BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0130.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0313 [E] COG0765 ABC-type amino acid transport system, permeas... 262 5e-70 DR0565 [E] COG0765 ABC-type amino acid transport system, permeas... 212 5e-55 CC1440 [E] COG0765 ABC-type amino acid transport system, permeas... 204 1e-52 STM1952 [E] COG0765 ABC-type amino acid transport system, permea... 202 5e-52 ZyecS [E] COG0765 ABC-type amino acid transport system, permease... 202 6e-52 ECs2656 [E] COG0765 ABC-type amino acid transport system, permea... 202 6e-52 yecS [E] COG0765 ABC-type amino acid transport system, permease ... 202 6e-52 YPO1847 [E] COG0765 ABC-type amino acid transport system, permea... 187 2e-47 BS_yckA [E] COG0765 ABC-type amino acid transport system, permea... 185 6e-47 BH0171 [E] COG0765 ABC-type amino acid transport system, permeas... 181 1e-45 >PA0313 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 230 Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 139/212 (65%), Positives = 170/212 (80%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 ++ELL A P L +G YT+LFA SM+ GL+LGF +AV R+ + AA+YVS Sbjct: 13 NLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAF 72 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPLLVQIFV+YYGLP +GIEF+P+TAG+L L+LN +AYLSES+RGAILG+ +GQW A Sbjct: 73 RGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAG 132 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 SVGLT+ QTL II PQA+R+AVPS+SN+LISLIKDTSL+SVITVTELMLATKEVIA T Sbjct: 133 LSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAET 192 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKL 213 F+PLPLY+AAA IYW+LS FE +Q LE +L Sbjct: 193 FQPLPLYLAAAGIYWLLSALFERVQKALENRL 224 >DR0565 [E] COG0765 ABC-type amino acid transport system, permease component Dra Deinococcus radiodurans Length = 226 Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 115/214 (53%), Positives = 154/214 (71%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 IL+ A PTL TL FALA+M+ GL LGF +A+AR+ + + ++VS + Sbjct: 8 SILQSAWHALPTLLAATPVTLGFALAAMVLGLPLGFAVALARLSRLGWLRTLSGLFVSFI 67 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPLLVQIFV+YYGLP +GI+FSP+ GV+ L+LNA+AYLSE++R AIL + GQ AA Sbjct: 68 RGTPLLVQIFVIYYGLPSLGIQFSPVVGGVIALTLNAAAYLSETIRAAILSIPPGQREAA 127 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+GL+ QT+R II+PQA R+A+PS+SNTLI L+KDTSLVSVITV EL+ + + VIA T Sbjct: 128 TSLGLSGAQTMRLIILPQAARVALPSLSNTLIGLVKDTSLVSVITVVELLRSAQLVIART 187 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGK 215 F P Y+AAA IYW++S E +Q LE++ + Sbjct: 188 FEPFGPYLAAALIYWLVSSLLEVVQRALERRFSR 221 >CC1440 [E] COG0765 ABC-type amino acid transport system, permease component Ccr Caulobacter vibrioides Length = 219 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 144/215 (66%) Query: 4 LELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRG 63 L+LL+Q+AP L KG GYT++ ++ M G+VLGF+LA+ R+ + WPA +YVS RG Sbjct: 5 LDLLRQSAPLLLKGAGYTIVLSVIGMSIGVVLGFLLALMRLSRSALLRWPAGVYVSAFRG 64 Query: 64 TPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFS 123 TPLLVQ+F++YYGLP G+E PL A + SLN +AY E LR AI V +GQW AA Sbjct: 65 TPLLVQLFLIYYGLPQFGLEMPPLVAAGIGFSLNVAAYSCEILRSAIAAVDKGQWEAASV 124 Query: 124 VGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFR 183 +G++ QTLR +I+PQA R AV +SN+ ISL+KDTSL + I V EL + + A T+ Sbjct: 125 LGMSRGQTLRRVILPQAARTAVAPLSNSFISLVKDTSLAATIQVPELFRQAQLITARTYE 184 Query: 184 PLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 LY+AAAAIYW+LS A Q RLE++ + + Sbjct: 185 IFTLYLAAAAIYWILSTILAAAQTRLERRAAEGRR 219 >STM1952 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 222 Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 98/217 (45%), Positives = 146/217 (67%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 E ++L+ ++ P L KG +TL ++ M GL+LGFVLA+ R+ P P+ W A Y+S+ Sbjct: 3 ESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYISIF 62 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPL+ Q+F++YYGLP GIE P+ A ++ LSLN +AY SE+LR AI + +GQW AA Sbjct: 63 RGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWEAA 122 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G+T +QTLR I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + T Sbjct: 123 ASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRT 182 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 +Y+AA+ IYW+++ ALQ+ E +L + + Sbjct: 183 LEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQER 219 >ZyecS [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 222 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 145/217 (66%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 E ++L+ + P L KG GYTL ++ M GL+LGF+LA+ R+ P P+ W A Y+S+ Sbjct: 3 ESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIF 62 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPL+ Q+F++YYGLP GIE P+ + ++ LSLN +AY +E+LR AI + +GQW AA