BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0257.p (198 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA650 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 89 8e-18 PA4831 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 87 2e-17 SMa1887 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ... 84 2e-16 mlr2120 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 77 2e-14 mlr2831 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 77 3e-14 AGl1283 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 73 3e-13 mlr1953 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 72 6e-13 PA3133 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 68 1e-11 >AGpA650 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 188 Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 21/180 (11%) Query: 1 MMVIMQSKPTRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESR 58 M I++ K +R+Q++ +R I+DVASR + G V VA++MK AG+THGGFY HF S+ Sbjct: 1 MRRILKMKVSREQMAENRRRILDVASRLFKDKGFEAVSVAEVMKAAGMTHGGFYGHFTSK 60 Query: 59 NALVSEAMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALS 118 + LV++ + HA S G+ F V YL H + GC A L+ Sbjct: 61 DDLVAQTLAHALAADSD------------GDGEFSDFVRSYLAPRHRDNPGNGCPTAGLA 108 Query: 119 SEMTRLDEAARGD-AKRLVAQLIALARSCLPPGCDPANGAIVA----STMTGALQLARTL 173 + + AA+ A+ L AQ+ + ++ P DPA+G A + M GA+ LAR + Sbjct: 109 AAIRHQTPAAKAAMAEGLRAQIARIEKAL--PAQDPADGRRTAIGSWAAMVGAVILARAV 166 >PA4831 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 186 Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 11/193 (5%) Query: 5 MQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSE 64 M+ KQ + RIV+ A+R R+ G G+ +MK GLTHGGFYAHF+S++ LV Sbjct: 1 MRYPEDHKQKTRRRIVEEAARLFRQDGVGATGLQPLMKALGLTHGGFYAHFKSKDDLVET 60 Query: 65 AMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEM-TR 123 A+RHA A + + +A E L+ YL H + GC + LS+E+ R Sbjct: 61 ALRHAA-----AQLDEITAPLAEAERPLALLIEQYLSPRHRDNPGAGCPLPTLSAELGQR 115 Query: 124 LDEAARGDAKRLVAQLIALARSCLPPGCDPANGAI-VASTMTGALQLARTLGGKQ-GREL 181 + D+ +V + +A+ + L G D A+ + +++ GALQL+R++ + + + Sbjct: 116 GTPSPTTDS--IVRKRLAMIEAAL-EGEDAGERAVLLLASLVGALQLSRSVQDEALSQRI 172 Query: 182 LALARKQLINQFD 194 L RK+L+ Q + Sbjct: 173 LEATRKKLLEQME 185 >SMa1887 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 200 Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 16/177 (9%) Query: 10 TRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSEAMR 67 +R Q +R ++DVASR R+ G +G+G+ D+MK AGLT GGFY FES++ L ++A R Sbjct: 4 SRAQAEANREAVIDVASRLFRKHGFDGIGLKDLMKGAGLTQGGFYKQFESKDDLAAQASR 63 Query: 68 HAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTR--LD 125 A + AL A A + F A+V YL +H E+ GC + AL S+ R +D Sbjct: 64 RALE---SALRRWSAAAAANPQHPFGAVVAFYLSMAHREEKMDGCPVVALGSDAARQGVD 120 Query: 126 -----EAARGDAKRLVAQLIALARSCLPPGCDPANGAIVASTMTGALQLARTLGGKQ 177 EA + ++ + I A P G + STM GA+ L+R + +Q Sbjct: 121 VKASFEAGIREYLEVLGEWIGAADGEEPDG----KAMAILSTMVGAVLLSRAVNDEQ 173 >mlr2120 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 195 Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 5 MQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSE 64 M+ RK S RI++VAS R G G+A IM +AG+T+G FY HF+S+ LV E Sbjct: 1 MRYDKGRKDASRSRIMEVASHRFRGDGIAASGLASIMSDAGMTNGAFYPHFQSKADLVRE 60 Query: 65 AMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTRL 