BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0025.p (258 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04143 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 139 9e-33 SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 136 4e-32 RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia sol... 119 1e-26 BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me... 114 2e-25 SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 113 5e-25 YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis 105 8e-23 AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 102 8e-22 SMb20148 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 102 1e-21 AGl1334 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 99 9e-21 AGpA108 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 96 8e-20 >SMc04143 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 240 Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 126/238 (52%), Gaps = 2/238 (0%) Query: 17 LNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQAL 76 +N L P R ER A+ +Y + I G++ G+KLPSE + F+VSRPVVR+AL Sbjct: 1 MNDVTLKLKPARRERLADVLYGQILEQIASGQMAEGAKLPSEAHICRDFQVSRPVVREAL 60 Query: 77 DRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAA 136 RL+ D LV S +G GT+VK +P A E I + E RL +E ECA +AA Sbjct: 61 MRLQADGLVVSRQGIGTFVKSRPSDKLTSLAASAE--IASYLRAFEPRLALETECAGLAA 118 Query: 137 LRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVS 196 +RR + L+++ L E A G DF FH A+A A GN F ++++ L +S Sbjct: 119 MRRTKAQLNQIGEALAALEGAFARGETGWEEDFAFHHAVAEAAGNELFPRLLEELRDILS 178 Query: 197 HAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRMFNS 254 ++ M L R + ++EHR+I+ I Q+ + AR MR H+ +R R+ S Sbjct: 179 GSMRMALGLTRQGSDDRRRRVLEEHRKIYSAISGQNRDLARLYMRYHLTESRARITGS 236 >SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 243 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 23 GLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLRED 82 L RP +A++VY + H I+ G G++LP+EN+LA F VSRPVVR+AL RLR D Sbjct: 10 SLAEARPSSYADQVYGRILHDILNGIFQPGARLPTENELAERFGVSRPVVREALARLRVD 69 Query: 83 QLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQ 142 LVE+ RGSGTYV +P + P I + ELR +E + AA+AA RR + Sbjct: 70 GLVEARRGSGTYVLSRP--SQDLPNLADLEDISRFLRYQELRFYVEGQAAALAAERRTEK 127 Query: 143 DLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNML 202 L + E F G D FH AI TGN F + ++ E ++ +N+ Sbjct: 128 QLAAILEAHEAFAHEVGRGAFLPESDRRFHLAICEGTGNEFFAKALEGPEVSLTSFMNVS 187 Query: 203 RHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRM 251 L R++ + EH +I E IR +DA AR AM HI NAR RM Sbjct: 188 LALTRSGSQARARRVIAEHAEIVEAIRTKDAVWARVAMETHIINARRRM 236 >RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia solanacearum Length = 255 Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 R + AE V + + I G + G KLP+E++L + VSR VVR+A+ RL+ L+E+ Sbjct: 13 RTQSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGMLGVSRTVVREAISRLQAKALIET 72 Query: 88 LRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRM 147 G G++V E Q GA + + I+ LELR+ +E ECA +AA R +DL + Sbjct: 73 RHGIGSFVLEPRAETAIQLGA--ASTLQDILAMLELRVALETECAGLAAQRATPEDLTGL 130 Query: 148 ERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVM----KTLEYDVSHAVNMLR 203 L+ FE G + D FH AIA AT N FV V+ KTL A + Sbjct: 131 RNALDAFEQDQASGSDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVG 190 Query: 204 HLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRM 251 +L P R+ EHR I+E I QD E AR AMR H+ N+R R+ Sbjct: 191 YLN--TPESRA-TVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERL 235 >BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 270 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 10/226 (4%) Query: 29 PERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESL 88 PE A ++ + I++G +VGSKLPSE +L+ + VSRPVVR+AL +L+ D LVE+ Sbjct: 41 PEEIARQIEKR----ILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEAR 96 Query: 89 RGSGTYVKEKPGLAP--AQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDR 146 GSG +V ++ QP E + + +EL + IE +AA+ R +DL + Sbjct: 97 AGSGVFVIDESNQKAFRIQPLVVEEAQ--SLEQLMELLVAIEVAATRIAAVNRTPEDLKQ 154 Query: 147 MERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLM 206 ++R L G E A + D+ FH+AI AT N F+ + K LEY H + R Sbjct: 155 IKRALIGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVIRQARTNT 214 Query: 207 HIAPWKRSQDAM-DEHRQIFELIRVQDAEGARRAMRGHIDNARTRM 251 + K DA+ DEH+ I+E I + D E A A H+ NA RM Sbjct: 215 R-SNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM 259 >SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 249 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 39/243 (16%) Query: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 R + +ERV + +++G I G KLP+E+ ++ F VSR VVR+A+ L D LVE Sbjct: 7 RKPKLSERVANAIREQVLKGEIQPGQKLPTESRMSEFFGVSRTVVREAIATLAADGLVEP 66 Query: 88 LRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRN------- 140 +G+G +V + P LA + +I H +N +E+R+ +E E A +AALRRN Sbjct: 67 RQGAGVFVMDHPTLAFGSISLDVGNKISHALNVIEVRMGLEIESAGLAALRRNSAQEAQI 126 Query: 141 RQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQV-----MKTLEYDV 195 ++ +RLLE EA + DF FH AIA AT N +V+V ++ + DV Sbjct: 127 QEAFFEFDRLLERGEATGK-------SDFAFHRAIAAATNNPYYVEVLDALGLRAIPCDV 179 Query: 196 SHAVNMLRHLMHIAPW-------KRSQDAMD-EHRQIFELIRVQDAEGARRAMRGHIDNA 247 + +PW + Q+++ EH I + I D E AR AMR H+ + Sbjct: 180 A------------SPWGTESVLSREYQESLQREHLAILKAISESDPEAARAAMRAHLAAS 227 Query: 248 RTR 250 + R Sbjct: 228 QER 230 >YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis Length = 266 Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 8/230 (3%) Query: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 ++ R + V L AIV GR +VG +LP E D+A F VSR VVR+AL L ++LVE Sbjct: 17 IKVMRLYQEVGSQLREAIVSGRYSVGDRLPPERDIAENFSVSRSVVREALIMLELEKLVE 76 Query: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLEL---RLVIEPECAAMAALRRNRQD 143 +GSG YV P ++ E T I EL R ++E E AA AA++ + D Sbjct: 77 VRKGSGVYVVNVPTMS---LNGESATSIDSGYGPFELLQARQLLESEVAAFAAMQATKAD 133 Query: 144 LDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQ-VMKTLEYDVSHAVNML 202 + +M +E +AA G I D FH +A +T N V +T + S A+ Sbjct: 134 IIKMRNAIEQGKAALTAGAIDESADELFHCLLAQSTQNSVLANMVAQTWQVRKSSAMWQG 193 Query: 203 RHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRMF 252 H H A + +D+H++I + + +D++ A++AM H++N + ++ Sbjct: 194 AH-SHTADFSYRWQWLDDHQKILQAVLRRDSKAAKQAMWQHLENVKLKLL 242 >AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 13/223 (5%) Query: 35 RVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSGTY 94 +V E L I +GR G +LPSE + F VSR VVR+A+ LR