Sbjct: 63 RGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYTAETLRAAISSIDKGQWEAA 122 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G+T +QT+R I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + T Sbjct: 123 ASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRT 182 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 +Y+AA+ IYW+++ LQ+ E +L + + Sbjct: 183 LEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQER 219 >ECs2656 [E] COG0765 ABC-type amino acid transport system, permease component Ecs Escherichia coli O157:H7 Length = 222 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 145/217 (66%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 E ++L+ + P L KG GYTL ++ M GL+LGF+LA+ R+ P P+ W A Y+S+ Sbjct: 3 ESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIF 62 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPL+ Q+F++YYGLP GIE P+ + ++ LSLN +AY +E+LR AI + +GQW AA Sbjct: 63 RGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYTAETLRAAISSIDKGQWEAA 122 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G+T +QT+R I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + T Sbjct: 123 ASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRT 182 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 +Y+AA+ IYW+++ LQ+ E +L + + Sbjct: 183 LEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQER 219 >yecS [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 222 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 145/217 (66%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 E ++L+ + P L KG GYTL ++ M GL+LGF+LA+ R+ P P+ W A Y+S+ Sbjct: 3 ESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIF 62 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPL+ Q+F++YYGLP GIE P+ + ++ LSLN +AY +E+LR AI + +GQW AA Sbjct: 63 RGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAA 122 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G+T +QT+R I+PQA R+A+P +SN+ ISL+KDTSL + I V EL + + + T Sbjct: 123 ASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRT 182 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 +Y+AA+ IYW+++ LQ+ E +L + + Sbjct: 183 LEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQER 219 >YPO1847 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 220 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 140/217 (64%) Query: 2 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 61 E ++L+ +AP L KG TL +L M GL+LGF+LA+ R+ + P + YVS+ Sbjct: 3 ESMQLVLDSAPFLLKGAWLTLQLSLGGMFFGLLLGFMLAMMRLSHFWPFSLISRFYVSIF 62 Query: 62 RGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAA 121 RGTPL+ Q+F++YYGLP GIE P+ A ++ LSLN +AY SE+LR AI + +GQW AA Sbjct: 63 RGTPLIAQLFMIYYGLPQFGIELEPMPAALIGLSLNTAAYTSETLRAAISSIEKGQWEAA 122 Query: 122 FSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G+T +Q L +I+PQA R A+P + N+ I L+KDTSL + I V EL + + + T Sbjct: 123 ASIGMTRWQALYRVILPQAGRTALPPLGNSFIGLVKDTSLAATIQVPELFRQAQLITSRT 182 Query: 182 FRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 218 +Y+AA+ IYW+++ ALQ+RLE + + Q Sbjct: 183 MEVFTMYLAASLIYWIMATLLSALQNRLEAHVNRQDQ 219 >BS_yckA [E] COG0765 ABC-type amino acid transport system, permease component Bsu Bacillus subtilis Length = 226 Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 139/204 (68%) Query: 9 QAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLV 68 ++ P + KG+GYTLL + SM G V+G +++AR+ + WPA +Y+S MRG P+LV Sbjct: 18 ESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLRWPAKLYISFMRGVPILV 77 Query: 69 QIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTY 128 +F++Y+G P +GIEFS +TA ++ SLN++AY++E R AI V +GQW AA S+GL+Y Sbjct: 78 ILFILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSY 137 Query: 129 FQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLY 188 +QT+R II+PQ++RIA+P ++N L+ LIK +SL ++ITV EL+ K + F + +Y Sbjct: 138 WQTMRGIILPQSIRIALPPLANVLLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMY 197 Query: 189 VAAAAIYWMLSLCFEALQHRLEKK 212 + A IYW + Q+ LEKK Sbjct: 198 ILTALIYWAICSIAAVFQNILEKK 221 >BH0171 [E] COG0765 ABC-type amino acid transport system, permease component Bha Bacillus halodurans Length = 233 Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 132/204 (64%) Query: 12 PTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIF 71 P L + YT+ L S GL + + A+ARI P+ A +YVS++RGTPLLVQ+F Sbjct: 26 PLLKGALYYTIPLTLISFTIGLFIAVLTALARISGVAPLKMVARVYVSIIRGTPLLVQLF 85 Query: 72 VVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQT 131 +++YGLP +G+ P A V+ SLN AY SE +R AIL + +GQW AA+S+G++Y Q Sbjct: 86 IIFYGLPSIGVTIDPFPAAVIGFSLNVGAYASEIIRAAILSIPKGQWEAAYSIGMSYPQA 145 Query: 132 LRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAA 191 L+ I++PQA R+++P +SN+ ISL+KDTSL S+I V E+ +E+ A + L LY A Sbjct: 146 LKRIVLPQASRVSIPPLSNSFISLVKDTSLASLILVAEMFRRAQEIAATNYEFLLLYAQA 205 Query: 192 AAIYWMLSLCFEALQHRLEKKLGK 215 AIYW++ +Q R+E +L + Sbjct: 206 GAIYWIICFGLSLVQGRIENRLDR 229