BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0035.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl383 [E] COG0765 ABC-type amino acid transport system, permeas... 241 1e-63 SMa0079 [E] COG0765 ABC-type amino acid transport system, permea... 212 5e-55 SMa0501 [E] COG0765 ABC-type amino acid transport system, permea... 206 4e-53 AGc2567 [E] COG0765 ABC-type amino acid transport system, permea... 194 1e-49 AGc2584 [E] COG0765 ABC-type amino acid transport system, permea... 190 2e-48 AGpA329 [E] COG0765 ABC-type amino acid transport system, permea... 184 1e-46 YPO3256 [E] COG0765 ABC-type amino acid transport system, permea... 178 1e-44 RSc2104 [E] COG0765 ABC-type amino acid transport system, permea... 175 6e-44 AGl664 [E] COG0765 ABC-type amino acid transport system, permeas... 174 2e-43 mlr4898 [E] COG0765 ABC-type amino acid transport system, permea... 166 5e-41 >AGl383 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/232 (53%), Positives = 169/232 (72%), Gaps = 4/232 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIF-GAIISIHGSKPARLAVTS 59 M Y FQF + Q+ ++LL G LTI+LS LS++ G A GI ++ SI+G R+ V Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGG-IVRIIVDG 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE+IR+TPFLVQLFI++FGLP +G +V A+ AAL+ MT+NL AYSTEI+RAG+ A+H S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 QIEA +AL T++Q+ RHV++ PA+ KVYP+L SQF LMMLASSI SAIS EL A A Sbjct: 120 QIEAGEALGFTKYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAF 179 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR--RRLGVARPR 229 ++++T+RSFE+Y+VV ++Y+ LAL RL L+G+ +F RR R+ A P Sbjct: 180 VESQTYRSFEVYIVVTLIYLALALSLRLILALVGMWLFGRRVARKTMTALPE 231 >SMa0079 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 222 Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 106/216 (49%), Positives = 148/216 (68%) Query: 3 YDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSYVE 62 Y+F FA + DQLLVGA LT+RLS +M+ GL V +F A G R + Y+E Sbjct: 2 YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61 Query: 63 LIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQIE 122 +IR+TPFLVQ+F IFFG+PS+G+++ N AAL+A+ VN GAY TEI+RAG+ +IH Q+E Sbjct: 62 IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121 Query: 123 AAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLLDA 182 A AL ++R Q+ R+VV+ PAL VYPAL SQF +ML +S+VS ISA++L A N L + Sbjct: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181 Query: 183 ETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFK 218 TF SFE+Y+ V ++Y+ L++ F F+ + FK Sbjct: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFK 217 >SMa0501 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 228 Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 154/222 (69%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y FQF + +L Q++ G LTI LS + + G+A+GIF A++S S RL V Y Sbjct: 1 MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE++R+TP LVQ+F+IFFGLP+IG+++ + +A+ +N G Y EIVR G+ A H SQ Sbjct: 61 VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA++L ++ +Q +R+V+L PALEKV+ + SQ L+ML++S+VSAI E+LT A + Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRR 222 +ETFR+ EIYLVV ++Y++L +FR + GL++F R RR Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRR 222 >AGc2567 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 223 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 155/220 (70%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M+Y F F ++ ++ Q+ G +T+ L A+ + G+A+GIF A + G K R V +Y Sbjct: 1 MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIR+TPFL+QLF IFFGLPS+G+Q+ AA +AM VNLGAYS EI+RAG+ A Q Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 EA +LAMTR++ RHVVL P+L++++PAL+SQ ++ML SS+VS I+AE+LT AN + Sbjct: 121 FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR 220 + TFR+FE Y+V V+Y++LA+L R + G ++F RR Sbjct: 181 QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRR 220 >AGc2584 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 155/222 (69%), Gaps = 4/222 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIH--GSKPARLAVT 58 M + F +F D + G LLTI LSA +++ G + + A++++ G+ R V Sbjct: 37 MNFSLHFEAVFAESDLIWRGILLTIGLSATAIVLGTMIAV--ALVAMRSLGNGTIRFCVD 94 Query: 59 SYVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHP 118 SYVEL+R+TPFLVQLF++FFGLP +G ++ AAL AMT+NL AY+TEI+RAG+ +IH Sbjct: 95 SYVELLRNTPFLVQLFMVFFGLPLVGFRMSGTQAALFAMTLNLSAYATEIIRAGVESIHR 154 Query: 119 SQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATAN 178 SQ+EA +L+++R QV R+VV+ PA K++PAL+SQF