BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0212.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4883 [C] COG4117 Thiosulfate reductase cytochrome B subunit (m...   207   1e-53
RSc0619 [C] COG4117 Thiosulfate reductase cytochrome B subunit (...   177   2e-44
alr2943 [C] COG4117 Thiosulfate reductase cytochrome B subunit (...    80   2e-15
mlr0877 Non COG                                                        61   2e-09

>PA4883 [C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane
           anchoring protein) Pae Pseudomonas aeruginosa
          Length = 204

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 148/199 (74%)

Query: 6   VLHPLAVRIAHWLNAFAIACMISSGWGIYNASPIFPFKFASWMTLGGWLGGSIAWHFAAM 65
            LH   VR+ HWLNA+A+AC+I SGWGIYNASP+  F+F +W TLGGWLGGSIAWH AAM
Sbjct: 4   ALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAM 63

Query: 66  WLLVANGLFYLLYGALSGHFRRHLLPVRAGEVWRDAGQALRFRLPHQPGVYNAVQKLLYW 125
           WLL+ NGL YL YG  SGHFRR  LP+ A  VWRD   AL  RL H+PG YNAVQ+LLYW
Sbjct: 64  WLLLGNGLCYLAYGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYW 123

Query: 126 AVMLLGILVVLSGLALWKPVQLDWLADLFGGFDFARKVHFAAMAGIAAFVVVHLALVAIV 185
            V+ LG L+VLSGLA+WKPVQL  L  LFGGF  AR VHF AMAG+  FVVVHL LV +V
Sbjct: 124 LVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLV 183

Query: 186 PRTLIPMFTGGHDKKANAS 204
           PRTL+PM  G   ++   S
Sbjct: 184 PRTLLPMLIGREWRRGRRS 202


>RSc0619 [C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane
           anchoring protein) Rso Ralstonia solanacearum
          Length = 212

 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 125/191 (65%), Gaps = 1/191 (0%)

Query: 6   VLHPLAVRIAHWLNAFAIACMISSGWGIYNASPIFPFKFASWMTLGGWLGGSIAWHFAAM 65
            L P  +RI HWLNA A+  M+ SGW IYN+SP+F F+F + +TLGGWL G++ WHFAAM
Sbjct: 21  TLQPAWLRITHWLNAIAVIIMMLSGWRIYNSSPLFAFRFPNEITLGGWLAGALQWHFAAM 80

Query: 66  WLLVANGLFYLLYGALSGHFRRHLLPVRAGEVWRDAGQALRFRLPH-QPGVYNAVQKLLY 124
           WLLVANGL YL    ++G F R  +PV       D   ALR RL H     YNA QKLLY
Sbjct: 81  WLLVANGLVYLALNVVTGRFWRRFIPVSIPSALHDMVAALRGRLSHANLAEYNAAQKLLY 140

Query: 125 WAVMLLGILVVLSGLALWKPVQLDWLADLFGGFDFARKVHFAAMAGIAAFVVVHLALVAI 184
             V+ + ++ VLSGLA+WK VQ   L  L GG+D AR VHF  M+ IA F+VVH+ +  +
Sbjct: 141 LGVVAVIVITVLSGLAIWKSVQFPLLRMLMGGYDAARWVHFIGMSAIALFIVVHVVMTVL 200

Query: 185 VPRTLIPMFTG 195
           VPRTLI M  G
Sbjct: 201 VPRTLIIMLRG 211


>alr2943 [C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane
           anchoring protein) Nos Nostoc sp. PCC 7120
          Length = 167

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 12/157 (7%)

Query: 26  MISSGWGIYNASPIFP----FKFASWMTLGGWLGGSIAWHFAAMWLLVANGLFYLLYGAL 81
           M++SG  IYNA+P+F            TLGGWL G   WHFAAMWL   N L+Y  Y   
Sbjct: 1   MLTSGLQIYNANPVFGGRAGLHIPPIFTLGGWLAGGRHWHFAAMWLFSLNLLWYGFYILF 60

Query: 82  SGHFRRHLLPVRAGEVWRDAGQALRFRLPHQPGVYNAVQKLLYWAVMLLGILVVLSGLAL 141
           +  +R     V A ++     +AL+    ++  +Y A  +++Y +++ + +L +L+G+ +
Sbjct: 61  TQRWRHRF--VGANDI-----KALQKSQNNKRLIY-AWHRIIYTSIIPILLLALLTGIGM 112

Query: 142 WKPVQLDWLADLFGGFDFARKVHFAAMAGIAAFVVVH 178
           +KP Q  W+ D+FG +   R VHFA++  +  FV+VH
Sbjct: 113 YKPAQFPWIVDMFGNWQSLRIVHFASVPMVIIFVIVH 149


>mlr0877 Non COG
          Length = 293

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 10/147 (6%)

Query: 44  FASWMTLGGW--LGGSIAWHFAAMWLLVANGLFYLLYGALSGHFRRHLLPVRAGEVWR-- 99
           F SW T+  +  LG +   HF   W+L    + +L+   ++GH RR L P R  ++ R  
Sbjct: 116 FPSWATIPSYYDLGTARVVHFFFAWILTTTLIVWLVASLVNGHIRRDLAP-RLDDLKRLP 174

Query: 100 -DAGQALRFRLPHQPGVYNAVQKLLYWAVMLLGI-LVVLSGLALWKPVQ--LDWLADLFG 155
            D     R +  H    YN +QK+ Y  V+ + + L++++GLA+   +   L +L ++ G
Sbjct: 175 RDIVDHARLKF-HHTREYNTLQKMAYGGVLFVLLPLMIITGLAMSPSMNSVLPFLNEVLG 233

Query: 156 GFDFARKVHFAAMAGIAAFVVVHLALV 182
           G   AR +HF  M  +  F ++H+ ++
Sbjct: 234 GRQTARTIHFTVMLLLVGFFIIHILMI 260