BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0007.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium ... 125 1e-28 STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella ty... 118 2e-26 RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia sol... 115 9e-26 mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium... 113 6e-25 PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella mu... 110 5e-24 SMb20667 [K] COG1609 Transcriptional regulators Sme Sinorhizobiu... 110 6e-24 STM3543 [K] COG1609 Transcriptional regulators Sty Salmonella ty... 100 4e-21 ECs4287 [K] COG1609 Transcriptional regulators Ecs Escherichia c... 99 1e-20 ZgntR [K] COG1609 Transcriptional regulators EcZ Escherichia col... 99 1e-20 gntR [K] COG1609 Transcriptional regulators Eco Escherichia coli... 99 2e-20 >AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS L +P VS ++ +AI+ LGYVP+++AGSL++RR I I+P Sbjct: 27 VSRVLADPALVSEDTRQKVMKAIEKLGYVPDRIAGSLSSRR----------TNFITAILP 76 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 +L N+ F D+ L DYQLL+G T YDL E ++RT + P A+VV G H Sbjct: 77 TLTNSNFADSAQGLANALRAADYQLLIGYTMYDLLEEERVIRTMMERRPDAIVVAGTVHT 136 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 + +L A P+ E+W++ E P VGFS+ VG A HL G T+I +G+R Sbjct: 137 KMASEVLMRAGIPIVEIWDVPEHPIDHAVGFSNYEVGRTAAKHLISLGFTKIGALGSRAD 196 Query: 181 ADRR 184 D + Sbjct: 197 GDVK 200 >STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 334 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 13/185 (7%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS L +P+ V P+ ++ +A+ GY+PN LAG LA+RR + +A V+VP Sbjct: 26 VSRALNSPQLVRPKTVEKVMQAVRVTGYIPNALAGGLASRRSKLIA----------VVVP 75 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 + N F DT+ +L E R Y +LL Y + E ELV T LS P +V+TG H Sbjct: 76 QINNNMFVDTIQSLSDELARRGYHILLCVAGYTEQTEAELVATLLSRRPDGVVLTGIHHT 135 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 + ++ A PV E+W++ P + VGFSH VG+ +L +G R G Sbjct: 136 IELKKVILNAAIPVVEIWDLTPTPLDMLVGFSHEKVGQATGEYLLSKGYRR---PGLLWT 192 Query: 181 ADRRA 185 ADRRA Sbjct: 193 ADRRA 197 >RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia solanacearum Length = 350 Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 111/218 (50%), Gaps = 17/218 (7%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS L PE VS R++ A+ GY P+ +AGSLA+ R R + ++P Sbjct: 43 VSRALNTPELVSADTLGRVREAVRQTGYTPDLVAGSLASNRSRLIVA----------LIP 92 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 ++A + F +T+AAL E YQLL+G + YD RE L+ + P +V+TG H+ Sbjct: 93 TIAGSVFQETIAALTTELAAAGYQLLIGQSGYDESREDALLDAIVGRRPAGIVLTGVAHS 152 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVG---- 176 + R L+ A PV E W+I P + VGFSH VG+ A +L Q+GA R A + Sbjct: 153 ASVRQKLQAAGVPVVETWDITRTPLDMLVGFSHQKVGQAAARYLKQRGAQRPAVITPNDR 212 Query: 177 ---ARMQADRRAPPASAAPGAQAAARPAGGGLRQRCAG 211 AR QA +A SA AA PAG G +R G Sbjct: 213 RAQARAQAFVKAFGNSAGIPVIAAESPAGLGDGRRALG 250 >mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti Length = 344 Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS LR PE VS L +I+ A+D LGYVP+ A +LA+ R GV+VP Sbjct: 31 VSRALREPERVSEELRRQIQAAVDELGYVPDPNARALASARAEVF----------GVLVP 80 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F + V + +++ LG T Y E L++ F S P AL+V G Sbjct: 81 SLTNNVFAEVVRGIYDSLSDSPFRIQLGNTHYSGLEEERLLQLFGSQRPAALIVAGIDQT 140 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 +R LL A PV ++ E G +P + VGFSH G HL + G RI F+GARM Sbjct: 141 PTSRKLLENAGCPVVQVMETGPDPVDMMVGFSHFDGGRTATEHLIEAGYRRIGFIGARMD 200 >PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella multocida Length = 332 Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 12/185 (6%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 +S YLR+P++V+P +I +AI+ GY+PN+ L+ + RA IGV+VP Sbjct: 23 ISRYLRHPDSVAPETQAKIAQAIEHFGYIPNRAPDILSNAKSRA----------IGVLVP 72 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F