BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0107.p (295 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralston... 423 e-118 NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisser... 253 4e-67 NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisser... 253 4e-67 lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeri... 239 6e-63 BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus... 235 1e-61 PM1985 [J] COG0264 Translation elongation factor Ts Pmu Pasteure... 228 1e-59 XF2579 [J] COG0264 Translation elongation factor Ts Xfa Xylella ... 228 1e-59 STM0217 [J] COG0264 Translation elongation factor Ts Sty Salmone... 225 8e-59 tsf [J] COG0264 Translation elongation factor Ts Eco Escherichia... 224 2e-58 Ztsf [J] COG0264 Translation elongation factor Ts EcZ Escherichi... 224 2e-58 >RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralstonia solanacearum Length = 294 Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/280 (74%), Positives = 245/280 (87%), Gaps = 3/280 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MAAITA+MV +LRAKTDAPMMECKKALTEA+G+M KAEEILRVKLG+KA KA++RITAEG Sbjct: 3 MAAITASMVAELRAKTDAPMMECKKALTEAEGNMEKAEEILRVKLGNKAGKAAARITAEG 62 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI+++I G +GALVE+NCETDFV++ND+F+G AKL+ QNPADVAAL A + D + Sbjct: 63 VIASFIDGTIGALVELNCETDFVSRNDDFLGFANEIAKLIATQNPADVAALSALSIGD-E 121 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180 T+E +RT LIG+IGENM+ RRFQRFE + KLASYLHGTRIGV+V FDG DE KDVAMH Sbjct: 122 TVEAVRTRLIGKIGENMTIRRFQRFEGT-KLASYLHGTRIGVMVAFDG-DEVAAKDVAMH 179 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 AAMKPVALS+++VPA+LI KERS+A KAAESGKPA+IVAKMV+GSVQKYLKEVSL NQ Sbjct: 180 AAAMKPVALSSDEVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQ 239 Query: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDF 280 FVKNDKQ+VEQMLKAAN+TVK F ++VVGEGIEKKQDDF Sbjct: 240 PFVKNDKQTVEQMLKAANTTVKGFTLFVVGEGIEKKQDDF 279 >NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisseria meningitidis MC58 Length = 284 Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/278 (50%), Positives = 180/278 (64%), Gaps = 10/278 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRI--GVIVEFDGADEQVGKDVA 178 +E R +I ++GENMS RRFQ +T+ +L +Y+HG GV+VE+ G+ E V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKK 276 QAFV N Q+V Q K + V SF Y VG+GIEKK Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisseria meningitidis Z2491 Length = 284 Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/278 (50%), Positives = 180/278 (64%), Gaps = 10/278 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRI--GVIVEFDGADEQVGKDVA 178 +E R +I ++GENMS RRFQ +T+ +L +Y+HG GV+VE+ G+ E V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKK 276 QAFV N Q+V Q K + V SF Y VG+GIEKK Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeria innocua Length = 294 Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/292 (46%), Positives = 185/292 (63%), Gaps = 4/292 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV +LR KT A MM+CKKAL E +GDM KA + LR K +KA+K S R+ +EG Sbjct: 1 MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 + ++EVN ETDFV KND F LV+A AK ++E P + ++P+G+ Sbjct: 61 MTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILEVRPDSLEDALKTEMPNGQ 120 Query: 121 TLEELRTELIGRIGENMSFRRFQRFET--SAKLASYLH-GTRIGVIVEFDG-ADEQVGKD 176 T+++ TE I +IGEN+S RRF+ E ++ Y+H RIGV+ +G D V KD Sbjct: 121 TVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGVLTLLEGTTDTTVAKD 