BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0033.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport... 284 1e-76 BMEII0066 [E] COG0411 ABC-type branched-chain amino acid transpo... 241 2e-63 RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport... 188 1e-47 BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transpo... 182 8e-46 AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport... 177 2e-44 SMc03120 [E] COG0411 ABC-type branched-chain amino acid transpor... 171 1e-42 mll4886 Non COG 169 7e-42 RSc2246 [E] COG0411 ABC-type branched-chain amino acid transport... 161 1e-39 SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ... 160 2e-39 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 157 2e-38 >RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 266 Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 144/241 (59%), Positives = 180/241 (74%) Query: 6 ALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTL 65 AL L+ + K F + I+RGV+L + GER ALIGPNGAGKS+ F+L+SGR+ AG V L Sbjct: 7 ALELRDVRKRFGATEIIRGVNLTIGRGERHALIGPNGAGKSTTFNLISGRFAPSAGSVRL 66 Query: 66 HGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSHE 125 +G +I +P +INR GL+RSFQIT++F RLS FEN+RCA+LW+LGY+Y+FW R+ + Sbjct: 67 NGEEIAGLAPYEINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYQYSFWHRLAELRD 126 Query: 126 ASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAES 185 A RA VL+Q+GL R D AAG L+YAEQRALE+ +TIA A VILLDEPTAGMSR+ES Sbjct: 127 ARERAEAVLEQIGLTHRHDAAAGTLTYAEQRALEIGITIAGGADVILLDEPTAGMSRSES 186 Query: 186 AAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQALY 245 V LIR+VT+GKTL+MVEHDM VVF LADRI+V+ G VIA DT IR N V+ Y Sbjct: 187 DHAVDLIRKVTVGKTLVMVEHDMSVVFGLADRISVLVYGEVIATDTPEAIRNNRRVKEAY 246 Query: 246 L 246 L Sbjct: 247 L 247 >BMEII0066 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 251 Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/251 (47%), Positives = 168/251 (66%) Query: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 M+ L L L+K+F + I+RGV+L + GER A+IGPNGAGKS+LFHL+SG + + Sbjct: 1 MMTKDILVLDQLNKSFGPAHIIRGVNLAVRDGERHAVIGPNGAGKSTLFHLISGNFTPSS 60 Query: 61 GRVTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 G + G +I +P +NR GLARSFQIT++FP L+ FEN+R A++ ++ FWR + Sbjct: 61 GSIRFQGEEIGGLTPAAVNRKGLARSFQITNIFPGLTVFENIRLAVMRRYKVQFTFWRPV 120 Query: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 + +A ++L+QV L ARA A +LSY+EQR+LE+ +T+A+D +I+LDEP AGM Sbjct: 121 SSMRKVTAEVESLLEQVRLTARAYTLASQLSYSEQRSLEIGMTLASDPRLIILDEPMAGM 180 Query: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 S+ E+ V LIRE+T +TL++VEHDM VVF LADRI+V+ G +IA T IR N Sbjct: 181 SQEETDYTVGLIREITQNRTLMIVEHDMYVVFTLADRISVLVYGEIIATGTPKEIRENAR 240 Query: 241 VQALYLDRRRH 251 V+ YL H Sbjct: 241 VREAYLGEEAH 251 >RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 256 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/246 (41%), Positives = 143/246 (58%) Query: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 M + L +GL KAF G + V+L + G ALIGPNGAGK++ F+L++ Sbjct: 1 MAQDIILETRGLTKAFKGFTAVSDVNLRVRRGSIHALIGPNGAGKTTCFNLLTKFLVPTR 60 Query: 61 GRVTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 G + +GVDIT + P QI R G+ RSFQI+++FP LS ENVR L LG YAFWR Sbjct: 61 GTILFNGVDITPERPAQIARRGVIRSFQISAVFPHLSVLENVRIGLQRQLGTAYAFWRSE 120 Query: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 + RA+ +L QVGL A EL Y +RALE+A T+A + ++LLDEPT GM Sbjct: 121 KTLAVLNDRAMQLLDQVGLTPFAGTVTVELPYGRKRALEIATTLAMEPELMLLDEPTQGM 