BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0316.p (126 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0379 [S] COG2363 Uncharacterized small membrane protein Pae Ps... 107 7e-24 SA0540 [S] COG2363 Uncharacterized small membrane protein Sau St... 105 2e-23 BS_ywdK [S] COG2363 Uncharacterized small membrane protein Bsu B... 103 1e-22 BH3828 [S] COG2363 Uncharacterized small membrane protein Bha Ba... 93 2e-19 VC0897 [S] COG2363 Uncharacterized small membrane protein Vch Vi... 89 2e-18 lin0671 [S] COG2363 Uncharacterized small membrane protein Lin L... 89 4e-18 CC1231 Non COG 84 9e-17 STM2981 [S] COG2363 Uncharacterized small membrane protein Sty S... 79 3e-15 ygdD [S] COG2363 Uncharacterized small membrane protein Eco Esch... 79 3e-15 ZygdD [S] COG2363 Uncharacterized small membrane protein EcZ Esc... 79 3e-15 >PA0379 [S] COG2363 Uncharacterized small membrane protein Pae Pseudomonas aeruginosa Length = 125 Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/119 (52%), Positives = 76/119 (63%) Query: 4 RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63 R + L A F V GAF AHGLKK +S E LA++ T V YQ++HAL + VALL R Sbjct: 3 RPFLLLAAFFGFTGVALGAFAAHGLKKQLSAEYLAVFQTGVHYQLIHALALFGVALLATR 62 Query: 64 LGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122 L G + AG L GI++FSGSLYLL L+G LG +TPFGGV FLA WL + AA + Sbjct: 63 LDGRLVSAAGGLFTLGILLFSGSLYLLTLSGIGKLGIVTPFGGVSFLAGWLCLGLAAWR 121 >SA0540 [S] COG2363 Uncharacterized small membrane protein Sau Staphylococcus aureus N315 Length = 122 Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 1/119 (0%) Query: 4 RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63 + I LGALN +AVG GAFGAHGL+ IS+ L++W A TYQ+ H L ++ + ++ Sbjct: 2 KLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGT 61 Query: 64 LGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122 + WAG L+ AGI+ FSGSLY+L LT ++LGAITP GGV F+ W+++ A K Sbjct: 62 TS-INVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLIIATFK 119 >BS_ywdK [S] COG2363 Uncharacterized small membrane protein Bsu Bacillus subtilis Length = 113 Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Query: 4 RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63 + I LGA+N +AVG GAFGAHGL+ I ++ L +WHT V Y + HALG+ VA L + Sbjct: 2 KVFIILGAINALLAVGLGAFGAHGLEGKIPDKYLQVWHTGVQYHMYHALGLFVVAFLADK 61 Query: 64 LGG-AALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFG 105 L G ++ AG LM AGIV+FSGSLY+L++T +LGAITP G Sbjct: 62 LSGIGSVTTAGWLMFAGIVLFSGSLYILSVTQISILGAITPLG 104 >BH3828 [S] COG2363 Uncharacterized small membrane protein Bha Bacillus halodurans Length = 121 Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%) Query: 4 RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL-MP 62 + + LG++ M ++V GAFGAHGL+ +SE M+ + T V YQ++H +G++ V L+ + Sbjct: 2 KLFLLLGSIVMGLSVIIGAFGAHGLEPRLSERMMKNYQTGVQYQMIHGIGILVVGLVGLK 61 Query: 63 RLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122 L A L AG GI++FSGSLY +ALTG LGAITP GG+ F+A W+L+ A + Sbjct: 62 MLPSALLSAAGWSFFVGILLFSGSLYAMALTGVTKLGAITPIGGLAFIAGWILLGIAVVR 121 >VC0897 [S] COG2363 Uncharacterized small membrane protein Vch Vibrio cholerae Length = 128 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 4/112 (3%) Query: 16 VAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPRLGGAA----LRW 71 VAVG GAF AHGLKKM+S +L ++ T V YQ +HAL ++ +L+ A R Sbjct: 16 VAVGLGAFAAHGLKKMLSPYLLDVFETGVQYQFIHALALLVCGVLLLLPLHEAAHKGFRR 75 Query: 72 AGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACKQ 123 A L GIV FSGSLY LALTG + G ITPFGGV F+ W+ ++AA K Sbjct: 76 AAQFFLVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWFSYAAWKS 127 >lin0671 [S] COG2363 Uncharacterized small membrane protein Lin Listeria innocua Length = 125 Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 3 ERTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMP 62 ++T+I GA+ +AV GAFGAH LK ++ + W T V YQ+ HA+G++ V +LM Sbjct: 2 KKTIIT-GAIFAGLAVLLGAFGAHALKDVLGSYA-STWETGVQYQMFHAVGILIVGILME 59 Query: 63 RLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122 + WA +L GIV FSGSLY+L+++ +LGAITP GGV F+ W L+ + Sbjct: 60 KQASRLYAWAAILFSIGIVFFSGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSR 119 Query: 123 QP 124 + Sbjct: 120 RT 121 >CC1231 Non COG Length = 125 Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 4/122 (3%) Query: 3 ERTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMP 62 RT L A N +AV GAF AHG+ + E L T YQ++HAL + A A + Sbjct: 6 PRTWTGLAAANGLLAVAFGAFAAHGIDGWKAVEWL---KTGAQYQMIHALAVFA-AFTLH 61 Query: 63 RLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122 + G ++ L GI++FSGSLY +AL R+LGAITP GG+ F+A W L+AW Sbjct: 62 KAGAKSMGIVTALFFVGILLFSGSLYAMALGAPRILGAITPLGGLSFIAGWALMAWRGFN 121 Query: 123 QP 124 QP Sbjct: 122 QP 123 >STM2981 [S] COG2363 Uncharacterized small membrane protein Sty Salmonella typhimurium LT2 Length = 131 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 66/126 (52%) Query: 1 MKERTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL 60 M R ++ + A++ F+ V GAFGAH L K + + T + YQ H L + +A+ Sbjct: 1 MTSRFMLIVAAISGFIYVALGAFGAHVLSKTLGVVEMGWIQTGLQYQAFHTLAIFGLAVA 60 Query: 61 MPRLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAA 120 M R W+ V + G V+FSGSLY LAL+ R+ ITP GGV FL W L+ A Sbjct: 61 MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYITPVGGVSFLVGWALLLIGA 120 Query: 121 CKQPAK 126 + K Sbjct: 121 IRMKRK 126 >ygdD [S] COG2363 Uncharacterized small membrane protein Eco Escherichia coli K12 Length = 131 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 67/126 (53%) Query: 1 MKERTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL 60 M R ++ A++ F+ V GAFGAH L K + + T + YQ H L ++ +A+ Sbjct: 1 MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA 60 Query: 61 MPRLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAA 120 M R W+ V + G V+FSGSLY LAL+ R+ +TP GGV FLA W L+ A Sbjct: 61 MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA 120 Query: 121 CKQPAK 126 + K Sbjct: 121 IRLKRK 126 >ZygdD [S] COG2363 Uncharacterized small membrane protein EcZ Escherichia coli O157:H7 EDL933 Length = 131 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 67/126 (53%) Query: 1 MKERTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL 60 M R ++ A++ F+ V GAFGAH L K + + T + YQ H L ++ +A+ Sbjct: 1 MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVA 60 Query: 61 MPRLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAA 120 M R W+ V + G V+FSGSLY LAL+ R+ +TP GGV FLA W L+ A Sbjct: 61 MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGA 120 Query: 121 CKQPAK 126 + K Sbjct: 121 IRLKRK 126