LM+LASSI S IS EL+ A+ Sbjct: 155 SQVEAGLSLSLSRLQVFRYVVMKPAFAKIWPALSSQFVLMLLASSICSFISVPELSGAAS 214 Query: 179 LLDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR 220 +++ TFRSFE Y+VV V+Y+LLAL ++ G +F+RR Sbjct: 215 IIEQRTFRSFETYIVVTVIYLLLALALKIILAWFGHWLFRRR 256 >AGpA329 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 222 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 149/219 (68%) Query: 4 DFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSYVEL 63 F F ++++ DQ + G L T+ L+ + GL +GI GA++ G KPAR+ V +Y+E+ Sbjct: 3 SFNFRPLWRYEDQFIDGVLTTLLLTVSATAIGLIIGIIGAVVLRSGPKPARIGVRAYIEI 62 Query: 64 IRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQIEA 123 IR+TP L+Q+FIIFF LP+IG++ A++VA+++ GAY++EI+R+G+ +I PSQIEA Sbjct: 63 IRNTPALLQIFIIFFVLPTIGLKFSPIHASIVALSIYFGAYASEILRSGLNSIPPSQIEA 122 Query: 124 AQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLLDAE 183 L +TRWQV+ +VL PA+ +YP++ SQF L++L +SI S +S +EL A +D+ Sbjct: 123 GVCLGLTRWQVLSRIVLPPAIRNIYPSMTSQFVLLLLGTSIASQVSTDELFHAAGFIDSR 182 Query: 184 TFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRR 222 T+RSFE+Y + +Y L + F++ F L+G VF+ R Sbjct: 183 TYRSFEVYALTCGIYFTLVVFFKIVFALVGRAVFRWPTR 221 >YPO3256 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 222 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 144/206 (69%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y FA ++ +L +LL G L TI L+ ++ I G+A+GI GA I + R Y Sbjct: 1 MTYQLNFAALWPYLPELLSGLLTTIELTVMATIGGIALGICGAAIRCGNTVILRRLWGGY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE++R+TPF+VQLF I FGLP++G+++ A AAL+AMT+NLGAYSTEI+R+G+ A Q Sbjct: 61 VEIVRNTPFVVQLFFIVFGLPALGLKLSAGQAALLAMTINLGAYSTEIIRSGIQASAKGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 EAA+ L ++R Q V+L P+L+++YPAL SQ ++ML S++VS +S EELT ANL+ Sbjct: 121 WEAARVLGLSRSQTFFRVILPPSLQRIYPALVSQCIIVMLGSAVVSQVSFEELTFAANLI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFR 206 + TF SFE+YLV +LY+L A++ R Sbjct: 181 QSRTFLSFEVYLVTTLLYLLFAIVMR 206 >RSc2104 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 248 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 96/194 (49%), Positives = 128/194 (65%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F F +F + QL GA T+ L+A + G A+G+ G + P Y Sbjct: 1 MAYQFDFGAVFSYSGQLAQGAGFTLALTAAGAVLGGAIGLAGGVCRAWRIAPFNGLFKVY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE IR+TPFL+QL +FFGLPS+G+Q++ AAL+ VNLGAY TEIVRAG+ Q Sbjct: 61 VEAIRNTPFLIQLMFVFFGLPSLGLQINEWQAALLTTVVNLGAYITEIVRAGIQETPRGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA ALAM+RW RHVVL PAL+KV+PAL+SQ ++ML +S+VS I+A++LT AN + Sbjct: 121 LEAASALAMSRWTCFRHVVLRPALQKVWPALSSQIVIVMLGTSVVSQIAAQDLTFAANFI 180 Query: 181 DAETFRSFEIYLVV 194 + FR+FE YLVV Sbjct: 181 QSRNFRAFETYLVV 194 >AGl664 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 137/217 (63%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F+ + + L +LL+ L TI L+ M +G+ G + K R V + Sbjct: 49 MSYSLDFSAVIERLPELLLACLATIGLAIAGMSLATVLGVLGVVARRSRFKLLRGLVIGF 108 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE IR+TPFLVQ+F IFF LP IG++++ + A++A+ +N GAY+ EI+R G+ +I Q Sbjct: 109 VEAIRNTPFLVQIFFIFFALPQIGIKLNPTVTAIIALALNGGAYAIEIIRGGVDSIPKGQ 168 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EA AL + R Q+ RH++L PAL VYP+L SQF ++ L +S+ ++I+A ELT+ A + Sbjct: 169 VEAGLALGLHRAQIFRHIILKPALRAVYPSLTSQFIMLTLTTSVCTSIAAYELTSVAQKI 228 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVF 217 +A+TFRSFE+Y + +LY++++ L F LI F Sbjct: 229 EADTFRSFEVYFSITLLYLVISSLMMGIFALISRASF 265 >mlr4898 [E] COG0765 ABC-type amino acid transport system, permease component Mlo Mesorhizobium loti Length = 218 Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 140/218 (64%), Gaps = 6/218 (2%) Query: 7 FAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSYVELIRS 66 FA++ L + GA TI L A++ + G + I GA +G R A+ YVE++R+ Sbjct: 3 FAWLPGALGDIAHGAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVMRN 62 Query: 67 TPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQIEAAQA 126 TPFLVQLF IFFGLPS+G+++D +AA++AMT+N+ AY+ EIV AG+ A+ Q EAA A Sbjct: 63 TPFLVQLFFIFFGLPSLGIRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAALA 122 Query: 127 LAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLLDAETFR 186 L + QV +VL AL+ +YPAL SQ +MML S++VS I+ ELT A++L A TFR Sbjct: 123 LGLRPRQVFIKIVLPQALKIIYPALTSQIVIMMLESAVVSQIAVRELTYEADMLQARTFR 182 Query: 187 SFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 SFE Y VV ++Y+ +++ R L+V RR LG Sbjct: 183 SFETYFVVTLVYLAMSMALRR------LLVTGGRRALG 214