BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0080.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3714 [TK] COG2197 Response regulator containing a CheY-like re... 129 6e-30 RSc3078 [TK] COG2197 Response regulator containing a CheY-like r... 123 3e-28 YPO1218 [TK] COG2197 Response regulator containing a CheY-like r... 121 1e-27 ZrcsB [TK] COG2197 Response regulator containing a CheY-like rec... 120 2e-27 rcsB [TK] COG2197 Response regulator containing a CheY-like rece... 120 2e-27 ECs3106 [TK] COG2197 Response regulator containing a CheY-like r... 120 2e-27 STM2270 [TK] COG2197 Response regulator containing a CheY-like r... 120 2e-27 RSc3388 [TK] COG2197 Response regulator containing a CheY-like r... 120 2e-27 PA4080 [TK] COG2197 Response regulator containing a CheY-like re... 112 5e-25 mll4697 [TK] COG2197 Response regulator containing a CheY-like r... 103 2e-22 >PA3714 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 213 Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 123/212 (58%), Gaps = 5/212 (2%) Query: 9 VAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEESD 68 V + DDH + L +R L+ ++RI + + L+ L+ PC+++ITD MP S Sbjct: 5 VILVDDHALTLIGMRYLLSAYDDLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPG--SQ 62 Query: 69 ESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACLAT 128 ++DG LV++++ +P +IV T + N A++ L ++G+ +++KR D+L A Sbjct: 63 QADGLRLVQKVRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSKRGMLDDLPKAI--R 120 Query: 129 QSSKQLYFPVSLRGELEMSWAQ-GDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSRT 187 + ++ + S+ LE+ A+ G A+ +LT E+EV+RL+ G ++GEI +RL R+ Sbjct: 121 HAGRRPFISRSIAHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRS 180 Query: 188 PSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 TIS K++AMRKLGL S+A L Y G+ Sbjct: 181 KQTISAQKSSAMRKLGLDSNAGLFIYIRENGL 212 >RSc3078 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 222 Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 115/213 (53%), Gaps = 3/213 (1%) Query: 10 AIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEESDE 69 AIADDHP V+ A+R+ + R+ + E + + L+ L R C++VITD+AMP S Sbjct: 8 AIADDHPGVVAAVRHLVCRVEGFEVVGEATSADGLLALLGRVHCDVVITDYAMP--ASRH 65 Query: 70 SDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACLATQ 129 DG L++ + HP +++V T + AV+ R+ R G+ + +K + P ++ A Sbjct: 66 GDGIVLLEFLLRRHPGVRVVVLTMLETHAVVDRMLRAGIRVIASKADSPHHILEGVHAAL 125 Query: 130 SSKQLYFP-VSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSRTP 188 + + P R + D A L + ELEV+R++V G+++ EI RL+R+ Sbjct: 126 AGRAYLSPRFGPRLDSAHPGHAPDDHGALDRLGKRELEVLRMYVGGETVSEIARRLNRSV 185 Query: 189 STISTHKNNAMRKLGLSSDAELIKYAFSTGMIN 221 TIS K +MRKL L+++A L +A G++ Sbjct: 186 KTISAQKQKSMRKLRLATEAALFDFAAQHGLLG 218 >YPO1218 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 217 Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 6/211 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 L+V IADDHPIVL +R L ++ + + E + LIN L + ++ITD +MP ++ Sbjct: 4 LNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDANVLITDLSMPGDK 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 DG L+K IK +P +IV T NN A++ + + + ++ K+ P +L A Sbjct: 64 Y--GDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLDLDIDGIVLKQGAPADLPKALA 121 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q K+ + P S+ LE A G G + L+ E EV+RLF EG + EI +L+R Sbjct: 122 ALQKGKK-FTPESVAKLLEKISANGYG---DKRLSPKESEVLRLFAEGFLVTEIARKLNR 177 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAFST 217 + TIS+ K +AM KLG+ +D L+ Y S Sbjct: 178 SIKTISSQKKSAMLKLGVDNDIALLNYLSSV 208 >ZrcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 216 Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 6/213 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 ++V IADDHPIVL +R L ++ + + E + LIN L + ++ITD +MP ++ Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 DG L+K IK PS +IV T NN A++ + + + ++ K+ P +L A Sbjct: 64 Y--GDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q K+ + P S+ LE A G G + L+ E EV+RLF EG + EI +L+R Sbjct: 122 ALQKGKK-FTPESVSRLLEKISAGGYG---DKRLSPKESEVLRLFAEGFLVTEIAKKLNR 177 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 + TIS+ K +AM KLG+ +D L+ Y S + Sbjct: 178 SIKTISSQKKSAMMKLGVENDXALLNYLSSVTL 210 >rcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 216 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 6/213 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 ++V IADDHPIVL +R L ++ + + E + LIN L + ++ITD +MP ++ Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 DG L+K IK PS +IV T NN A++ + + + ++ K+ P +L A Sbjct: 64 Y--GDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q K+ + P S+ LE A G G + L+ E EV+RLF EG + EI +L+R Sbjct: 122 ALQKGKK-FTPESVSRLLEKISAGGYG---DKRLSPKESEVLRLFAEGFLVTEIAKKLNR 177 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 + TIS+ K +AM KLG+ +D L+ Y S + Sbjct: 178 SIKTISSQKKSAMMKLGVENDIALLNYLSSVTL 210 >ECs3106 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ecs Escherichia coli O157:H7 Length = 216 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 6/213 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 ++V IADDHPIVL +R L ++ + + E + LIN L + ++ITD +MP ++ Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 DG L+K IK PS +IV T NN A++ + + + ++ K+ P +L A Sbjct: 64 Y--GDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q K+ + P S+ LE A G G + L+ E EV+RLF EG + EI +L+R Sbjct: 122 ALQKGKK-FTPESVSRLLEKISAGGYG---DKRLSPKESEVLRLFAEGFLVTEIAKKLNR 177 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 + TIS+ K +AM KLG+ +D L+ Y S + Sbjct: 178 SIKTISSQKKSAMMKLGVENDIALLNYLSSVTL 210 >STM2270 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 216 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 6/213 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 ++V IADDHPIVL +R L ++ + + E + LIN L + ++ITD +MP ++ Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 DG L+K IK PS +IV T NN A++ + + + ++ K+ P +L A Sbjct: 64 Y--GDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q K+ + P S+ LE A G G + L+ E EV+RLF EG + EI +L+R Sbjct: 122 ALQKGKK-FTPESVSRLLEKISAGGYG---DKRLSPKESEVLRLFAEGFLVTEIAKKLNR 177 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 + TIS+ K +AM KLG+ +D L+ Y S + Sbjct: 178 SIKTISSQKKSAMMKLGVENDIALLNYLSSVTL 210 >RSc3388 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 215 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 3 LKKVLHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAM 62 + L + ADDHP++L L + + P +I + G L+ L+ T C++V+TD+ M Sbjct: 1 MSPFLSIVAADDHPVILMGLATAIQQFPRQKIIAQAHDGHALLALLESTDCDVVVTDYHM 60 Query: 63 PNEESDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELI 122 + + SDG L+ R++A HP ++V T + N A++R + ++GV +++KR+ + Sbjct: 61 NGDAA--SDGMQLLTRLRARHPQRAVVVCTMVCNPALLRCMQQLGVRRIVSKRDDLAHVG 118 Query: 123 NACLATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICV 182 +A A+ Y P + LE + G A + L+ E EVV L+V G ++ EI Sbjct: 119 HAVAASACGLPYYSPTIV---LEGGFGIG-AREAFQGLSAREREVVSLYVSGMAVSEIAS 174 Query: 183 RLSRTPSTISTHKNNAMRKLGLSSDAELIKYAFSTGM 219 RL + T+ST K A+RKLGL+ + +L +Y + G+ Sbjct: 175 RLGSSIKTVSTQKTMALRKLGLARETDLFQYVRTAGL 211 >PA4080 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 214 Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 8/214 (3%) Query: 1 MNLKKVLHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDF 60 M+L ++ V +ADDHP + + EL++ + + +V +LI L C++VI D+ Sbjct: 1 MSLHRI-RVMVADDHPAISLGISYELSQCGSLEMLGQVSNSTELIGRLNEGDCDVVIVDY 59 Query: 61 AMPNEESDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDE 120 MP + DG AL+ ++ +P +L+V+T +NN +IR + + G+ +++K + Sbjct: 60 TMPGGK--YGDGLALLSLLRRRYPHLQLVVFTMLNNPGLIRAILKQGINCILSKSDSTSH 117 Query: 121 LINACLATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEI 180 L+ A A S Q YF S+R + LT E E+VRLF G ++ EI Sbjct: 118 LLAAVSAAYSRNQ-YFSPSIRDIFVNQVLS----SHNERLTPREAEIVRLFGSGLTITEI 172 Query: 181 CVRLSRTPSTISTHKNNAMRKLGLSSDAELIKYA 214 R R+ TIST K +AM+KLG+ DA+LI+YA Sbjct: 173 AERSHRSVQTISTQKVSAMKKLGIKRDADLIRYA 206 >mll4697 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 215 Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 6/209 (2%) Query: 7 LHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDFAMPNEE 66 + + IADDHPIV +R L + E + E D GE + + +IVI D+++P Sbjct: 6 IKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPV-- 63 Query: 67 SDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDELINACL 126 +G + I+ P T++++YT + ++IR R G + K E EL+ A + Sbjct: 64 ---LNGLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELV-AAV 119 Query: 127 ATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEICVRLSR 186 A Q YF + + + G +R LT E EVVR EG+S I RL Sbjct: 120 AALIRGQTYFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGV 179 Query: 187 TPSTISTHKNNAMRKLGLSSDAELIKYAF 215 + T+ +H+ AMRKLGL + +L++YA Sbjct: 180 SVKTVDSHRTTAMRKLGLRNAVDLVRYAI 208