180 Query: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 + + LI+ V G+T+LMVEH+M VV +AD+I V+ G+++A + N Sbjct: 181 GHEDVDRVTELIQRVAEGRTILMVEHNMNVVSSIADKITVLQRGQILAEGPYEDVSKNPQ 240 Query: 241 VQALYL 246 V Y+ Sbjct: 241 VMEAYM 246 >BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 272 Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 148/244 (60%) Query: 3 AAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGR 62 + + LS +GL K+F G ++ VDL++ ALIGPNGAGK+++F+L++ + +G Sbjct: 24 SGIVLSARGLGKSFGGFHAVKNVDLDVEHARVHALIGPNGAGKTTVFNLLTKFLQPTSGE 83 Query: 63 VTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGG 122 +TL G IT+ P ++ R GL RSFQI++ FP L+ ENV+ AL G FWR + Sbjct: 84 ITLLGETITKTDPARVARKGLVRSFQISATFPHLTVLENVKVALQRPNGLATQFWRSLSA 143 Query: 123 SHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSR 182 A+A+ +L++VGLA A +LSY +RALE+A T+A D V+LLDEP AGM Sbjct: 144 LDWLDAQAVELLERVGLADARHALAADLSYGRKRALEIATTLALDPKVLLLDEPLAGMGH 203 Query: 183 AESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQ 242 + + ALI +V + +LMVEH+++VV D+A + V+ G ++A + +E V+ Sbjct: 204 EDVHTIAALITDVAKDRAVLMVEHNLKVVADIAHHVTVLQRGEILASGDYATVSKDERVR 263 Query: 243 ALYL 246 Y+ Sbjct: 264 TAYM 267 >AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 141/242 (58%) Query: 5 VALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVT 64 V LS +GL K F ++ VDL++ ALIGPNGAGK+++F+L++ + G +T Sbjct: 22 VVLSARGLTKTFGAFAAVKNVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTGGAIT 81 Query: 65 LHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSH 124 G DIT+ P ++ RLGL RSFQI+++FP L+ ENVR AL FW + Sbjct: 82 FMGTDITKTPPDKVARLGLVRSFQISAVFPHLTVLENVRVALQRPNSLATQFWLPLSSLD 141 Query: 125 EASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAE 184 +ARA ++ VGL + A +LSY +R LE+A T+A D V+LLDEP AGM + Sbjct: 142 RLNARAEELISMVGLTREKNALAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGGED 201 Query: 185 SAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQAL 244 + + LIREV + +LMVEH+++VV D+ + V+ G ++A + A+ V+ Sbjct: 202 VSHVAELIREVAKTRAVLMVEHNLKVVADICHHVTVLQRGEILAEGDYAAVSADPRVRTA 261 Query: 245 YL 246 Y+ Sbjct: 262 YM 263 >SMc03120 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 262 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 140/238 (58%), Gaps = 6/238 (2%) Query: 5 VALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVT 64 V LS +GL + F G ++ VDL++ ALIGPNGAGK+++F+L++ + G +T Sbjct: 14 VVLSARGLRRDFGGFTAVKDVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTHGTIT 73 Query: 65 LHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSH 124 L G DITR +P ++ R+GL RSFQI+++FP L+ +NVR AL FW+ + Sbjct: 74 LLGEDITRTAPDKVARMGLVRSFQISAVFPHLTVLDNVRVALQRPNRLATQFWKSLSSLD 133 Query: 125 EASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAE 184 + +A +++ VGL A+ A +LSY +R LE+A T+A + V+LLDEP AGM + Sbjct: 134 TLNGKAEQLIRSVGLDKEANAVAADLSYGRKRVLEIATTLALEPKVLLLDEPMAGMGHED 193 Query: 185 SAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIA------CDTAPRIR 236 + +IREV + +LMVEH++ VV L + V+ G ++A PR+R Sbjct: 194 VGMVAEIIREVARERAVLMVEHNLSVVATLCHHVTVLQRGEILAEGDYATVSEDPRVR 251 >mll4886 Non COG Length = 241 Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 9/241 (3%) Query: 7 LSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTLH 66 L+ +GL + F G + VD L+ GE A+IGPNGAGK++ +VSGR + +G + Sbjct: 5 LATKGLSRNFGGLRAVDSVDFTLMPGEIRAVIGPNGAGKTTFVSMVSGRIQPSSGAIVFD 64 Query: 67 GVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSHEA 126 G DIT R G+A +FQITS++ LS + NV + TL R G S A Sbjct: 65 GADITSLPAYVRVRQGIAYTFQITSIYANLSVYANVALPVQLTL--------RHGPSKSA 116 Query: 127 -SARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAES 185 A +T L++ GLA RA + AG+LSY QR LE+A+ +A +++LDEPT G++ +E Sbjct: 117 IQAAVMTALERTGLADRAHMPAGQLSYGHQRLLEVAMGLALKPRLLILDEPTQGLADSEI 176 Query: 186 AAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQALY 245 + L+R++ T+L++EH+M VV LADRI V + G+++A T IR N VQ Y Sbjct: 177 DNFIVLVRDIASSATVLLIEHNMPVVMQLADRITVFNAGKILAEGTPEAIRENAAVQEAY 236 Query: 246 L 246 L Sbjct: 237 L 237 >RSc2246 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 138/252 (54%) Query: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 M A LS GL K + G + L G ALIGPNGAGK++ +L++G + A Sbjct: 6 MPPAPTLSTHGLSKRWGGFHANADISLTFAPGAHHALIGPNGAGKTTFINLLTGAFAPTA 65 Query: 61 GRVTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 G+V L G DITR S Q + G+ R+FQI +LFP L+ E+V A+ G + + R + Sbjct: 66 GQVRLDGDDITRLSAHQRVKRGITRTFQINTLFPGLTVLESVMLAIFERTGASWHWHRTV 125 Query: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 A A+ +L ++ L A A L Y +QR LE+A+ +A ++LLDEP AG+ Sbjct: 126 AAHTAARDEAMALLGRLQLGADASSPTHALPYGKQRLLEIALALATLPRILLLDEPAAGI 185 Query: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 ESA + +I + T+L +EHDM +VF A+RI+V+ GRV+ T I A+ Sbjct: 186 PAGESAELFEVIAGLPRDITILFIEHDMNLVFRFAERISVLVAGRVLTEGTPQEIAADPR 245 Query: 241 VQALYLDRRRHG 252 V+ +YL HG Sbjct: 246 VREVYLGEAAHG 257 >SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 254 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 13/250 (5%) Query: 7 LSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTLH 66 L ++ L K F G + V LEL GE LIGPNGAGK++LF+L++G Y G VTL Sbjct: 4 LEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTLD 63 Query: 67 GVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCAL-------LWTLGYRY-AFWR 118 G + +SP +I LGL R+FQ LF L+ +NV A ++T R AF++ Sbjct: 64 GHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRLPAFYK 123 Query: 119 RIGGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTA 178 E A+AL +L+ L A+ A LSY +QR LE+ +A + ++ LDEP A Sbjct: 124 ---SEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRRLEIVRALATEPKILFLDEPAA 180 Query: 179 GMSRAESAAMVALIREVT--MGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIR 236 GM+ E+A + LIR + T++++EHDM +V ++ +RI V++ GR+IA T I+ Sbjct: 181 GMNPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDEIK 240 Query: 237 ANEDVQALYL 246 N+ V YL Sbjct: 241 TNKRVIEAYL 250 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 133/247 (53%), Gaps = 26/247 (10%) Query: 28 ELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTLHGVDITRQSPQQINRLGLARSF 87 E+ GE LIGPNGAGK+++F++++G Y GR+ + +DIT P QI LG+AR+F Sbjct: 33 EIREGELVGLIGPNGAGKTTVFNVITGIYTPTKGRIVFNDIDITGLRPYQITHLGIARTF 92 Query: 88 QITSLFPRLSAFENVRCALLWTLGY------------------RYAFWR---RIG---GS 123 Q LF ++ ENV A L R+ FWR +IG Sbjct: 93 QNIRLFSDMTVLENVLVAQHHVLSNPDADRILVKHGKPRKGHGRFWFWRAVTKIGYLKKE 152 Query: 124 HEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRA 183 E RA ++++VGL A L Y EQR LE+A +A + +ILLDEP AGM+ Sbjct: 153 KEMVERAKDLIKRVGLEKVMYEKASSLPYGEQRKLEIARALATEPKLILLDEPAAGMNPK 212 Query: 184 ESAAMVALIREV--TMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDV 241 E+ ++ I+++ T+L++EHDM+VV + +RI VMD GR+IA T I+ + V Sbjct: 213 ETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERIIVMDYGRIIAEGTPKEIQNDPRV 272 Query: 242 QALYLDR 248 YL R Sbjct: 273 IEAYLGR 279