124 +M A + T + + A + YL H + + GC AAL E+ R Sbjct: 61 SMASALE------TQSQQLQQALASGGLELAMAMYLSPEHRDHPQTGCASAALLPEIARQ 114 Query: 125 DEAARG-DAKRLVAQLIALARSCLPPGCDPANGAI-VASTMTGALQLARTLGGKQ 177 R ++L+ + LA+ P DP A+ V + + GALQLAR + G + Sbjct: 115 PPETRSLYTEKLLTLVHQLAKDLPPRTRDPEGVALGVFAALIGALQLARAVEGTE 169 >mlr2831 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 193 Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 8 KPTRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSEA 65 + R Q + +R +++VASR R G +G+G+ D+MK AGLT G FY FES+ L ++A Sbjct: 3 RVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAAQA 62 Query: 66 MRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTRLD 125 + A + + ++A A A E+ A+++ YL H + GC I AL S+ R Sbjct: 63 SKRAMESATHRWSDATA---ANPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQG 119 Query: 126 EAARGDAKRLVAQ-LIALARSCLPPGCDPANGAIVA--STMTGALQLARTL 173 + + + + + L L R + +N +A STM GA+ L+R + Sbjct: 120 QDVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTMVGAVLLSRVV 170 >AGl1283 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 199 Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 17/181 (9%) Query: 1 MMVIMQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNA 60 M V M+ + + + +R++ VASR R G +G+G+ D+MK AGLT GGFY F S++ Sbjct: 1 MEVHMRVSRAQAEENRERVITVASRLFREHGFDGIGLKDLMKGAGLTQGGFYKQFASKDD 60 Query: 61 LVSEAMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSE 120 L + A R A + ++ ++A A E A++ YL H + +GC + AL S+ Sbjct: 61 LAALASRRALESATRRWSDAAADTSDPLE----AIMAFYLSKDHRGEKAEGCPLVALGSD 116 Query: 121 MTR--------LDEAARGDAKRLVAQLIALARSCLPPGCDPANGAIVASTMTGALQLART 172 R ++ RG + ++ +L+ A S P + S M GA+ L+R Sbjct: 117 AARQSAEVRRPFEDGIRGHFE-VLDELMGHADSSGP----SEKAMAILSMMVGAVTLSRI 171 Query: 173 L 173 + Sbjct: 172 I 172 >mlr1953 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 199 Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 5 MQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSE 64 M+ + + D ++ ASR R+ G GVGVA+I KEAGLTHG YAHF S++ L + Sbjct: 1 MRVSKEKASANRDALLKAASRLFRQRGIEGVGVAEIAKEAGLTHGALYAHFSSKDELAAA 60 Query: 65 AMRHAWQDTSQALTNAMA-RRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTR 123 A + + + A T A A R + + L++ ++ D K+E GC +AA +SE+ R Sbjct: 61 AFSYGFA-RNMADTRAWAGDRNPSFQDYMGGLLSPFMRD----KLETGCPMAASASEIGR 115 Query: 124 LD---EAARGDAKRLVAQLIALARSCLPPGCDPANGAIVA-STMTGALQLARTL 173 D A+ DA + +A ++ + + P + AI A + GA+ ++R + Sbjct: 116 QDCGVSASFTDAFQEMAAMLEGSIETIIPAAEKRKLAIAAVAAEIGAMAVSRAI 169 >PA3133 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 180 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 8/183 (4%) Query: 11 RKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSEAMRHAW 70 +K + RI+ A++A+ GA V ++M AGLT GGFYAHF+S++AL+ EA Sbjct: 4 KKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLL 63 Query: 71 QDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLE-KIEQGCVIAALSSEMTRLDEAAR 129 + L + ++ E R +A YL H + +++ GC + A +E+ RL E R Sbjct: 64 GKRRE-LLGELDPGLSGKERRALA-AAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFR 121 Query: 130 GDAKRLVAQLI-ALARSCLPPGCDPANGAIVASTMTGALQLARTLGGKQGRELLALARKQ 188 R V ++ +LA S P D A +V M G L LAR LG + + + A KQ Sbjct: 122 EVLSRHVEIMVTSLAES--PEETDVALADLV--LMIGGLALARALGPGELSDRVLRAAKQ 177 Query: 189 LIN 191 +N Sbjct: 178 AVN 180