180 Query: 177 VAMHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVS 236 VAMHIAA+ P +S E V + +E E+ V +A GKPA+IV KMV+G ++KYL E+S Sbjct: 181 VAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEGRLKKYLSEIS 240 Query: 237 LFNQAFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAAQV 288 L +Q FVKN +V + +K + V SF + VGEGIEKK+D+F EV +QV Sbjct: 241 LEDQPFVKNPDITVGEYVKQSGGKVVSFVRFEVGEGIEKKEDNFVEEVMSQV 292 >BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus subtilis Length = 293 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/290 (46%), Positives = 187/290 (64%), Gaps = 4/290 (1%) Query: 3 AITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEGVI 62 AITA V +LR KT A MM+CKKALTE DGDM KA ++LR K +KA+K + RI AEG Sbjct: 2 AITAQQVKELREKTGAGMMDCKKALTETDGDMDKAIDLLREKGIAKAAKKADRIAAEGST 61 Query: 63 STYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGKTL 122 GN G ++EVN ETDFV KN+ F L+ A ++ PADV K+ +G T+ Sbjct: 62 LIKTDGNKGVILEVNSETDFVAKNEGFKELLNTLADHLLANTPADVEEAMGQKMENGSTV 121 Query: 123 EELRTELIGRIGENMSFRRFQRF--ETSAKLASYLH-GTRIGVIVEFDG-ADEQVGKDVA 178 EE T + +IGE ++ RRF + S+ +YLH G RIGV+ +G DE+ KD+A Sbjct: 122 EEYITSAVAKIGEKITLRRFTVLTKDDSSAFGAYLHMGGRIGVLTVLNGTTDEETAKDIA 181 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLF 238 MH+AA+ P +S +QV + ER + +A + GKP +IVAKMV+G + K+ +E+ L Sbjct: 182 MHVAAVNPRYISRDQVSEEETNHERQILTQQALQEGKPENIVAKMVEGRLNKFFEEICLL 241 Query: 239 NQAFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAAQV 288 +QAFVKN + V+Q++ A N+TV++F Y VGEGIEK+Q++FA EV QV Sbjct: 242 DQAFVKNPDEKVKQVIAAKNATVQTFVRYEVGEGIEKRQENFAEEVMNQV 291 >PM1985 [J] COG0264 Translation elongation factor Ts Pmu Pasteurella multocida Length = 282 Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 176/286 (61%), Gaps = 8/286 (2%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA++V +LR +T A MMECKKAL EA+GD+ A + +R +KA+K + R+ AEG Sbjct: 1 MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAAKKAGRVAAEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI I G LVE+NCETDFV K+ F+GL A + + AL A Sbjct: 61 VILARIGAGFGVLVEMNCETDFVAKDAGFLGLANEVADYALANKGVTIEALQA------- 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180 EE R L+ +IGENM+ RR Q F + SYLHG +IGV+V ADE + K +AMH Sbjct: 114 QFEEKRATLVAKIGENMNIRRVQ-FLDGDVVGSYLHGAKIGVLVAGKNADEDLLKKIAMH 172 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 +AA +P + E V AD++ KER + A ESGKP +I KMV+G ++K+ EVSL Q Sbjct: 173 VAASRPEFVKPEDVSADVVAKEREIQVAIAMESGKPREIAEKMVEGRMKKFTGEVSLTGQ 232 Query: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAA 286 FV + +SV + LK + + V +F + VGEGIEK + DFAAEVAA Sbjct: 233 PFVMDPAKSVGEFLKESGADVTNFVRFEVGEGIEKVESDFAAEVAA 278 >XF2579 [J] COG0264 Translation elongation factor Ts Xfa Xylella fastidiosa 9a5c Length = 299 Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/288 (44%), Positives = 179/288 (62%), Gaps = 2/288 (0%) Query: 4 ITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEGVIS 63 ITA++V +LR +T MMECKKAL+E G++ A E LR KA K + RI AEG I Sbjct: 10 ITASLVKELRERTGVGMMECKKALSENAGNIDAAVEWLRKSGLVKADKKAGRIAAEGRIV 69 Query: 64 TYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGKTLE 123 G LVE+N ETDFV K+ F+ EA A+ + DV AL + KLP G+T+E Sbjct: 70 VVHDGGKAVLVEINSETDFVAKDSHFLAFAEAVAQAALVAGAVDVEALKSVKLPSGETVE 129 Query: 124 ELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMHIAA 183 E R +I +IGEN+ RR R +++ +A+Y+HG RIGV+VE G D ++ + +AMH+AA Sbjct: 130 