BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0154.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum 353 3e-97 PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa 335 6e-92 XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c 317 1e-86 HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae 312 5e-85 PM1876 [J] COG0689 RNase PH Pmu Pasteurella multocida 306 2e-83 Zrph [J] COG0689 RNase PH EcZ Escherichia coli O157:H7 EDL933 302 4e-82 ECs4518 [J] COG0689 RNase PH Ecs Escherichia coli O157:H7 302 4e-82 STM3734 [J] COG0689 RNase PH Sty Salmonella typhimurium LT2 299 3e-81 rph [J] COG0689 RNase PH Eco Escherichia coli K12 298 9e-81 YPO0044 [J] COG0689 RNase PH Ype Yersinia pestis 289 3e-78 >RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum Length = 238 Score = 353 bits (905), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 171/237 (72%), Positives = 195/237 (82%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RPSGR P+QLR V LTR YT+HAEGSVLV FGDT VLCTAS+ KVP KG G+GW+TA Sbjct: 2 RPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR DREAA+GKQSGRTQEIQRLIGRA+R+ FDL A GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VAA+DA + ++ +G + P++ FVAA+SVGV GVPVLDLDYPED+ Sbjct: 122 DGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDA 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 CDTDMN+VMT AG FVEVQGTAEG F R ++ALL LA GI TL GLQ+QALGL Sbjct: 182 SCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALGL 238 >PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa Length = 239 Score = 335 bits (858), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 164/236 (69%), Positives = 192/236 (81%) Query: 5 HRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLT 64 +RPSGR+ +QLR +R+TR YTKHAEGSVLVEFGDT+V+CT S E VP FLKG+GQGWLT Sbjct: 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLT 61 Query: 65 AEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQ 124 AEYGMLPRST R REA++GKQ GRT EIQRLIGR+LRAA DL GE TL +DCDV+Q Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121 Query: 125 ADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPED 184 ADGGTRTA+ITGA VA DA A LK +G ++ P+K VAA+SVG+++GVPVLDLDY ED Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181 Query: 185 SDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 S +TD+NVVMTDAG F+EVQGTAEGA F A LNA+L+LAQQG+ L LQR AL Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAAL 237 >XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c Length = 241 Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 156/235 (66%), Positives = 186/235 (79%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RPSGR + LR VR+ R +T HAEGSVLV FG+T V+CTAS+E KVP FL+ KG+GW+TA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR +REAA+GKQ+GRT EIQRLIGRALR D A GERT+ LDCDVLQA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTAAITGA VA DA L+ +G ++ P+ VAA+SVG+++G+PVLDLDYPEDS Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYPEDS 184 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 DCDTDMNVVM D G +E+QGTAE AF R L+ LL LA++G A L +QR+AL Sbjct: 185 DCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREAL 239 >HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae Length = 238 Score = 312 bits (799), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 152/237 (64%), Positives = 181/237 (76%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+ R Q R++++TR YTKHAEGSVLVEFGDT+VLCTA++E+ VP FLKG+GQGW+TA Sbjct: 2 RPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA DL+A GER + LDCDV+QA Sbjct: 62 EYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA GL G ++ P+K V+AISVG+ G V DL+Y EDS Sbjct: 122 DGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 +TDMNVVM + G +EVQGTAEG F L LLDLA+QG + QR+ALGL Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALGL 238 >PM1876 [J] COG0689 RNase PH Pmu Pasteurella multocida Length = 238 Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 153/235 (65%), Positives = 182/235 (77%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+ R+ Q R +++TR YTKHAEGSVLVEFGDT+VLCTA++EE VP FLKG+ QGW+TA Sbjct: 2 RPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVTA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA DLEA GER++ LDCDV+QA Sbjct: 62 EYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA GL G ++ P+K VAAISVG+ +GVPV DL+Y EDS Sbjct: 122 DGGTRTASITGACVALCDAIHGLVENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 +TDMNVVM + G +EVQGTAEG F L LL LA++G + +QRQAL Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQRQAL 236 >Zrph [J] COG0689 RNase PH EcZ Escherichia coli O157:H7 EDL933 Length = 238 Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/235 (67%), Positives = 179/235 (76%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+GRS Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA Sbjct: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR REAAKGKQ GRT EIQRLI RALRAA DL+A GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA L G ++ P+K VAA+SVG+ G V DL+Y EDS Sbjct: 122 DGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 +TDMNVVMT+ G +EVQGTAEG F L LL LA+ GI ++ Q+ AL Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAAL 236 >ECs4518 [J] COG0689 RNase PH Ecs Escherichia coli O157:H7 Length = 238 Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/235 (67%), Positives = 179/235 (76%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+GRS Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA Sbjct: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR REAAKGKQ GRT EIQRLI RALRAA DL+A GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA L G ++ P+K VAA+SVG+ G V DL+Y EDS Sbjct: 122 DGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 +TDMNVVMT+ G +EVQGTAEG F L LL LA+ GI ++ Q+ AL Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAAL 236 >STM3734 [J] COG0689 RNase PH Sty Salmonella typhimurium LT2 Length = 238 Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 154/235 (65%), Positives = 179/235 (76%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+GRS Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA Sbjct: 2 RPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPR+THTR REAAKGKQ GRT EIQRLI RALRAA DL+ GE T+ LDCDV+QA Sbjct: 62 EYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA L + G ++ P+K VAA+SVG+ G + DL+Y EDS Sbjct: 122 DGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 +TDMNVVMT+ G +EVQGTAEG F L LL LA+ GI ++ Q+ AL Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAAL 236 >rph [J] COG0689 RNase PH Eco Escherichia coli K12 Length = 228 Score = 298 bits (762), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 148/208 (71%), Positives = 165/208 (79%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+GRS Q+R V LTR YTKHAEGSVLVEFGDT+VLCTASIEE VP FLKG+GQGW+TA Sbjct: 2 RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTR REAAKGKQ GRT EIQRLI RALRAA DL+A GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+ITGA VA DA L G ++ P+K VAA+SVG+ G V DL+Y EDS Sbjct: 122 DGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAF 213 +TDMNVVMT+ G +EVQGTAEG F Sbjct: 182 AAETDMNVVMTEDGRIIEVQGTAEGEPF 209 >YPO0044 [J] COG0689 RNase PH Ype Yersinia pestis Length = 238 Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 152/235 (64%), Positives = 182/235 (77%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 RP+ R+ +Q+R + LTR YTKHAEGSVLVEFGDT+VLCTA++EE VP FLKG+GQGW+TA Sbjct: 2 RPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITA 61 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTH+R REAAKGKQ GRT EIQRLI R+LRAA DL+ GE T+ LDCDVLQA Sbjct: 62 EYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQA 121 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+I+GA VA DA L + G ++A P+K VAA+SVG+ KG + DL+Y EDS Sbjct: 122 DGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDS 181 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 +TDMNVVM + G +EVQGTAEG F L ALLDLA+ GI T+ Q+ AL Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAAL 236