BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0034.p (267 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transd... 296 5e-80 AGl385 [ET] COG0834 ABC-type amino acid transport/signal transdu... 266 5e-71 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 197 2e-50 SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transd... 176 6e-44 AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 159 5e-39 AGl669 [ET] COG0834 ABC-type amino acid transport/signal transdu... 154 1e-37 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 154 1e-37 AGl667 [ET] COG0834 ABC-type amino acid transport/signal transdu... 153 4e-37 AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transd... 142 7e-34 AGl407 [ET] COG0834 ABC-type amino acid transport/signal transdu... 124 2e-28 >AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 296 bits (757), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 151/269 (56%), Positives = 190/269 (70%), Gaps = 4/269 (1%) Query: 1 MSIKKIFNAKFLALTLAAACAVATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKG 60 MSI + F K +A +A + T SA+AQS+ D+ K+G + IGV+ G PPFGSVDA+G Sbjct: 2 MSIFQSF--KSVAAAIAVCAGIFTGFSANAQSVDDIVKRGSVKIGVLVGAPPFGSVDAQG 59 Query: 61 TPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT 120 P+GYD DVA LIGKYLG+PV +V L PP+RIPALESGKVD L ATLAPTPERAK+V+FT Sbjct: 60 NPVGYDADVATLIGKYLGVPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMFT 119 Query: 121 IPYSGFELSIVAPVGSNYKKLDDLVKKKVGVSRGSTNDTAL-TRLAPPGTVLVRFEDDST 179 PYS F++ I + + +K +DL VGV+RGS+ + R G ++RF+DD+T Sbjct: 120 NPYSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDAT 179 Query: 180 VTQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNN 239 QAL S QV AI+ P+ AN +K RG EVKF +S+QPNSMTVRK + +L QWLNN Sbjct: 180 TMQALFSGQVQAIAGPDAQANAAIKLRGDTTTEVKFFFSIQPNSMTVRKDAVDLHQWLNN 239 Query: 240 FIYYVKLNGELDAISRKWAG-PLPNLPVF 267 IYY+K NGELDAI+RKW G PLP LP F Sbjct: 240 TIYYIKQNGELDAIARKWVGTPLPVLPTF 268 >AGl385 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 294 Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 171/237 (72%), Gaps = 1/237 (0%) Query: 32 SIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVPLVPPAR 91 S++++T +GK+ IGV++G PP G VD KG P GYDVDVANLIG YL LPVE+VPL PPAR Sbjct: 58 SLSEITARGKVKIGVLTGAPPMGMVDEKGNPSGYDVDVANLIGSYLSLPVELVPLTPPAR 117 Query: 92 IPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDDLVKKKVGV 151 IPAL++GKVD L ATLAPT ERAK+V+FT PYS F + I++ ++ LD L K+V V Sbjct: 118 IPALQTGKVDFLVATLAPTGERAKTVMFTQPYSAFNMDIISGKDQKFENLDSLKGKRVSV 177 Query: 152 SRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRGQGKI 211 +RGS+ +TAL + G +V +EDDST QALL+ QVDA+++P+T+ I+K R + + Sbjct: 178 NRGSSQETALRKANVEGLEIVVYEDDSTSAQALLAGQVDAVALPSTVGEAIIKQRPEAGL 237 Query: 212 EVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLPNLPVF 267 +V F + Q NSM + +EL+QWLN IY +K++G+LD IS KW G PLP LP F Sbjct: 238 QVGFTFFQQGNSMATKIEDFELRQWLNTSIYLMKMSGDLDRISVKWTGRPLPQLPSF 294 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/250 (42%), Positives = 151/250 (60%), Gaps = 2/250 (0%) Query: 16 LAAACAVATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGK 75 L AA A A+AQ++ + G + +G++ PPFG +DA P GYD DVA L+ K Sbjct: 18 LGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPDGYDADVAKLLAK 77 Query: 76 YLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVG 135 LG+ V IVP+ P RIP L+S +VD+L A+L T ERAK+V F+ PY+G + + Sbjct: 78 ELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPYAGISIGVFGAAD 137 Query: 136 SNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIP 195 K +DL K +GV+R ST DTA T++AP + RF+DD++ QALLS QV+ I + Sbjct: 138 LAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQALLSGQVELIGVS 197 Query: 196 NTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISR 255 N +A +I ++ G+ K S Q + VRKGS E+ +++N F+ VK +G+L+AI Sbjct: 198 NVVAAQI-EAAAPGRFNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDKVKADGQLNAIHE 256 Query: 256 KWAG-PLPNL 264 KW G PLP Sbjct: 257 KWLGSPLPEF 266 >SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 265 Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 1/243 (0%) Query: 26 ASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVP 85 A+ASA S+ D+ + K+ IGV PPFG + + P G DVDVA L+ K LG+ +E+VP Sbjct: 23 ATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVELELVP 82 Query: 86 LVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDDLV 145 + +RIP+L++GKVD + A+ ERA SV F+ PY G I+AP + K L DL Sbjct: 83 VTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKSLADLA 142 Query: 146 KKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKS 205 K+VGV RG+ ++ L+ G LVRF+DDST AL+S QVDAI N +A ++ + Sbjct: 143 GKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAAQLQER 202 Query: 206 RGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLPNL 264 E K Y + +R+ +L WLN ++ K +GEL AI KW P+P L Sbjct: 203 YPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKTPIPEL 262 Query: 265 PVF 267 P F Sbjct: 263 PSF 265 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 142/252 (56%) Query: 6 IFNAKFLALTLAAACAVATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGY 65 +F+ + L A + + + +A A ++ D++ +G I + V PPFGSV P GY Sbjct: 1 MFSRRLLLAIAAVSVTLGFSPAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQGY 60 Query: 66 DVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSG 125 D+DVANLIG+ LG+ VE+VP+ R+P L++ KVD++ ++L P+R K + F+ Y+ Sbjct: 61 DIDVANLIGEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAYAP 120 Query: 126 FELSIVAPVGSNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALL 185 F + AP K +DL K +GV+RG+ D LT++AP T + R+ED++ A L Sbjct: 121 FFNGVFAPDSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISAFL 180 Query: 186 SNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVK 245 + QV+A++ N +A I+ + E+KF P + + K L + +N I K Sbjct: 181 AGQVEAVATGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIATAK 240 Query: 246 LNGELDAISRKW 257 +G L+ I++KW Sbjct: 241 TDGSLNTIAQKW 252 >AGl669 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 278 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 22 VATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPV 81 + T A A A+++ + GKI IG+ P+G +++ G GYD D+A YLGL V Sbjct: 24 ILTPAGADARTLEEAKSSGKIVIGIQGDNAPWGFINSSGVQEGYDADLARGFADYLGLKV 83 Query: 82 EIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKL 141 E VPL RIP+L +GKVD L A++ TPERAK+V + PY+ +S+ A Sbjct: 84 EFVPLAVANRIPSLRTGKVDALFASMGMTPERAKNVQYAQPYAHNVMSVYATKDKKIANF 143 Query: 142 DDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANE 201 DDL VG + S DTALT A ++RF+DD+ QA+LS Q++AI N + Sbjct: 144 DDLTGMTVGAPKSSPMDTALTAGAGTKANILRFDDDAATIQAILSGQIEAIG-GNQFYGD 202 Query: 202 IVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-P 260 + + G EVKF NS R G + + LN ++ K NG+L + KW P Sbjct: 203 RLAAAGGKDYEVKFDLVTLYNSAATRPGEKDWNEALNAWLDKAKANGDLAKVYAKWMKRP 262 Query: 261 LPNLPV 266 +P+ P Sbjct: 263 VPDFPA 268 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 1/236 (0%) Query: 28 ASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVPLV 87 A A ++A++ K G I + + + PPFGS+ GYD+D+ANL+ K LG+ E+VP+ Sbjct: 29 AHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELVPVT 88 Query: 88 PPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDDLVKK 147 RIP L +GKVD++ ++L ERAK + FT Y+ F S+ P + K DL K Sbjct: 89 STNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADLAGK 148 Query: 148 KVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRG 207 +GV+RGST D ALT +AP + R+ED++ Q+ L QV +++ N +AN + + Sbjct: 149 TIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNERTR 208 Query: 208 QGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLP 262 +++VKFP P + V KG L + +N I +K +G L+ +S++W PLP Sbjct: 209 LRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLP 264 >AGl667 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 124/230 (53%), Gaps = 1/230 (0%) Query: 28 ASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVPLV 87 ASA ++ + KGK+ IG+ P+G V++ G G D D+ YLG+ VE VPL Sbjct: 56 ASAATVEEAKAKGKVVIGIQGDNSPWGFVNSSGVQDGLDADIGKAFADYLGVKVEFVPLA 115 Query: 88 PPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDDLVKK 147 RIPAL +GKVD+L AT+A T ERAKS+ ++ PY G S+ P DDL Sbjct: 116 VANRIPALLTGKVDVLFATMAMTAERAKSIQYSKPYVGNVFSVYGPKDKKIAGFDDLTSL 175 Query: 148 KVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRG 207 VGV + S DTA+T A ++RF+DD+ QAL+S QV+A+ N + + Sbjct: 176 NVGVPKSSAMDTAITAGAGSKANILRFDDDAANIQALISGQVEAVG-GNMFYGDRLNKAA 234 Query: 208 QGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKW 257 +GK E KF + N R G + + +N F+ +K +G+L I KW Sbjct: 235 EGKYESKFDLTTMYNGAGTRPGEKDWNETINAFLDKIKSDGQLAKIYDKW 284 >AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 259 Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 32 SIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVPLVPPAR 91 ++AD+T GK+ +GV+ P+G DA+G G DV++A ++ K L +EIVPL +R Sbjct: 25 TLADVTSNGKLRVGVLLDAAPWGYKDAEGKDTGLDVELARIMAKDLNAELEIVPLTGASR 84 Query: 92 IPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDD---LVKKK 148 IP+L + KVD+L A TPERA+ V+F+ PY+ L + G + +K+DD L K+ Sbjct: 85 IPSLLADKVDVLIAAAGATPERAQQVMFSQPYAAVSLGV---FGGDGEKIDDVSGLAGKQ 141 Query: 149 VGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRGQ 208 + V++GST DT LT AP LVRFED + A L+ Q D + + +A ++ Sbjct: 142 IAVAKGSTLDTWLTDNAPE-VKLVRFEDTPSAIAAFLAGQADYFAENSAIAVKVADDNPG 200 Query: 209 GKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGEL 250 + + + + P + V++G W+N F+++ +NG+L Sbjct: 201 KNVAIVYRIRLSPAHVGVKQGEQNFLNWINTFLFFHNMNGDL 242 >AGl407 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 120/244 (49%), Gaps = 5/244 (2%) Query: 28 ASAQSIADLTKKGKITIGVVSGTPPFGSVDAKGTPIGYDVDVANLIGKYLGLPVEIVPLV 87 A A + D+ G + VV PP G+ D P+G+DVD N + K LG+ EIV Sbjct: 20 AKADKLDDIISSGTLRCAVVLDFPPMGARDDANNPVGFDVDYCNDLAKVLGVTAEIVETP 79 Query: 88 PPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKKLDDLVKK 147 P RIPAL SG+VD+ A+ + T ERAK+V T+PY FE+++ A S K +D+ K Sbjct: 80 FPERIPALMSGRVDVGVASTSDTLERAKTVGMTVPYFAFEMAVTANDKSGIKSFEDMKGK 139 Query: 148 KVGVSRGSTNDTALTRLAPPGTV--LVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKS 205 VG + G+ AL + V ++ + V AL Q+DA +T+A VKS Sbjct: 140 TVGATAGTFEAIALEKTVKEWGVGEFRPYQTQADVFLALSQGQIDATVSTSTVAQSTVKS 199 Query: 206 RGQGKIEV--KFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKW-AGPLP 262 + V K PY + S+ + Y +LN FI G + +KW G +P Sbjct: 200 GKFAGVSVVGKAPYDIDYVSLFTNRDEYGFINYLNLFINQQVRTGRYAELYKKWVGGEVP 259 Query: 263 NLPV 266 +L V Sbjct: 260 SLTV 263