BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0162.p (185 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2152 [K] COG0782 Transcription elongation factor Rso Ralstoni... 256 1e-68 NMB0689 [K] COG0782 Transcription elongation factor Nme Neisseri... 214 1e-55 NMA0891 [K] COG0782 Transcription elongation factor NmA Neisseri... 213 1e-55 YPO0135 [K] COG0782 Transcription elongation factor Ype Yersinia... 145 4e-35 greBm [K] COG0782 Transcription elongation factor Eco Escherichi... 143 2e-34 ZgreB [K] COG0782 Transcription elongation factor EcZ Escherichi... 142 3e-34 ECs4248 [K] COG0782 Transcription elongation factor Ecs Escheric... 142 3e-34 HI0569 [K] COG0782 Transcription elongation factor Hin Haemophil... 140 2e-33 PM1450 [K] COG0782 Transcription elongation factor Pmu Pasteurel... 140 2e-33 STM3503 [K] COG0782 Transcription elongation factor Sty Salmonel... 135 6e-32 >RSc2152 [K] COG0782 Transcription elongation factor Rso Ralstonia solanacearum Length = 187 Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/186 (67%), Positives = 153/186 (82%), Gaps = 7/186 (3%) Query: 1 MNKAFVKESDGDDDDEDIALPS----IPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVR 56 MNKAFV+E GD++D+ LP +PAGSKNY+TP G+ R++ EL+HLID ERPEVV Sbjct: 1 MNKAFVREDAGDEEDD---LPEGAAPLPAGSKNYITPAGYARLRTELMHLIDVERPEVVG 57 Query: 57 VVSWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGAT 116 +VSWAASNGDRSENGDYLYGKKRLREIDRRIRFLT+R++ AEVVD S+ +DQIFFGAT Sbjct: 58 IVSWAASNGDRSENGDYLYGKKRLREIDRRIRFLTRRIERAEVVDASLQGDNDQIFFGAT 117 Query: 117 VTYENQRGEAHTVTIVGIDELDPLKGRISWISPVARALTKAREGDEVVLQTPAGLEQLTI 176 VTY NQ G+ T+TIVG+DE+D KG++SWISP+ARAL KAREGD V L+TP G+E + I Sbjct: 118 VTYANQDGDETTITIVGMDEVDLDKGQVSWISPIARALIKAREGDTVALRTPTGVEPIDI 177 Query: 177 LEVSYP 182 L V+YP Sbjct: 178 LAVTYP 183 >NMB0689 [K] COG0782 Transcription elongation factor Nme Neisseria meningitidis MC58 Length = 163 Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/155 (64%), Positives = 122/155 (78%) Query: 27 SKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRR 86 +KNY+TP G Q +KDEL L+++ERPE+V++V+WAA NGDRSENGDYLYGK+R+REIDRR Sbjct: 5 TKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRR 64 Query: 87 IRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISW 146 IRFLTKRL+ A VVDP + +DQ+FFGATV G TV IVGIDE+D + +ISW Sbjct: 65 IRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRDDGREQTVKIVGIDEIDTAQNKISW 124 Query: 147 ISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 ISP+AR L KAREGDEVVL TP G E++ IL V Y Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEY 159 >NMA0891 [K] COG0782 Transcription elongation factor NmA Neisseria meningitidis Z2491 Length = 163 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/155 (64%), Positives = 122/155 (78%) Query: 27 SKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRR 86 +KNY+TP G Q +KDEL L+++ERPE+V++V+WAA NGDRSENGDYLYGK+R+REIDRR Sbjct: 5 TKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRR 64 Query: 87 IRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISW 146 IRFLTKRL+ A VVDP + +DQ+FFGATV G TV IVGIDE+D + +ISW Sbjct: 65 IRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 147 ISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 ISP+AR L KAREGDEVVL TP G E++ IL V Y Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEY 159 >YPO0135 [K] COG0782 Transcription elongation factor Ype Yersinia pestis Length = 171 Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 26 GSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDR 85 NY+T +G Q + EL +L EERP V + VS AA+ GDRSEN +Y+YGKKRLREIDR Sbjct: 2 AKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDR 61 Query: 86 RIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRIS 145 R+RFL KRL+ ++VDP ++FFGA V EN++ E +VG DE DP K IS Sbjct: 62 RVRFLAKRLEVLKIVDPDPRQ-EGKVFFGAWVRVENEQEEQRIFRLVGPDEFDPAKKWIS 120 Query: 146 WISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 SPVARAL + DEV +QTP G ILE+ Y Sbjct: 121 IDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >greBm [K] COG0782 Transcription elongation factor Eco Escherichia coli K12 Length = 158 Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 +T +G++++K EL +L EERPEV + V+WAAS GDRSEN DY Y KKRLREIDRR+R+L Sbjct: 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWISPV 150 TK L+N ++VD S ++FFGA V EN G H IVG DE+ K IS SP+ Sbjct: 66 TKCLENLKIVDYSPQQ-EGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPM 124 Query: 151 ARALTKAREGDEVVLQTPAGLEQLTILEVSYPAP 184 ARAL K GD V+ TPAG + + Y P Sbjct: 125 ARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP 158 >ZgreB [K] COG0782 Transcription elongation factor EcZ Escherichia coli O157:H7 EDL933 Length = 170 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 +T +G++++K EL +L EERPEV + V+WAAS GDRSEN DY Y KKRLREIDRR+R+L Sbjct: 18 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 77 Query: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWISPV 150 TK ++N ++VD S ++FFGA V EN G H IVG DE+ K IS SP+ Sbjct: 78 TKCMENLKIVDYSPQQ-EGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPM 136 Query: 151 ARALTKAREGDEVVLQTPAGLEQLTILEVSYPAP 184 ARAL K GD V+ TPAG + + Y P Sbjct: 137 ARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP 170 >ECs4248 [K] COG0782 Transcription elongation factor Ecs Escherichia coli O157:H7 Length = 170 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 +T +G++++K EL +L EERPEV + V+WAAS GDRSEN DY Y KKRLREIDRR+R+L Sbjct: 18 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 77 Query: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWISPV 150 TK ++N ++VD S ++FFGA V EN G H IVG DE+ K IS SP+ Sbjct: 78 TKCMENLKIVDYSPQQ-EGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPM 136 Query: 151 ARALTKAREGDEVVLQTPAGLEQLTILEVSYPAP 184 ARAL K GD V+ TPAG + + Y P Sbjct: 137 ARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP 170 >HI0569 [K] COG0782 Transcription elongation factor Hin Haemophilus influenzae Length = 158 Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/153 (50%), Positives = 99/153 (64%), Gaps = 1/153 (0%) Query: 29 NYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIR 88 NY+T QG + EL L EERP+V + VS AA+ GDRSEN +Y+YGK+RLREIDRR+R Sbjct: 5 NYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVR 64 Query: 89 FLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWIS 148 FLTKRL+ ++VD + ++FFGA V EN+ GE IVG DE P K IS S Sbjct: 65 FLTKRLEVLQIVDYNPKQ-EGKVFFGAWVELENEEGETKQYRIVGCDEFAPAKNWISIDS 123 Query: 149 PVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 PVARAL DEV ++TP+G L + ++ Y Sbjct: 124 PVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >PM1450 [K] COG0782 Transcription elongation factor Pmu Pasteurella multocida Length = 158 Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 29 NYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIR 88 NY+T G + EL L +ERP+V + VS AA+ GDRSEN +Y+YGK+RLREIDRR+R Sbjct: 5 NYITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVR 64 Query: 89 FLTKRLDNAEVVDPSVHHGSDQ--IFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISW 146 FLTKRL+ ++VD +H + +FFGA V EN+ GE IVG DE DP K IS Sbjct: 65 FLTKRLEVLQIVD---YHPKQEGKVFFGAWVALENEAGEEKHYRIVGCDEFDPAKNWISI 121 Query: 147 ISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 SPVARAL DE+ ++TP+GL L I ++ Y Sbjct: 122 DSPVARALIGKSIDDEIKVETPSGLVILYINQIWY 156 >STM3503 [K] COG0782 Transcription elongation factor Sty Salmonella typhimurium LT2 Length = 157 Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 96/151 (63%), Gaps = 1/151 (0%) Query: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 +T +G++ +K EL +L EERPEV + V+WAAS GDRSEN DY Y KKRLREIDRR+R+L Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWISPV 150 TK ++N ++VD S ++FFGA V EN G+ IVG DE+ K IS SP+ Sbjct: 66 TKCMENLKIVDYSPQQ-EGKVFFGAWVEIENDDGDRLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 151 ARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 ARAL K GD V+ TP G + + Y Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEY 155