BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0105.p (186 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1407 [J] COG0233 Ribosome recycling factor Rso Ralstonia sola... 297 1e-80 NMB0187 [J] COG0233 Ribosome recycling factor Nme Neisseria meni... 242 4e-64 NMA0080 [J] COG0233 Ribosome recycling factor NmA Neisseria meni... 242 4e-64 PM1987 [J] COG0233 Ribosome recycling factor Pmu Pasteurella mul... 221 8e-58 VC2257 [J] COG0233 Ribosome recycling factor Vch Vibrio cholerae 215 5e-56 STM0219 [J] COG0233 Ribosome recycling factor Sty Salmonella typ... 207 9e-54 frr [J] COG0233 Ribosome recycling factor Eco Escherichia coli K12 206 3e-53 Zfrr [J] COG0233 Ribosome recycling factor EcZ Escherichia coli ... 206 3e-53 ECs0174 [J] COG0233 Ribosome recycling factor Ecs Escherichia co... 206 3e-53 HI0808 [J] COG0233 Ribosome recycling factor Hin Haemophilus inf... 201 7e-52 >RSc1407 [J] COG0233 Ribosome recycling factor Rso Ralstonia solanacearum Length = 186 Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/186 (76%), Positives = 165/186 (88%) Query: 1 MSVADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTL 60 MSVAD+KK++EQKM KSI+ KA+LAKVRTGRAHTGLLD V VDYYGS +SQVANL L Sbjct: 1 MSVADIKKSAEQKMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGL 60 Query: 61 IDARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKG 120 DARTI VQP+EKKMV+ VE+AIR+ADLGLNPAT GE+IRVPMPPLTEERRKE+ K+VK Sbjct: 61 ADARTISVQPWEKKMVSAVERAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKS 120 Query: 121 EAEDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKE 180 E EDAK+AVRN+RR+ NE KKLVKDK SEDDERRGQDE+QKLTD+FVAE+DKLV++K+ Sbjct: 121 EGEDAKVAVRNVRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVAEVDKLVAEKD 180 Query: 181 KEVMTV 186 KE+MTV Sbjct: 181 KEIMTV 186 >NMB0187 [J] COG0233 Ribosome recycling factor Nme Neisseria meningitidis MC58 Length = 185 Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 156/184 (84%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 + D++K +E KM +S+E LK NLAKVRTGRAHTGLLDQV V+Y+GS +SQVAN+TL+D Sbjct: 2 INDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLD 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 ARTIGV+P+E M A VEKAIR+++LGLNPA G+LIRVPMP LTEERRK+++K+V+GEA Sbjct: 62 ARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E+ ++++RN+RR+ N+ +KKL+KDK SED+ RRG++ +QKLTDK++ E DKL++ KE++ Sbjct: 122 EEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEED 181 Query: 183 VMTV 186 +M + Sbjct: 182 LMAI 185 >NMA0080 [J] COG0233 Ribosome recycling factor NmA Neisseria meningitidis Z2491 Length = 185 Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 156/184 (84%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 + D++K +E KM +S+E LK NLAKVRTGRAHTGLLDQV V+Y+GS +SQVAN+TL+D Sbjct: 2 INDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLD 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 ARTIGV+P+E M A VEKAIR+++LGLNPA G+LIRVPMP LTEERRK+++K+V+GEA Sbjct: 62 ARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E+ ++++RN+RR+ N+ +KKL+KDK SED+ RRG++ +QKLTDK++ E DKL++ KE++ Sbjct: 122 EEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEED 181 Query: 183 VMTV 186 +M + Sbjct: 182 LMAI 185 >PM1987 [J] COG0233 Ribosome recycling factor Pmu Pasteurella multocida Length = 185 Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 101/182 (55%), Positives = 147/182 (80%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 + ++KK+++ +M KS+ET K ++AKVRTGRA LLD + V+YYGSPT L Q+AN+ D Sbjct: 2 INEIKKDTQLRMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 ART+ V +++ +++ VEKAI +DLGLNP++ G IRVP+PPLTEERR++++K+VKGEA Sbjct: 62 ARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E KIAVRN+RR+ N+ +K L+KDK SED+ER+ QDEIQK+TD FV ++D++++DKEKE Sbjct: 122 EQGKIAVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEVLADKEKE 181 Query: 183 VM 184 ++ Sbjct: 182 LL 183 >VC2257 [J] COG0233 Ribosome recycling factor Vch