BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0203.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4876 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...   103   1e-22
PA1603 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...    86   2e-17
ECs3594 [K] COG1846 Transcriptional regulators Ecs Escherichia c...    72   4e-13
Z4048 [K] COG1846 Transcriptional regulators EcZ Escherichia col...    72   5e-13
STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella ty...    68   6e-12

>mll4876 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 153

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 82/134 (61%), Gaps = 2/134 (1%)

Query: 10  YHFSDQIGHLLRRAYQRHAAIFQQHIPDSQLTAAQFVTLCAIRDLETCSLSDIVKVTAID 69
           Y   +Q+G +LR+A+QRH +IF  HI D  LT  QF  L  +RD+   S + +  + A+D
Sbjct: 21  YLLQEQVGFILRKAHQRHVSIFAAHIGD--LTPPQFAALAKLRDVGETSQNQLGTLIAMD 78

Query: 70  QATIRGIVERLKARGLIELSHDEADRRKVLVSLSKSAATLVADTVPFAAQISEATYGNLN 129
            AT++G+++RLKARGL+ELS  E D+R++LV+L+      +   +P A +I+  T   L+
Sbjct: 79  AATVKGVIDRLKARGLVELSKHEVDKRRLLVNLTAEGRDAIERLIPLAREITRETLAPLS 138

Query: 130 PAERVALVFLLRKM 143
             E    + LL K+
Sbjct: 139 AKEIATFMKLLAKL 152


>PA1603 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 140

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 10  YHFSDQIGHLLRRAYQRHAAIFQQHIPDSQLTAAQFVTLCAIRDLETCSLSDIVKVTAID 69
           Y   DQIG +LR+A QR+AA+F   I +  LT  Q+  L  + +   C  + + ++TA+D
Sbjct: 7   YRLDDQIGFILRQANQRYAALFANGIGNG-LTPTQWAALVRLGETGPCPQNQLGRLTAMD 65

Query: 70  QATIRGIVERLKARGLIELSHDEADRRKVLVSLSKSAATLVADTVPFAAQISEATYGNLN 129
            ATI+G+VERL  RGLI+ S D  D R++LVSLS +    +   +  A +I+      L+
Sbjct: 66  AATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLS 125

Query: 130 PAERVALVFLLRKMI 144
             E+  L  LL ++I
Sbjct: 126 LQEQETLRGLLARLI 140


>ECs3594 [K] COG1846 Transcriptional regulators Ecs Escherichia coli O157:H7
          Length = 135

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 18  HLLRRAYQRHAAIFQQHIPDSQLTAAQFVTLCAIRDLETCSLSDIVKVTAIDQATIRGIV 77
           H LR+ +Q+H A +Q  +PD  LT  Q+  + AI D        +++     +AT+  ++
Sbjct: 9   HQLRQLFQQHTARWQHELPD--LTKPQYAVMRAIADKPGIEQVALIEAAVSTKATLAEML 66

Query: 78  ERLKARGLIELSHDEADRRKVLVSLSKSAATLVADTVPFAAQISEATYGNLNPAERVALV 137
            R++ RGL+   HD AD+R+  V L+     ++A  +P    + E   G L+  E+   V
Sbjct: 67  ARMENRGLVRREHDAADKRRRFVWLTAEGEKILAAAIPIGDSVDEEFLGRLSAEEQELFV 126

Query: 138 FLLRKMI 144
            L+RKM+
Sbjct: 127 QLVRKMM 133


>Z4048 [K] COG1846 Transcriptional regulators EcZ Escherichia coli O157:H7
           EDL933
          Length = 146

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 18  HLLRRAYQRHAAIFQQHIPDSQLTAAQFVTLCAIRDLETCSLSDIVKVTAIDQATIRGIV 77
           H LR+ +Q+H A +Q  +PD  LT  Q+  + AI D        +++     +AT+  ++
Sbjct: 20  HQLRQLFQQHTARWQHELPD--LTKPQYAVMRAIADKPGIEQVALIEAAVSTKATLAEML 77

Query: 78  ERLKARGLIELSHDEADRRKVLVSLSKSAATLVADTVPFAAQISEATYGNLNPAERVALV 137
            R++ RGL+   HD AD+R+  V L+     ++A  +P    + E   G L+  E+   V
Sbjct: 78  ARMENRGLVRREHDAADKRRRFVWLTAEGEKILAAAIPIGDSVDEEFLGRLSAEEQELFV 137

Query: 138 FLLRKMI 144
            L+RKM+
Sbjct: 138 QLVRKMM 144


>STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella typhimurium
           LT2
          Length = 134

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 18  HLLRRAYQRHAAIFQQHIPDSQLTAAQFVTLCAIRDLETCSLSDIVKVTAIDQATIRGIV 77
           HLLR+ +Q+H A +Q  +P+  LT  Q+  +  I +       D+ +     +AT+  ++
Sbjct: 9   HLLRQLFQQHTARWQHELPE--LTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEML 66

Query: 78  ERLKARGLIELSHDEADRRKVLVSLSKSAATLVADTVPFAAQISEATYGNLNPAERVALV 137
            R++ RGL++  +D  D+R+  V L+    TL+   +P   ++ +   G L+  ER    
Sbjct: 67  SRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLTAAIPLGDRVDDEFLGRLSAEEREQFT 126

Query: 138 FLLRKMI 144
            L+RKM+
Sbjct: 127 QLVRKMM 133