 117