BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0296.p (126 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc932_3 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C5... 78 5e-15 PA1992_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa 74 6e-14 mlr1132_2 [T] COG0784 FOG Mlo Mesorhizobium loti 72 4e-13 PA1976_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa 69 3e-12 mll5691_3 [T] COG0784 FOG Mlo Mesorhizobium loti 66 2e-11 VC0303_3 [T] COG0784 FOG Vch Vibrio cholerae 65 5e-11 PA3271_4 [T] COG0784 FOG Pae Pseudomonas aeruginosa 64 6e-11 PA1396_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa 62 4e-10 SMc02249_3 [T] COG0784 FOG Sme Sinorhizobium meliloti 62 5e-10 AGl153gl_2 [T] COG4566 Response regulator Atu Agrobacterium tume... 61 5e-10 >AGc932_3 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 126 Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAE--ALAQQHLPELVISDYRLRQHS 58 +RVL ID++ ++ E M LL WGC A S+ E L P+++I+DY L Sbjct: 1 IRVLCIDNEPKILEGMTLLLTGWGCDVLPAGSVAALEEPFLTLAAAPDVIIADYHL-DDG 59 Query: 59 NGTDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRLSG 118 +G AI +R GK + ALL+T D + +A + GI + HKPV P + ++SG Sbjct: 60 DGISAIRLIRTFYGKTIPALLVTADRSPEVRSDAEKYGISVQHKPVKPAALRAYINQISG 119 Query: 119 QARQA 123 AR A Sbjct: 120 TARAA 124 >PA1992_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 134 Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%) Query: 2 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNGT 61 R+L++D++ + SM+ LL WGC A LE A P+ ++ DY L + G Sbjct: 16 RLLVVDNETEILFSMSALLGQWGCEVLTATDLEGARKALDGRAPDAILVDYHLDHGATGC 75 Query: 62 DAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRLSGQ 119 + A+R G ++A++IT D + R A G+P+L+KP+ PG+ L L G+ Sbjct: 76 QLLGALREDYGAEIAAVMITADRSDDCRRALARLGVPLLNKPLKPGKLRAALSALLGE 133 >mlr1132_2 [T] COG0784 FOG Mlo Mesorhizobium loti Length = 128 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Query: 2 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALA--QQHLPELVISDYRLRQHSN 59 +VLL+++D V E+M LLE W C A S + A L +P+++I+D L Sbjct: 10 KVLLVENDAEVLEAMTFLLERWQCLVRAATSTDDALDLLGDTDWVPDIIIADQHLDGGDL 69 Query: 60 GTDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAP 106 GT I+ VR LG+ V AL++T D++ A + A GI ++ KP+ P Sbjct: 70 GTTTISEVRDYLGRAVPALIVTADSSEAVAKAARAGGIELMRKPLKP 116 >PA1976_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 131 Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 2/110 (1%) Query: 2 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQ-AEALAQQHL-PELVISDYRLRQHSN 59 RV ++D+D + M LLE WGCR A S E A + H +L+I DY L N Sbjct: 8 RVWVLDNDAAICAGMRTLLEAWGCRVVTALSEEDLARQVDNYHAEADLLIVDYHLDDQRN 67 Query: 60 GTDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQF 109 G DA+AA+ G P+ AL+IT + + ++ E G ++HKPV P + Sbjct: 68 GVDAVAAINARRGSPLPALMITANYSNELKQQVRELGHTLMHKPVRPMKL 117 >mll5691_3 [T] COG0784 FOG Mlo Mesorhizobium loti Length = 136 Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 L VL ID+D R+ E M LLE WGC+ E A H P++V++DY L + G Sbjct: 15 LHVLCIDNDARILEGMRLLLEGWGCKVDTVSGSRDLEN-AALHRPDIVLADYHLDGET-G 72 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRL 116 D IA +R G ++A+L+T D + AA I +++KP+ P + R+ Sbjct: 73 LDIIARLRATHGDDLAAVLVTADRSNEVRAAAAGLDIAVINKPLKPAVLRSMMARV 128 >VC0303_3 [T] COG0784 FOG Vch Vibrio cholerae Length = 118 Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQA-EALAQQHLPELVISDYRLRQHSN 59 LRVL +D++ + M LLE WGC A + + +AL Q +P++++SDYRL Sbjct: 1 LRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGRT 60 Query: 60 GTDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRLS 117 G + + R LG + ++I+ D L SG + KP+ P + L LS Sbjct: 61 GLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSLS 118 >PA3271_4 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 129 Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 2 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHL-PELVISDYRLRQHSNG 60 +VL +D++ + M LL WGC+ A S E+ L + P+L + DY L G Sbjct: 10 QVLCVDNEDSILAGMNSLLSRWGCQVWTARSREECATLLDSEMRPQLALIDYHLDDGETG 69 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQR 115 T +A +R LG+PV ++I+ D + E +G+ L KPV P L R Sbjct: 70 TQLMAWLRTRLGEPVPGVVISADARPELVAEIHAAGLDYLSKPVKPAALRALLSR 124 >PA1396_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa Length = 130 Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 LRV L++DD+ V + + LLE WGC + EA + ++++ DY L H++G Sbjct: 9 LRVCLVEDDRNVLRATSALLERWGCTVQA-----ETEADGWRTDCDILVVDYDLGPHASG 63 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRL 116 + I VRR G+ + AL+I+G ++ I +L KPV P + L+ L Sbjct: 64 VECIERVRRQRGEAIPALVISGHDIERIQASVEDTDIALLSKPVRPTELRATLRAL 119 >SMc02249_3 [T] COG0784 FOG Sme Sinorhizobium meliloti Length = 118 Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 11 RVRESMAQLLEHWGCRCHCAESLEQAEALAQQHL---PELVISDYRLRQHSNGTDAIAAV 67 ++ E MA LL WGC AESL +A L P+ +I+DY L G +AIAA+ Sbjct: 2 KILEGMALLLGGWGCSVTTAESLAGCTEMAPGRLGVRPDAIIADYHL-GDGTGVEAIAAI 60 Query: 68 RRMLGKPVSALLITGDTARARLREAAE-SGIPMLHKPVAPGQFWEQLQRL 116 R + + + AL++T D + +R AAE G+ + HKPV P L +L Sbjct: 61 RGLWQESIPALMVTADRS-PEVRGAAERDGVSLQHKPVRPAALRAWLTQL 109 >AGl153gl_2 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 339 Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 3 VLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQ--QHLPELVISDYRLRQHSNG 60 VL+I+D+ +R+ + LE G + +A A+ + Q P+++++DY NG Sbjct: 3 VLIIEDENGMRDLLKMGLEQSGYVVAATSTGAEALAIVRGLQFKPDVILADYNFPTGGNG 62 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPV 104 AI +R+ L + V AL++TGD + L A+ IP LHKPV Sbjct: 63 IAAIEDIRQALRRNVPALILTGDISSKALTTFAQHEIPYLHKPV 106