BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0011.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 247 1e-65 RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 216 2e-56 CC3562 Non COG 163 2e-40 PA0446 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 94 2e-19 RSc0796 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 93 3e-19 PA3592 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 86 8e-17 BMEII1019 [C] COG1804 Predicted acyl-CoA transferases/carnitine ... 84 2e-16 AF0020 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 79 6e-15 STM0072 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 79 8e-15 TVN1161 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 79 1e-14 >PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Pae Pseudomonas aeruginosa Length = 409 Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 146/206 (70%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQMVDVALYEA+F MMESMVPEFD G +RERTG +PGI PS+ +T+ +G ++ I Sbjct: 204 GEGQMVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSIHTSADGRHVQIGA 263 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 NGDAIF+R M AIGR+D+A+DP LA NDGR R +E+ I +W ++Q +E LA L A Sbjct: 264 NGDAIFRRFMQAIGRDDLASDPRLASNDGRDARRDELYGVIDRWVASQPLEEVLAVLARA 323 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELG 182 +VP +IYS +DM D QFLAR+MF + DG P ++PGI PK+S TPG W+GPELG Sbjct: 324 EVPASRIYSAEDMFRDPQFLAREMFLSARLPDGKPFRMPGIVPKLSATPGSADWVGPELG 383 Query: 183 AHSDEILQSLGYDEAHIKMLRDQGVV 208 H+D +L LGYD I LR +G + Sbjct: 384 EHTDALLAELGYDSEGIAALRREGAI 409 >RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Rso Ralstonia solanacearum Length = 405 Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/206 (50%), Positives = 137/206 (66%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ++DVALYE+VFN+ ES++PE+ G VR+ GGALPGI PSN Y G ++IA Sbjct: 195 GKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSNAYRCAGGAYVLIAA 254 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 NGD IF+RLM +GR D+A+DPGLARNDGR R +EIDAAI W T +I+ LA L A Sbjct: 255 NGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTGTLSIDDVLAALHEA 314 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELG 182 DVP G+IY+V D+ D + AR + E + G V +PG+ PK+S TPG + P LG Sbjct: 315 DVPGGRIYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLSGTPGAVQASAPRLG 374 Query: 183 AHSDEILQSLGYDEAHIKMLRDQGVV 208 H+ E+L+ G +A I L QGV+ Sbjct: 375 QHTREVLRRHGLTDAQIDALASQGVI 400 >CC3562 Non COG Length = 433 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 119/207 (57%), Gaps = 1/207 (0%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ+VD A+YE+V +ME++V E+D G VRER+G LPGI PSN Y T G ++I Sbjct: 226 GKGQVVDTAIYESVLTVMENLVTEYDLTGYVRERSGAVLPGIAPSNVYPTRSGELVLIGA 285 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 N D +F+RL +GR D+A+DP + R E+DA I W + Q IE L L+ A Sbjct: 286 NQDTLFRRLCELMGRPDLADDPRYRDHAARGAHQAELDARIAAWTADQDIEDLLPKLEGA 345 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELG 182 + G+IY DM+ D Q+ AR+ +K+ P+++ETPG +W GP LG Sbjct: 346 GLATGRIYRAPDMLTDPQYAARESIVTVPHPVFGEIKMQNAFPRLTETPGGVRWPGPTLG 405 Query: 183 AHSDEILQSL-GYDEAHIKMLRDQGVV 208 H+D +L + G I+ LR GV+ Sbjct: 406 EHTDAVLADVAGMSAEAIEGLRKAGVL 432 >PA0446 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Pae Pseudomonas aeruginosa Length = 407 Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 6/211 (2%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 V+G GQ +D+AL + + + + GV R G A P IVP + T +G I+ Sbjct: 200 VSGIGQHIDMALLDVQVACLANQTLNYLTTGVPPRRLGNAHPNIVPYQDFPTADGDMILT 259 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 GN D+ F++ + A+DP A N RV E + I+Q T + +L+ Sbjct: 260 VGN-DSQFRKFAELADHPEWADDPRFATNKARVANREVLIPLIRQATVLHTTAEWILSLE 318 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQ--HQFADGTPVKLPGITPKMSETPGQTKWLG 178 A VP G I + + D Q AR + + H A P I ++SETP + + Sbjct: 319 RAGVPCGPINDLAQVFADPQVQARGLRVELPHPLAGTVPQVASPI--RLSETPVEYRNPP 376 Query: 179 PELGAHSDEILQS-LGYDEAHIKMLRDQGVV 208 P LG H+DE+L++ LG D A ++ LRD V+ Sbjct: 377 PTLGQHTDEVLETLLGLDAAALERLRDGKVI 407 >RSc0796 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Rso Ralstonia solanacearum Length = 420 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ +D+AL + M+ +M + +G R G A P IVP T+ T +G IV G Sbjct: 215 GEGQYIDMALLDVQVAMLANMNTNYLASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVG 274 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 N D F+R + A ++A+DP A N RV + + + + L+AA Sbjct: 275 N-DGQFRRFVEAGANPELADDPRFATNPQRVANRDVLVPILADMVRRLGKAEWIRRLEAA 333 