Vibrio cholerae Length = 185 Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 144/184 (78%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 + ++KK+++++M KS+E LK L+K+RTGRAH LL + VDYYG+PT L+QVAN+ D Sbjct: 2 INEIKKDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 ART+ + +++++ VEKAI +DLGLNP + G +IRVP+PPLTEERR+++VK+V+GEA Sbjct: 62 ARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E ++AVRNIRR+ N LK L+KDK SEDDERR Q+EIQKLTD V +ID +++ KEKE Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKE 181 Query: 183 VMTV 186 +M V Sbjct: 182 LMEV 185 >STM0219 [J] COG0233 Ribosome recycling factor Sty Salmonella typhimurium LT2 Length = 185 Score = 207 bits (528), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 142/182 (78%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 ++D++K++E +M K +E K ++KVRTGRA LLD ++V+YYG+PT L Q+A++T+ D Sbjct: 2 ISDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 +RT+ + +++ M VEKAI +DLGLNP++ G IRVP+PPLTEERRK++ K+V+GEA Sbjct: 62 SRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E A++AVRN+RR+ N+ +K L+KDK SEDD+RR Q+E+QK+TD + ++D ++DKE E Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDAALADKEAE 181 Query: 183 VM 184 +M Sbjct: 182 LM 183 >frr [J] COG0233 Ribosome recycling factor Eco Escherichia coli K12 Length = 185 Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 141/182 (77%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 ++D++K++E +M K +E K ++K+RTGRA LLD ++V+YYG+PT L Q+A++T+ D Sbjct: 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 +RT+ + +++ M VEKAI +DLGLNP + G IRVP+PPLTEERRK++ K+V+GEA Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E A++AVRN+RR+ N+ +K L+KDK SEDD+RR QD++QKLTD + +I+ ++DKE E Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181 Query: 183 VM 184 +M Sbjct: 182 LM 183 >Zfrr [J] COG0233 Ribosome recycling factor EcZ Escherichia coli O157:H7 EDL933 Length = 185 Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 141/182 (77%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 ++D++K++E +M K +E K ++K+RTGRA LLD ++V+YYG+PT L Q+A++T+ D Sbjct: 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 +RT+ + +++ M VEKAI +DLGLNP + G IRVP+PPLTEERRK++ K+V+GEA Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E A++AVRN+RR+ N+ +K L+KDK SEDD+RR QD++QKLTD + +I+ ++DKE E Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181 Query: 183 VM 184 +M Sbjct: 182 LM 183 >ECs0174 [J] COG0233 Ribosome recycling factor Ecs Escherichia coli O157:H7 Length = 185 Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 141/182 (77%) Query: 3 VADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLID 62 ++D++K++E +M K +E K ++K+RTGRA LLD ++V+YYG+PT L Q+A++T+ D Sbjct: 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61 Query: 63 ARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEA 122 +RT+ + +++ M VEKAI +DLGLNP + G IRVP+PPLTEERRK++ K+V+GEA Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121 Query: 123 EDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKE 182 E A++AVRN+RR+ N+ +K L+KDK SEDD+RR QD++QKLTD + +I+ ++DKE E Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181 Query: 183 VM 184 +M Sbjct: 182 LM 183 >HI0808 [J] COG0233 Ribosome recycling factor Hin Haemophilus influenzae Length = 185 Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 142/179 (79%) Query: 6 VKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLIDART 65 +KK+++ +M KS+E LK +++K+RTGRA LLD + V+YYG+ T L Q+AN+ DART Sbjct: 5 IKKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDART 64 Query: 66 IGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEAEDA 125 + V +++ +++ VEKAI +DLGLNP++ G IRVP+PPLTEERR++++K+VKGE E Sbjct: 65 LAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQG 124 Query: 126 KIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKEVM 184 K+AVRN+RR+ N+ +K L+KDK SE+++ + ++EIQK+TD ++ ++D++++DKEKE+M Sbjct: 125 KVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELM 183