BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0178.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport... 303 2e-82 AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport... 283 2e-76 DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport... 280 2e-75 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 233 3e-61 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 233 3e-61 PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport... 230 2e-60 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 226 3e-59 Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport... 220 3e-57 STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 218 8e-57 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 217 2e-56 >RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 247 Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/242 (65%), Positives = 189/242 (78%), Gaps = 4/242 (1%) Query: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLP----SRGA 60 +LEV DL YGKVE L G L V G+IVTVIGPNGAGK+T+L AIMG LP + G Sbjct: 4 ILEVTDLHVRYGKVEALHGASLKVGAGQIVTVIGPNGAGKSTMLGAIMGALPISGSANGV 63 Query: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 +++ G VE+ VA GM LVPEKRELFA M++EDNL+LGA++R R G+R++ ++ Sbjct: 64 VSYLGHNLAGLPVEKRVARGMCLVPEKRELFATMSVEDNLVLGAYRRKRAGERNYLDQMD 123 Query: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 VY LFPRL+ERR Q+AGTLSGGERQMLAVGRALMAKP+LLMLDEPSLGLAPLIV+EIF Sbjct: 124 VVYQLFPRLKERRRQEAGTLSGGERQMLAVGRALMAKPQLLMLDEPSLGLAPLIVKEIFH 183 Query: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 II+ LR GV+ LL+EQNARAALQVADYGYVLE G + + GPA +LA + RVIE YLGL+ Sbjct: 184 IISNLRSTGVATLLIEQNARAALQVADYGYVLETGDMTLEGPARELAVNPRVIETYLGLA 243 Query: 241 GK 242 K Sbjct: 244 KK 245 >AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 240 Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/244 (62%), Positives = 188/244 (77%), Gaps = 7/244 (2%) Query: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 M +L++RD+ AYG+ EV+ GI L++ G IVTVIG NGAGKTTLL+AIMGV+PSRG Sbjct: 1 MRGNLLDIRDIHVAYGRAEVVHGISLAMAAGSIVTVIGANGAGKTTLLNAIMGVIPSRGT 60 Query: 61 MAFDGAIRHSPE-VEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATL 119 + +DGA P+ +E VAAG+ LVPEKRELF M +EDN+ LG F R R ++ T Sbjct: 61 ILYDGA--PVPDTIEGRVAAGLCLVPEKRELFGSMTVEDNIELGGFLRSR---QERNETR 115 Query: 120 EEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIF 179 EEV+ LFPRLRER Q AGTLSGGERQMLA+ RALM++PRLL+LDEPSLGLAPLIV EI Sbjct: 116 EEVHALFPRLRERSKQLAGTLSGGERQMLALARALMSRPRLLLLDEPSLGLAPLIVAEIL 175 Query: 180 RIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGL 239 RI+AELRR GVSILLVEQNARAAL++AD Y++E G +R GPA++LA D ++ +YLG Sbjct: 176 RIVAELRRTGVSILLVEQNARAALEIADEAYLVELGEVRRSGPAAELAVDPALMASYLG- 234 Query: 240 SGKH 243 G+H Sbjct: 235 PGEH 238 >DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 238 Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 188/235 (80%), Gaps = 6/235 (2%) Query: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGAMAFD 64 +L+V DL AYG+VE + G++LSVE G+IV+VIG NGAGK+TLL+A++G LPSRG + + Sbjct: 8 LLQVDDLHVAYGRVEAVTGVNLSVEAGQIVSVIGANGAGKSTLLAALIGALPSRGVIRYA 67 Query: 65 G-AIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEEVY 123 G +R P +E+ VAAGMTLVPE+RELF M +EDNL LGA+ + R G + + L +V+ Sbjct: 68 GRDVRQMP-LEDRVAAGMTLVPERRELFGSMTVEDNLQLGAYTQ-RAGMQ---SGLADVF 122 Query: 124 TLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 FPRL ERR Q AGTLSGGE+QMLA+GRALMA+P+LL+LDEPSLGLAPLIVR+I I+A Sbjct: 123 RRFPRLLERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSLGLAPLIVRDILHIVA 182 Query: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLG 238 ELR GV++LLVEQNARAAL ++DYGYVLE G +++ GPA++LA D V+ +YLG Sbjct: 183 ELRDSGVTVLLVEQNARAALAISDYGYVLEGGHVKLEGPAARLADDPAVVASYLG 237 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 7/243 (2%) Query: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRG 59 M + VLEV+ L YG + + GIDL V +G+IVT+IG NGAGKTT LSAI G++ +G Sbjct: 1 MSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 60 Query: 60 AMAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRY-RTG-QRDHAA 117 + F+G + + G+ LVPE R +F E+ + +NLM+GA+ R + G +RD Sbjct: 61 KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD--- 117 Query: 118 TLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVRE 177 LE +++LFPRL+ER Q GTLSGGE+QMLA+GRALM++P+LLM+DEPSLGLAP++V E Sbjct: 118 -LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 176 Query: 178 IFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYL 237 +F +I ++ + G +ILLVEQNA AL+VA YGYVLE G I + G AS+L + V +AYL Sbjct: 177 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYL 236 Query: 238 GLS 240 G++ Sbjct: 237 GVA 239 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 170/238 (71%), Gaps = 7/238 (2%) Query: 4 KVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMA 62 K+LE+++L YG ++ L I+L++++G++VT+IG NGAGK+T L AI ++ P G + Sbjct: 31 KILEIQELDVNYGGIQALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIVTPKNGQII 90 Query: 63 FDG--AIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 + G R P E+V G+ PE R + A+ + DNL+LGA+ R+ Q + A ++ Sbjct: 91 YSGRNITRRLPH--EVVKFGIAHCPEGRRVLAKQTVLDNLLLGAY--IRSNQTEIKADIK 146 Query: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 + + LFPRL +R++Q AGTLSGGE+QMLA+ RALM++P+LL+LDEPSLGLAP IVREIF Sbjct: 147 QQFELFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVREIFS 206 Query: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLG 238 II LR GV+ILLVEQNA ALQ+AD GYVLE G+I + G AS L +D RV +AYLG Sbjct: 207 IIENLRATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDERVKKAYLG 264 >PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pya Pyrobaculum aerophilum Length = 234 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 169/236 (71%), Gaps = 6/236 (2%) Query: 6 LEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAFD 64 L + LS+ YGK++VL G+ V IV+++GPNGAGKTT L +IMGV+ P G + Sbjct: 3 LRITQLSSGYGKLQVLFGLTFEVGNNSIVSLLGPNGAGKTTTLLSIMGVVKPWGGKVELG 62 Query: 65 GAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAF-QRYRTGQRDHAATLEEVY 123 G S + V G++LVPE R LF EM +E+NL++GA+ +R R RD +LE VY Sbjct: 63 GVDVTSAPPYKKVELGLSLVPEGRRLFPEMTVEENLLMGAYTKRAREKARD---SLEFVY 119 Query: 124 TLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 +LFPRL+ERR Q+AGT+SGGE+QMLA+ RALMA+PR+L++DEPS GLAP +V ++F+ I+ Sbjct: 120 SLFPRLKERRRQKAGTMSGGEQQMLAIARALMARPRVLLIDEPSAGLAPKVVADLFQTIS 179 Query: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGL 239 +LR +S+LLVEQN AL+++DY YVLENG I + G S+LA ++ V AYLG+ Sbjct: 180 QLRSE-MSVLLVEQNVAVALEISDYAYVLENGRIVLQGTPSELAENQHVKRAYLGV 234 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 163/239 (68%), Gaps = 10/239 (4%) Query: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAF 63 +LEV+DL Y ++ L GI L + +G++V++IG NGAGKTT L I G++ P G++ F Sbjct: 3 MLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSIIF 62 Query: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEE-- 121 +G + + G+ VPE R +F+++ ++DNL LG F +D A EE Sbjct: 63 EGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTV-----KDSAEKKEEDR 117 Query: 122 --VYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIF 179 Y +FPR+ ER++Q AGTLSGGE+QMLA+GRALM++P+LL+LDEPS+GL+PL V+EIF Sbjct: 118 ANFYKVFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIF 177 Query: 180 RIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLG 238 +I +L+ +G +ILLVEQNA+ AL ++D YV+E G I + G A L ++ RV +AYLG Sbjct: 178 EVIKQLKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLG 236 >Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Cje Campylobacter jejuni Length = 231 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/235 (48%), Positives = 154/235 (65%), Gaps = 4/235 (1%) Query: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGAMAFD 64 +L V+DL YG +E + GID VE G IV++IG NGAGKT+ L+A++ + G + F Sbjct: 1 MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTLNALLNSVKRTGEVNFL 60 Query: 65 GAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEEVYT 124 G +V G+ LVPE R +F +++E+NL +GAF ++ E++Y Sbjct: 61 GYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFNN----AENYEHLREQMYK 116 Query: 125 LFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIAE 184 LFPRL ++ AGTLSGGE QMLA+ RALM++P+LLMLDEPSLGLAP IV E+F II Sbjct: 117 LFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSLGLAPKIVGEVFDIIVR 176 Query: 185 LRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGL 239 L+ G++ILLVEQNA +AL+++DY YVLENG I M A L D + + YLGL Sbjct: 177 LKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNLIGDDEIRKKYLGL 231 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 218 bits (556), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 162/241 (67%), Gaps = 8/241 (3%) Query: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMG-VLPSRG 59 M +L +SA YGK++ L + L + QG+IVT+IG NGAGKTTLL + G S G Sbjct: 1 MEKTMLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSG 60 Query: 60 AMAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAF--QRYRTGQRDHAA 117 + FDG + +++ + +VPE R +F+ M +E+NL +G F +R R +R Sbjct: 61 RVVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDRFQER---- 116 Query: 118 TLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVRE 177 ++ VY LFPRL ERR Q+AGT+SGGE+QMLA+GRALM++PRLL+LDEPSLGLAP+I+++ Sbjct: 117 -IKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 Query: 178 IFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYL 237 IF I +LR +G++I LVEQNA AL++AD GYVLENG + + L + V AYL Sbjct: 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYL 235 Query: 238 G 238 G Sbjct: 236 G 236 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 166/235 (70%), Gaps = 3/235 (1%) Query: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAF 63 +L+V +LS YG ++ + + V +G++V++IG NGAGKTT+L + G++ PS G + F Sbjct: 3 MLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62 Query: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEEVY 123 G +++VA+G++ VPE R +F + + +NL +GAF + + ++ A L++V+ Sbjct: 63 LGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAF--LKKNREENQANLKKVF 120 Query: 124 TLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 + FPRL ER++Q A TLSGGE+QMLA+GRALM+ P+LL+LDEPS+GLAP+ ++EIF II Sbjct: 121 SRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQ 180 Query: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLG 238 +++++G ++LL+EQNA AL ++D GYVLE G I + G +LA V +AYLG Sbjct: 181 DIQKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLG 235