BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0175.p (201 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 158 6e-39 VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 150 2e-36 mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 100 2e-21 BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella mel... 94 2e-19 SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 93 5e-19 RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 83 4e-16 AGl784 [K] COG1309 Transcriptional regulator Atu Agrobacterium t... 82 6e-16 PA3721 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 82 8e-16 mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 77 2e-14 PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 73 5e-13 >RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 207 Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 122/198 (61%), Gaps = 1/198 (0%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MR KT E+R +I+ AA VF E GF+ ASM+ I+AR G SK TLY+YF SKEE+F + Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 A ++ A A L K +G + TL VFGE ++ + + STL R+ + E RS++GR Sbjct: 61 GTAADEIREAFAQL-KSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDRSNLGRA 119 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F+E GPK+G LA FL M+AG LKQ D +A L AL + E V+ +LG+ IS Sbjct: 120 FYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDISP 179 Query: 181 PRMKRMVGRAVETFLAAY 198 R+ V RAV+ F+AAY Sbjct: 180 GRIAEGVARAVDVFMAAY 197 >VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 7/202 (3%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRVK+ E+R AIL A + F ++GFE SM+ I+ +GGSK TLY+YF SKEE+F AV Sbjct: 1 MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 A +Q+ + +L+ + +L+ L FG ++ + + + +RM + E+ RS IGR Sbjct: 61 SSATEQIALSFLSLDHNR-ELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRH 119 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F+E+GPK G RL+ +++ Q++ G LK+ DP +A + ALL + +P LG AI + Sbjct: 120 FYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLG---AIEK 176 Query: 181 P---RMKRMVGRAVETFLAAYA 199 P +K RAVE FL YA Sbjct: 177 PTSSELKATTQRAVEAFLCLYA 198 >mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 244 Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 3/193 (1%) Query: 8 RRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQM 67 +R I+ A VF+E+GFE ASM I+ G SKGT+Y YF +KEELF A+ E+ Sbjct: 33 KRSQIIDGARRVFIEKGFEAASMNDITREAGVSKGTIYVYFANKEELFEALIEEERGTIF 92 Query: 68 EPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIGRRFHESGP 126 + L++ DL++TL FG+ + +Q R ++ S R D+G RF+E GP Sbjct: 93 KNMYDMLDR-ADDLRQTLVKFGKVLSMKITSARVIQAQRTVIGASDRIPDMGARFYERGP 151 Query: 127 KMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLES-AISRPRMKR 185 K G +++ FL+ ++ G LK D LA Q L + + + A S+ + Sbjct: 152 KRGHDKVVKFLNAAIERGLLKIDDVDLAAYQFTELCLAGLFRQCIFAYRTKAPSQEEIDH 211 Query: 186 MVGRAVETFLAAY 198 +V V+ FL Y Sbjct: 212 IVRSGVDMFLKNY 224 >BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella melitensis Length = 247 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 3/196 (1%) Query: 8 RRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQM 67 +R IL A VFL GF+ ASM I+ G SKGT+Y YF SKE+LFVA+ + Sbjct: 53 KRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVALCEHYRQTLF 112 Query: 68 EPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRS-DIGRRFHESGP 126 + LEK + Q+ + FG + + ++ R++V S R ++ RF+E GP Sbjct: 113 SSFIGQLEKGFSNRQELID-FGVALTTLITSSIAIRAQRIVVGVSERKPELAARFYERGP 171 Query: 127 KMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLG-LESAISRPRMKR 185 K +A L + AG L+Q D QL L +P + G L A S ++ Sbjct: 172 KRSHAIMAQSLQAMIDAGVLEQHDVTRTAYQLSDLFFAGLYRPRLFGALAEAPSEQAIRD 231 Query: 186 MVGRAVETFLAAYAPR 201 V AV+ F AY + Sbjct: 232 NVESAVDFFFRAYGKK 247 >SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 236 Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 2/192 (1%) Query: 8 RRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQM 67 +R+ IL A VF+ F+ ASM I+ G SKGTLY YF++KE+LF A+ + + Sbjct: 39 KRERILDGAKRVFMRSSFDAASMNDITREAGVSKGTLYVYFENKEDLFTALIARERNIIV 98 Query: 68 EPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIGRRFHESGP 126 +L + +++ L FG K V+ + + T++ R ++ R + +RF + P Sbjct: 99 NSVKQSLNGNE-PIEEALHAFGVKLVTSITSDYTIRAMRTVLGVIDRMPRLAQRFFTATP 157 Query: 127 KMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISRPRMKRM 186 + G L A+L +Q+ AG L D +A Q L K + G+ A+S +++ Sbjct: 158 ENGYTVLKAYLDQQVSAGMLSIEDTEIAAKQFIDLAMAGMFKGRLFGMCDAVSAESIEKN 217 Query: 187 VGRAVETFLAAY 198 V A+ FLAAY Sbjct: 218 VRSAIRVFLAAY 229 >RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 5/204 (2%) Query: 2 RVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHE 61 R + ++ ++L AA VFL GF A+ I R SK T+Y+ F +KE +F AV Sbjct: 6 RTEQNDKETSVLKAATAVFLAHGFSAATTDMIQRRASVSKATMYACFPNKEAMFAAVIER 65 Query: 62 QAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIGRR 120 + E + A++ GD+ +TL G + F+ + L +R++VAE+ R D+ RR Sbjct: 66 ECAVMAE-TIRAIQTAPGDIARTLTDIGLSYLRFVVAPTALALYRVVVAEAPRFPDLARR 124 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLK-QADPMLATLQL-CALLDCETVKPMMLGLESAI 178 F+ +GPK+ +AA L Q G + QA + A L +L+ E + ++ Sbjct: 125 FYLAGPKVVTSMVAARLKEAAQDGEINIQAVGVEAAATLFISLVRTEGQLESLTHPDAQP 184 Query: 179 SRPRMKRMVGRAVETFLAAY-APR 201 S ++ V AV TF+AA+ PR Sbjct: 185 SAAQLDHWVQLAVTTFMAAFGVPR 208 >AGl784 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 228 Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 3/193 (1%) Query: 8 RRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQM 67 +RD ILA A VF +GF+ ASM I+ G SKGT+Y YF +KE+LF A+ + +++ Sbjct: 32 KRDQILAGAWRVFKLKGFDAASMNDITREAGVSKGTIYVYFSNKEDLFAALV-DHHRQEF 90 Query: 68 EPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIGRRFHESGP 126 ++ + T +++K L+ FG+ + + + R ++ R + +RF + P Sbjct: 91 ATSMRNILAGTEEVRKGLEQFGKAFANKMICSDMIPAMRSVIGVIDRMPKLAQRFFIAAP 150 Query: 127 KMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLG-LESAISRPRMKR 185 L F+ + G LK D LA Q L K + G ++ + + R Sbjct: 151 NNVRTVLQDFIEHHIALGHLKVDDVELAARQYIELSTGTFFKLRLFGEIDGPVPEEELDR 210 Query: 186 MVGRAVETFLAAY 198 ++ A++ F+AAY Sbjct: 211 VIASAIKVFMAAY 223 >PA3721 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 213 Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 7 ERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQ 66 +RR A+L AA + FLE GFEG ++ + R GGS+GTLYS F KE LF AV + Sbjct: 14 QRRRAMLDAATQAFLEHGFEGTTLDMVIERAGGSRGTLYSSFGGKEGLFAAVIAHMIGEI 73 Query: 67 MEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIGRRFHESG 125 + + A + L TL+ FG + ++ L +R++VAES R IG+ F+E G Sbjct: 74 FDDS-ADQPRPAATLSATLEHFGRRFLTSLLDPRCQSLYRLVVAESPRFPAIGKSFYEQG 132 Query: 126 PKMGM----ERLAA 135 P+ ERLAA Sbjct: 133 PQQSYLLLSERLAA 146 >mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 210 Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 5/200 (2%) Query: 3 VKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELF---VAVT 59 ++A + I+ AA F+ +G++G SM I+ + G SK T+Y +F KE LF V T Sbjct: 7 TRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLST 66 Query: 60 HEQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGR-SDIG 118 Q +E ++ L + ++ LQ + ++ L E L+ R+I+A + R +G Sbjct: 67 ASQVNDIIE-SVTTLLSEAIFMEGGLQQLARRLIAVLMDEELLKLRRLIIANADRMPQLG 125 Query: 119 RRFHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAI 178 R ++E G + + A+ + G ++ DP LA L +L + M + Sbjct: 126 RAWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLAASHLFGMLLWIPMNEAMFTGSNRR 185 Query: 179 SRPRMKRMVGRAVETFLAAY 198 S+ ++R +VE FLA Y Sbjct: 186 SKAELERHADASVEAFLAVY 205 >PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 212 Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 4/200 (2%) Query: 2 RVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHE 61 R K +R+AIL AA +FL G++G+SM I++ G SK T+YS+F KE LF Sbjct: 12 RPKDPAKREAILEAAKRLFLCNGYDGSSMEAIASEAGVSKLTVYSHFTDKETLFSEAVKA 71 Query: 62 QAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRS-DIGRR 120 + +Q+ PAL + L+K L + + R++ A++G++ + Sbjct: 72 KCAEQL-PALYFQLAEGAPLEKVLLNIARGFHRLINSHEAIALTRLMAAQAGQNPKLSEL 130 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLD-CETVKPMMLGLESAIS 179 F E+GPK ++ + L + ++G+L D A L+ C + +++G + Sbjct: 131 FFEAGPKQVIDEMERLLEQARRSGKLAFPDARHAAEHFFMLVKGCANYR-LLIGCAEPLD 189 Query: 180 RPRMKRMVGRAVETFLAAYA 199 +R V V FL A+A Sbjct: 190 EAEGERHVEEVVALFLRAFA 209