BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0245.p         (407 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1286 [GEPR] COG0477 Permeases of the major facilitator superfa...   122   2e-27
NMA0047 [GEPR] COG0477 Permeases of the major facilitator superf...    85   2e-16
SMc02603 [GEPR] COG0477 Permeases of the major facilitator super...    83   1e-15
AGc1918 [GEPR] COG0477 Permeases of the major facilitator superf...    81   6e-15

>PA1286 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 399

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 8   RKPWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQPLA 67
           R  + ++L+GA I++++LG R  FGLF++P+S D G    + AFAIAL NLVWG+AQP  
Sbjct: 3   RAAFWILLSGALILALSLGVRHGFGLFLAPMSADFGWGREVFAFAIALQNLVWGLAQPFT 62

Query: 68  GALTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPAV 127
           GAL DR+G A  V  G + YA+GL L  L+ + + L L  G+ IG+G+S TSF V+L AV
Sbjct: 63  GALADRYGAARAVLVGGLLYALGLVLMGLSQSASGLSLSAGLLIGLGLSGTSFSVILGAV 122

Query: 128 GRSVPAERRSGAMGLVSAGGSLGPADAAAGPGSAGHVG 165
           GR+VPAE+RS AMG+ SA GS G    A  PG+ G +G
Sbjct: 123 GRAVPAEQRSMAMGISSAAGSFG--QFAMLPGTLGLIG 158


>NMA0047 [GEPR] COG0477 Permeases of the major facilitator superfamily NmA
           Neisseria meningitidis Z2491
          Length = 405

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%)

Query: 9   KPWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQPLAG 68
           K WL + A A I+ + +G R T GLF+ P+     L +   +  IA+  L+WGV+QPL+G
Sbjct: 10  KFWLTITAAAFILLITIGMRMTLGLFVQPVVNTTELSIAQFSLIIAVFQLMWGVSQPLSG 69

Query: 69  ALTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPAVG 128
           AL DR G   V++ GAV       +    P    L++ +G+ +  G     F +++  V 
Sbjct: 70  ALADRFGAFRVLSGGAVLLVCACLIAPNIPTYWGLMIAVGLLLAFGTGSGGFSIIMGQVA 129

Query: 129 RSVPAERRSGAMGLVSAGGSLG 150
             VPA +R  A GLV+AGGS G
Sbjct: 130 AQVPAHKRGLASGLVNAGGSAG 151


>SMc02603 [GEPR] COG0477 Permeases of the major facilitator superfamily Sme
           Sinorhizobium meliloti
          Length = 412

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%)

Query: 10  PWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQPLAGA 69
           PWL+++AG+ I  +  G R   G F  P+  + G   T    A+A  NL WG+ QP  GA
Sbjct: 18  PWLIIVAGSIIAMLTFGPRSAMGFFQLPMLAEKGWDRTTFGLAMAFQNLCWGLGQPFFGA 77

Query: 70  LTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPAVGR 129
           + D+ G   V+A   + YA GL L A A     L +G GV +G+G++  SFG+VL A  R
Sbjct: 78  IADKFGTWRVLALSGLVYAAGLILMAFADAPIWLHIGGGVLVGLGVASGSFGIVLSAFAR 137

Query: 130 SVPAERRSGAMGLVSAGGSLG 150
           +V  E+RS A G+ +A GS G
Sbjct: 138 NVAPEQRSLAFGIGTAAGSAG 158


>AGc1918 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 414

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 79/150 (52%)

Query: 1   MRIATVNRKPWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVW 60
           M  AT    PWL++ AG+ I  M  G R   G F  P+  D G   +    A+AL NL W
Sbjct: 11  MSQATRQTMPWLIIAAGSLIAVMTFGPRSAMGFFQLPMLADTGWDRSTFGLAMALQNLFW 70

Query: 61  GVAQPLAGALTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSF 120
           G+ QP  GA+ D++G   V+    + YA GL   +   +   L  G GV +G+GI+  SF
Sbjct: 71  GLGQPFFGAIADKYGTGRVLVLSGILYAAGLVCMSFGTSPFWLHFGGGVLVGLGIAAGSF 130

Query: 121 GVVLPAVGRSVPAERRSGAMGLVSAGGSLG 150
            V+L A  R V  ++RS A G+ +A GS G
Sbjct: 131 SVILSAFARHVTPQQRSLAFGIGTAAGSAG 160