BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0279.p (255 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing prot... 179 5e-45 RSc0234 [K] COG2207 AraC-type DNA-binding domain-containing prot... 125 1e-28 PA0780 [K] COG2207 AraC-type DNA-binding domain-containing prote... 115 9e-26 PA3220 [K] COG2207 AraC-type DNA-binding domain-containing prote... 107 2e-23 VCA1074 [K] COG2207 AraC-type DNA-binding domain-containing prot... 86 1e-16 yhiX [K] COG2207 AraC-type DNA-binding domain-containing protein... 72 2e-12 ZyhiX [K] COG2207 AraC-type DNA-binding domain-containing protei... 71 3e-12 ECs4396 [K] COG2207 AraC-type DNA-binding domain-containing prot... 71 3e-12 BH2728 Non COG 69 1e-11 BH1786 [K] COG2207 AraC-type DNA-binding domain-containing prote... 66 1e-10 >AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 252 Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 137/243 (56%) Query: 10 DLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGAR 69 D +A +R+YR E RH F Q+VLP++GHL +D+ GR+ G F+ A Sbjct: 6 DSVMTVASADIRTYRQERPRERHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDAP 65 Query: 70 HATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPA 129 H A N SLV+D+ + V+ LE+ A+ PFL ++ +L+ +M + Sbjct: 66 HTQEATDINHSLVVDIDESVVSERTLEKFARTPFLDIAPDTRQLITYMRGVIGTDGRRDD 125 Query: 130 MLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFR 189 + W PLL+D+LA RLR + A V A+ PWT+ +A A+IS SRLH F Sbjct: 126 VTGLWAPLLVDSLANERADIRKRLRWLGAVVGAEPFFPWTIDMLAACASISESRLHALFI 185 Query: 190 AELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASY 249 E SP WL +RM + C LLR S+LP+A++A R G++DQ+ALT A+R G TPA+Y Sbjct: 186 EEFGLSPHRWLVGLRMDKVCTLLRESSLPIAEIALRSGFSDQTALTRALRNAVGETPAAY 245 Query: 250 RKN 252 R+N Sbjct: 246 RRN 248 >RSc0234 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 248 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 126/246 (51%), Gaps = 11/246 (4%) Query: 18 LHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGE 77 L R+Y + H HDF Q+V+P G LA+++ GR G D A + GA HA A G Sbjct: 2 LDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAGS 61 Query: 78 NRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLA-QARS--SPAMLQHW 134 N +VLD+A + L+ LA+R F L+ L ++ + A AR PA+ Q W Sbjct: 62 NAFIVLDIAAPALEAPDLDGLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQAW 121 Query: 135 VPLLLDTLA----QRTPQALSR----LRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHE 186 L L TLA R+ Q R R +E A P T +A +S RL Sbjct: 122 SSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYAQPLTAQALAAEVGLSARRLAA 181 Query: 187 WFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTP 246 FRA ++ A LA VR+ A +LL +ALP+A++A R GY DQSALT ++ G+TP Sbjct: 182 LFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGITP 241 Query: 247 ASYRKN 252 A+ R++ Sbjct: 242 AAVRRS 247 >PA0780 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 250 Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 25 DESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGENRSLVLD 84 D+S H H+ QLV+ LAG ++ G G V A H G+NR L++D Sbjct: 11 DQSHTHAHEHHQLVMSLAGRAEFEVNGCGGEVCRMRACLVPGEAGHVFAGVGDNRMLIID 70 Query: 85 LA---PATVNTLQLEQLAQRPFLP-LSVAAGKLVEFMAVSLAQARSSPAMLQHWVPLLLD 140 L P + L +L + P P L L+ + LA+ S P + + +L+ Sbjct: 71 LGEDNPTPEDPDLLARLFEAPRYPTLDADFQNLLSYAGAELARYGSDPLLTRALGGVLIR 130 Query: 141 TL-----AQRTPQALS---RLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAEL 192 L ++ P A S L R+ A + +A TVA++A+ A +SPS H F+ + Sbjct: 131 ALHLRLFGEQQPLAASGPLDLERLDAHIVRNLARRITVAELAQVACLSPSHFHAQFKDSV 190 Query: 193 DSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 +P +L +VR+ A +LLR S LPL ++A+ CG++ QSALT AMRR G+TP S RK Sbjct: 191 GLTPHQYLLKVRLDCAARLLRESRLPLVRIAEECGFSSQSALTTAMRRYLGLTPKSLRKG 250 >PA3220 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 254 Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 124/247 (50%), Gaps = 15/247 (6%) Query: 18 LHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGE 77 L LR Y + + H HD QLVL L+G L ++ GR R T A V ARHA + Sbjct: 5 LSLRHYSHDQIVHSHDHAQLVLGLSGCLDFEVEGRGSRVLRQTFAVVPAQARHACSSPSG 64 Query: 78 NRSLVLDLAPATVNTLQLEQ-------LAQRP-FLPLSVAAGKLVEFMAVSLAQARSSPA 129 +R LVLDL L L + L +RP L L+ A G+LV ++A + + P Sbjct: 65 SRCLVLDLPCDGSLLLGLGEHAEAGRRLFERPQALSLTPAQGQLVNWLA---SGPINDPV 121 Query: 130 MLQHWVPLLLDTLA-QRTP---QALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLH 185 + LLL +LA +R P Q L + A ++ AHP VA +A A +S +R H Sbjct: 