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELG 182 VP G I S+ ++ ++ Q AR + V L G +MS TP Q P LG Sbjct: 334 GVPCGPINSLDEVFDNEQVKARGLRVDLPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLG 393 Query: 183 AHSDEILQS-LGYDEAHIKMLRDQGVV 208 H++ +L+ L +A I LR QGV+ Sbjct: 394 EHTEAVLRDVLDLPQAQIAALRAQGVI 420 >PA3592 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Pae Pseudomonas aeruginosa Length = 395 Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 10/210 (4%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 V+G+GQ VD+ LY+ +++ +P + +G R+G A P I P ++Y TG + Sbjct: 192 VSGRGQSVDITLYDCGISLLHPHLPNYFASGRTPRRSGNAHPNIAPYDSYRTGTEPIFLA 251 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 GN D F RL +G +++ DP A N R E + A++ + + L Sbjct: 252 VGN-DRQFARLCEYLGADELPGDPRFADNGKRSVNREALKRALEDYLAAHDGRELAERLI 310 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADG--TPVKLPGITPKMSETPGQTKWLG 178 VP G I +V ++ R M + + G +PVKL S TP + Sbjct: 311 RLGVPCGAIATVDRVVEHPHTRHRGMVVELEGYRGIASPVKL-------SRTPASYRAAP 363 Query: 179 PELGAHSDEILQSLGYDEAHIKMLRDQGVV 208 P LG + E+L LG I L +G+V Sbjct: 364 PVLGGDTREVLAELGLSAEAIDALVRRGIV 393 >BMEII1019 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Bme Brucella melitensis Length = 415 Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 2/207 (0%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ +D+AL + + + + +G R G A IVP + + I+ G Sbjct: 203 GKGQHIDMALLDVQVAALCNQSQNYLVSGRPPGRYGNAHANIVPYQVFRASDRDFIIACG 262 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 N DA F L AIG D+ DP RN RV +EI + T T + + + Sbjct: 263 N-DAQFVSLCDAIGLPDLPKDPRFTRNSDRVIHRDEIIGILAAHFLTGTADEWIGRIHPR 321 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELG 182 VPVG I + +++ Q AR+M Q G K+S TP + K P LG Sbjct: 322 GVPVGAINDIARTLDEPQVKARNMLVQIPHPLNKDFVTVGSPFKLSGTPVEYKRAAPMLG 381 Query: 183 AHSDEILQSLG-YDEAHIKMLRDQGVV 208 H+D +LQ L D+ + L+ +G++ Sbjct: 382 EHTDTLLQQLAKLDDDRLNDLKSRGII 408 >AF0020 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Afu Archaeoglobus fulgidus Length = 420 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 20/220 (9%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ+VDVA +EA+ ++E + G+ RE G + P Y +G I I Sbjct: 205 GRGQVVDVAQFEAIARVIEMYYTMYHNLGINREGEGLRVFNTQPYGLYRVKDGW-IAIGA 263 Query: 63 NGDAIFKRLMSAIGR-----------EDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQT 111 G +++R + A+ + E+ A P ++ + E+D ++ + T Sbjct: 264 IGPGLYQRFIQALAKATGINPADYPYEECAASPEAVNSE----KGRELDRIFNEYLMSHT 319 Query: 112 IETALATLQAADVPVGKIYSVKDMMNDAQFLAR-DMFEQHQFADGTPVKLPGITPKMSET 170 E A VP ++ + +D++ D ++ R D+ E G VK GI PK SET Sbjct: 320 KEEVEKLFNAFRVPCSRVSTPEDVVRDRHWIERGDIIEVLDETTGRLVKQVGIVPKFSET 379 Query: 171 PGQTKWLG-PELGAHSDEILQS-LGYDEAHIKMLRDQGVV 208 PG+ W G P+LG+ + ++L+ L + I L+ +GVV Sbjct: 380 PGRI-WRGPPKLGSDTKKVLKGLLNLSDEQIDELKAKGVV 418 >STM0072 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Sty Salmonella typhimurium LT2 Length = 405 Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRER-TGGALPGIVPSNTYTTGEGMNIVIA 61 G+G+ +D+A+YE + M + + ++ G + R T G P Y +G IV+ Sbjct: 191 GKGESIDIAMYEVMLRMGQYFMMDYFNGGEICPRMTKGKDPYYAGCGLYKCADGY-IVME 249 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEE-----IDAAIQQWCSTQTIETAL 116 G IG + P + + R E ++ + W +T TI Sbjct: 250 LVGITQINECFKDIGLAHILGTPEVPEGTQLIHRVECPYGPLVEEKLDAWLATHTIADVQ 309 Query: 117 ATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKW 176 A ++ K+ ++ ++ + Q++AR+ Q Q DG K P I PK PG+ W Sbjct: 310 ARFAELNIACAKVLTIPELEGNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGKI-W 368 Query: 177 LG-PELGAHSDEILQSLGYDEAHIKMLRDQGV 207 G P G + IL+++GY EA IK L +G+ Sbjct: 369 RGMPSHGMDTAAILKNIGYSEADIKELVGKGL 400 >TVN1161 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Tvo Thermoplasma volcanium Length = 399 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 3/207 (1%) Query: 3 GQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIAG 62 G+GQ +D A+ ++ ++ F G + G A I P + T +G ++ AG Sbjct: 190 GEGQYIDTAMIDSAVGILTHQATYFFATGKDPVKLGSAHSSIAPYQAFRTKDGYIVITAG 249 Query: 63 NGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAA 122 + I++ L AI ++ DP N+ RV E+ I+Q+ + + A + L Sbjct: 250 S-QKIWENLCDAIEMPELKQDPRFMTNELRVKNRYELVPVIEQYLTRLSTSQAYSKLTKY 308 Query: 123 DVPVGKIYSVKDMMNDAQFLARDMFEQHQFAD-GTPVKLPGITPKMSETPGQTKWLGPEL 181 VP + +V + + Q RDM F+D VKL KMS TPGQ P L Sbjct: 309 GVPCSPVNTVSEALKSDQVNYRDMV-VGVFSDIYGKVKLINSPLKMSRTPGQIFSAPPVL 367 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H+ ++L+ G+ I L D + Sbjct: 368 GQHTIDVLKEFGFRSEEISNLIDSKTI 394