D LVE +G+G + Sbjct: 20 KVSEELRSQIAKGRYKTGDRLPSEAQMTQEFGVSRTVVREAVASLRSDGLVEPRQGAGVF 79 Query: 95 VKEKPGLAPAQPGAEPE-TRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLLEG 153 V E P +P + R+ ++ LELR +E + A +AA+RR+ +++ + Sbjct: 80 VLE-PAPVERRPFHNVDLARVSSLIEMLELRTAVEGDAAGLAAIRRSPAQEEKIIEAFDA 138 Query: 154 FEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDV----SHAVNMLRHLMHIA 209 F A+ G DF FH A+A AT N RF + ++ L V + A N ++ A Sbjct: 139 FRASAARGMPTAEADFAFHIAVAEATNNPRFSEFLQVLGPTVIPRRAVAENGAETVLSPA 198 Query: 210 PWKRSQDAMDEHRQIFELIRVQDA--EGARRAMRGHIDNARTR 250 R + EH I LI +QD + AR AMR H+ +++TR Sbjct: 199 DLSR---LVGEHEAI--LIAIQDGNEDAARSAMRSHLKSSQTR 236 >SMb20148 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 233 Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 112/221 (50%), Gaps = 11/221 (4%) Query: 36 VYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSGTYV 95 V+E + AI G +LP+E++LAT FEVSRP+VR+AL RLR+ L+ S RG+G++V Sbjct: 16 VFERMHRAIKSGAYKPDERLPTEHELATEFEVSRPIVREALKRLRDQGLIYSRRGAGSFV 75 Query: 96 KEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLLEGFE 155 + GL + E + ++N E RL +EP AA AALR + L + R LE Sbjct: 76 R-AVGLREPLGFGQLEN-VADLLNCYEFRLTLEPAAAAAAALRHDETSLASIRRALELLR 133 Query: 156 AANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQ 215 A DF FH AIA A N F M+ L+ + AV M H + + KR Sbjct: 134 DATNRQSHREDADFQFHLAIARAAQNSYFSTAMEALKEHI--AVGMKFHGISV---KREA 188 Query: 216 DAMD----EHRQIFELIRVQDAEGARRAMRGHIDNARTRMF 252 + EH I + I AE AR M H+ +R R+F Sbjct: 189 SGLSRVFAEHEAIADAIAAGSAEEARMLMLKHLTGSRDRLF 229 >AGl1334 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 224 Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 36 VYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSGTYV 95 +YE + I +GR + +LPSE LA++ SRPVVR+AL+RLR D L+ S +GSG+YV Sbjct: 1 MYEKIVGMISDGRFPLNERLPSEQSLASMLGASRPVVREALERLRNDGLIVSQKGSGSYV 60 Query: 96 KEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLLEGFE 155 +++P + Q P + + E R +E A +AA D R+E+ L E Sbjct: 61 RQQPDSSVLQ--QVPVGSLADVQRFFEFRSGLEASAAELAARNWQPADRSRIEQALAALE 118 Query: 156 AANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQ 215 G + DF H+AIA A+ N + V + + ++ R L + + Sbjct: 119 LCLERGDLGAEEDFALHDAIARASHNQFHITVRTWFKPHFAIGQSVTRSLSLKRTPQHVR 178 Query: 216 DAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRMFNSRPG 257 D +EH I E + + + A AM+ HI AR RMF G Sbjct: 179 DVQNEHTAIVEAVFERREQAAHDAMKDHILKARARMFKGVGG 220 >AGpA108 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 13/228 (5%) Query: 32 FAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGS 91 A+ V+E + AI G +LP+E++LA FEVSRPV+R+AL RLR+ L+ S RG+ Sbjct: 12 LADIVFERMLRAIKSGAYNPDERLPTEHELAAEFEVSRPVIREALKRLRDQGLIYSRRGA 71 Query: 92 GTYVKEKPGLAPAQP-GAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERL 150 G++V+ + QP G + ++N E RL +EP AA AA R + L + + Sbjct: 72 GSFVR---SVGLRQPLGFGQLENVADLLNCYEFRLTLEPAAAAAAATRHDADSLKAIRQA 128 Query: 151 LEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAP 210 LE A DF FH AIA A N F M+ L+ + AV M H A Sbjct: 129 LELLRDATNRQSHREDADFQFHLAIARAAQNTYFSTAMEALKDHI--AVGM---KFHGAS 183 Query: 211 WKRSQDAMD----EHRQIFELIRVQDAEGARRAMRGHIDNARTRMFNS 254 +R + EH I + I + ARR M H+ +R R+F + Sbjct: 184 IRREATGLTRVFAEHEAIAKAIADGQEDDARRLMFEHLQESRGRLFQA 231