122 IAHQGAGLLLASLASERQPPRQQPRLPLASLDAYLDRHAAHPLQVADLARLAGLSVARFH 181 Query: 186 EWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVT 245 F AE +P + R+ QA +LL S+L + ++A R GYA QSA T A+ R GVT Sbjct: 182 SLFLAETGQTPMDYARSRRLHQAHELLLESSLAVGEIAARVGYASQSAFTAALVREFGVT 241 Query: 246 PASYRKN 252 P R+ Sbjct: 242 PRQLRRE 248 >VCA1074 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 287 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 15/239 (6%) Query: 29 AHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAG-GENRSLVLDL-A 86 H H + Q+V+ L G ++ G G V G+ HA G++ LVL++ Sbjct: 46 CHDHSYTQIVIGLKGQAEFEVRGMGNIVGPGQGCVVTSGSDHAFGGVVGQSDILVLNMPV 105 Query: 87 PATVNTLQLEQLAQ----RPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVPLLLDTL 142 P+ + L L +L + + L +L++ M V QA +L + L Sbjct: 106 PSDDDPLLLRKLNELAVGDVYFQLDGQIQRLIQ-MLVQEMQASPDDLLLGRACNDTVVAL 164 Query: 143 AQRTPQALSRLRR--------MMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 QR AL+ + + + +E +AH +VAQ+A + +S S+ H F+ ++ Sbjct: 165 LQRHISALASVHKESRFDMEVVDRYIEQHLAHRISVAQLAGSVFLSESQFHVLFKEQMGL 224 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKNY 253 +P ++ R+ A +L+ L L QVA+ G+++QS TH RL G++P+ Y++ + Sbjct: 225 TPHQYVLNKRVDMAKKLIEQGRLNLGQVAELTGFSNQSTFTHTFSRLHGISPSQYKRRF 283 >yhiX [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 274 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 11/122 (9%) Query: 132 QHWVPLLLDTL--AQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFR 189 +H++PLLL+ L RT R+ + +AH WT+A++A +SPS L + R Sbjct: 129 EHFIPLLLNVLQPNMRT--------RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLR 180 Query: 190 AELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASY 249 E ++S L E RM +A QL+ + +VA CGY S + R G+TP Y Sbjct: 181 EE-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEY 239 Query: 250 RK 251 ++ Sbjct: 240 QE 241 >ZyhiX [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 274 Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%) Query: 133 HWVPLLLDTL--AQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 H++PLLL+ L RT R+ + +AH WT+A++A +SPS L + R Sbjct: 130 HFIPLLLNVLQPNMRT--------RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 E ++S L E RM +A QL+ + +VA CGY S + R G+TP Y+ Sbjct: 182 E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQ 240 Query: 251 K 251 + Sbjct: 241 E 241 >ECs4396 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs Escherichia coli O157:H7 Length = 274 Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%) Query: 133 HWVPLLLDTL--AQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 H++PLLL+ L RT R+ + +AH WT+A++A +SPS L + R Sbjct: 130 HFIPLLLNVLQPNMRT--------RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 E ++S L E RM +A QL+ + +VA CGY S + R G+TP Y+ Sbjct: 182 E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQ 240 Query: 251 K 251 + Sbjct: 241 E 241 >BH2728 Non COG Length = 510 Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Query: 116 FMAVSLAQ-ARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMA 174 F ++ A+ R + ++ + ++ + + S +++M+A +E + P +++Q+A Sbjct: 364 FATINAAKNVREATDCFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLSQLA 423 Query: 175 EAAAISPSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSAL 234 +PS L +FR D +L +VR+ +A + L++S +P++++ GY+D S Sbjct: 424 NYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDHSYF 483 Query: 235 THAMRRLRGVTPASYRK 251 ++ G+ P+ YR+ Sbjct: 484 CKVFKKRTGMPPSRYRR 500 >BH1786 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bha Bacillus halodurans Length = 232 Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 18/240 (7%) Query: 17 QLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREG-RADVATGAFVEPGARHATRAG 75 Q R+Y E H H + Q++ L G + + + + + G ++ P H RA Sbjct: 5 QCETRTYEREYNTHDHSYGQMLFALHGAMEIQTPVYDTFQLEANFGLYLPPHVNHRFRAV 64 Query: 76 GENRSLVLDLAPATV--NTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQH 133 N +V+D+ PA + + EQ + L G L Q SS + L+ Sbjct: 65 ARNEFIVVDI-PARFLGDAVTTEQ-----HVALDETWGALCHLFRGEAYQPASSQS-LRP 117 Query: 134 WVPLLLDTLAQRT-PQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAEL 192 V L LA++T P ++ +++ ++ P ++ +A P+ WF+ Sbjct: 118 LVDYLTSKLAKKTLPASIHYMKQHFSE-------PLSLETLAAIEHYHPAYYSSWFKGYT 170 Query: 193 DSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 SP +L ++R+ A +LL + +A+++ GY S L A ++ G+TP++YR Sbjct: 171 GMSPSEYLQKLRVKAAKRLLGETTWSVARISIEVGYTHPSGLVRAFTKVEGMTPSAYRNT 230