EARAAVIAKIGENVRVRRLARIDSANNVAAYVHGGRIGVLVEVKGGDVELARGIAMHVAA 189 Query: 184 MKPVALSAEQVPADLIEKERSVAALKAAE--SGKPADIVAKMVDGSVQKYLKEVSLFNQA 241 M P V A+ +EKE+ + K +E KPADI+ K++ G + K +KEV+L+ Q Sbjct: 190 MNPPYNKVADVSAEFLEKEKEIELSKMSEKDKSKPADILEKIISGKINKIVKEVTLYGQP 249 Query: 242 FVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAAQVA 289 +V N QSVEQ++KAA + V F VGEGIEK +D+A+EV QV Sbjct: 250 YVLNADQSVEQVVKAAGADVIGFQRMEVGEGIEKIVEDYASEVMKQVG 297 >STM0217 [J] COG0264 Translation elongation factor Ts Sty Salmonella typhimurium LT2 Length = 283 Score = 225 bits (574), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 174/286 (60%), Gaps = 8/286 (2%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA++V +LR +T A MM+CKKALTEA+GD+ A E +R KA+K + + A+G Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI T I GNV ++EVNC+TDFV K+ F + V DV L A Sbjct: 61 VIKTKIDGNVAFILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA------- 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180 EE R L+ +IGEN++ RR E L SY HG RIGV+V GADE++ K +AMH Sbjct: 114 QFEEERVALVAKIGENINIRRVASLEGDV-LGSYQHGARIGVLVAAKGADEELVKQLAMH 172 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 +AA KP + E V AD++EKE V A +SGKP +I KMV+G ++K+ EVSL Q Sbjct: 173 VAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQ 232 Query: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAA 286 FV +SV Q+LK N+ V F + VGEGIEK + DFAAEVAA Sbjct: 233 PFVMEPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEVAA 278 >tsf [J] COG0264 Translation elongation factor Ts Eco Escherichia coli K12 Length = 283 Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 174/286 (60%), Gaps = 8/286 (2%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA++V +LR +T A MM+CKKALTEA+GD+ A E +R KA+K + + A+G Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI T I GN G ++EVNC+TDFV K+ F + V DV L A Sbjct: 61 VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA------- 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180 EE R L+ +IGEN++ RR E L SY HG RIGV+V GADE++ K +AMH Sbjct: 114 QFEEERVALVAKIGENINIRRVAALEGDV-LGSYQHGARIGVLVAAKGADEELVKHIAMH 172 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 +AA KP + E V A+++EKE V A +SGKP +I KMV+G ++K+ EVSL Q Sbjct: 173 VAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQ 232 Query: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAA 286 FV ++V Q+LK N+ V F + VGEGIEK + DFAAEVAA Sbjct: 233 PFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAA 278 >Ztsf [J] COG0264 Translation elongation factor Ts EcZ Escherichia coli O157:H7 EDL933 Length = 283 Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 174/286 (60%), Gaps = 8/286 (2%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA++V +LR +T A MM+CKKALTEA+GD+ A E +R KA+K + + A+G Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI T I GN G ++EVNC+TDFV K+ F + V DV L A Sbjct: 61 VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA------- 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180 EE R L+ +IGEN++ RR E L SY HG RIGV+V GADE++ K +AMH Sbjct: 114 QFEEERVALVAKIGENINIRRVAALEGDV-LGSYQHGARIGVLVAAKGADEELVKHIAMH 172 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240 +AA KP + E V A+++EKE V A +SGKP +I KMV+G ++K+ EVSL Q Sbjct: 173 VAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQ 232 Query: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDFAAEVAA 286 FV ++V Q+LK N+ V F + VGEGIEK + DFAAEVAA Sbjct: 233 PFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAA 278