D + ++ D+ YQ +L Y +E+E + + + LS+ L+++ H+ Sbjct: 73 SLTNQVFADVIKGIELVSDKAGYQTMLAHYGYSMEKEEQRIESLLSYHVDGLILSENQHS 132 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 E T +L +A+ PV E+ E E +GF ++A + + + +G + + ARM Sbjct: 133 ERTLKMLEVANIPVVEIMECSEVGIQQAIGFDNIAAAQAMVETMIHRGHKNVVYFSARM- 191 Query: 181 ADRRA 185 D+R Sbjct: 192 -DKRT 195 >SMb20667 [K] COG1609 Transcriptional regulators Sme Sinorhizobium meliloti Length = 334 Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 10/185 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS LRN + S + R+ A++ LGYVPN++AG+LA+ AG RL + ++P Sbjct: 27 VSRVLRNHGSFSGKARERVLDAVERLGYVPNRIAGTLAS------AGSRL----VAFVIP 76 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F D + + + YQ + T+Y+ ERE LV L+W PTA+++ G H Sbjct: 77 SLTNIVFPDVLRGAGAVLEENRYQAVFSVTDYEPEREEALVAAMLAWRPTAVMLAGFEHT 136 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 E T +LR + V E+ +I L VGFS+ G A L ++G RI +VG + Sbjct: 137 EGTLKMLRASGCRVVELLDIDGTAIDLAVGFSNREAGRASAEFLLKRGYRRIGYVGHDLG 196 Query: 181 ADRRA 185 D RA Sbjct: 197 RDTRA 201 >STM3543 [K] COG1609 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 331 Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 14/202 (6%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS +LRNPE VS L +I A+D LGY+PN+ L+ RA IGV++P Sbjct: 22 VSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRA----------IGVLLP 71 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F + + ++ D H YQ +L Y E E E + + LSW+ L++T H Sbjct: 72 SLTNQVFAEVLRGIEAVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT 131 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARMQ 180 T ++ +A PV E+ + + VGF + + A + +G IA++GAR+ Sbjct: 132 PRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTAAIIARGHRHIAYLGARL- 190 Query: 181 ADRRAPPASAAPGAQAAARPAG 202 D R G + A R AG Sbjct: 191 -DERT--IIKQKGYEQAMRDAG 209 >ECs4287 [K] COG1609 Transcriptional regulators Ecs Escherichia coli O157:H7 Length = 331 Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS +LRNPE VS L +I A+D LGY+PN+ L+ RA IGV++P Sbjct: 22 VSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRA----------IGVLLP 71 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F + + ++ D H YQ +L Y E E E + + LSW+ L++T H Sbjct: 72 SLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT 131 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARM 179 T ++ +A PV E+ + + VGF + + + +G IA++GAR+ Sbjct: 132 PRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHRHIAYLGARL 190 >ZgntR [K] COG1609 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 321 Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS +LRNPE VS L +I A+D LGY+PN+ L+ RA IGV++P Sbjct: 12 VSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRA----------IGVLLP 61 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F + + ++ D H YQ +L Y E E E + + LSW+ L++T H Sbjct: 62 SLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT 121 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARM 179 T ++ +A PV E+ + + VGF + + + +G IA++GAR+ Sbjct: 122 PRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHRHIAYLGARL 180 >gntR [K] COG1609 Transcriptional regulators Eco Escherichia coli K12 Length = 313 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 1 VSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAARRDRALAGQRLLHRXIGVIVP 60 VS +LRNPE VS L +I A+D LGY+PN+ L+ RA IGV++P Sbjct: 22 VSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRA----------IGVLLP 71 Query: 61 SLANAFFTDTVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVTGCCHN 120 SL N F + + ++ D H YQ +L Y E E E + + LSW+ L++T H Sbjct: 72 SLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT 131 Query: 121 EATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVLAAHLHQQGATRIAFVGARM 179 T ++ +A PV E+ + + VGF + + + +G IA++GAR+ Sbjct: 132 PRTLKMIEVAGIPVVELMDSKSPCLDIAVGFDNFEAARQMTTAIIARGHRHIAYLGARL 190