BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0022.p (395 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3960 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58... 128 3e-29 CAC0818 [T] COG2199 FOG Cac Clostridium acetobutylicum 119 1e-26 PA0290_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa 115 2e-25 PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa 114 6e-25 PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa 113 1e-24 AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58... 110 4e-24 PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 110 4e-24 DR2498 [T] COG2199 FOG Dra Deinococcus radiodurans 110 6e-24 lin2025 [T] COG2199 FOG Lin Listeria innocua 110 6e-24 SMc01370 [T] COG3706 Response regulator containing a CheY-like r... 108 1e-23 >AGc3960 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 400 Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 124/259 (47%), Gaps = 31/259 (11%) Query: 140 FARGMSGPHAQRYARWSFGRCIGIVSLLIFISTHVARFILSFSHPELFIPPAMSNIGVAL 199 FAR P R A + G++SL + S LF A N+ A Sbjct: 166 FARWRKEPLLSRLALGAITGVSGLISLAVMKSV-------------LFPGYASINLVTAF 212 Query: 200 IYLIPLSGSLLFSVSL--MMIYFERLLADRQRLATEDQLTGALNRRELVRCGELLLARAV 257 ++I L+ F++SL MM+ ER LA D LTG NRR + Sbjct: 213 FFIIMLN----FAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQ------TMPA 262 Query: 258 ERKSVLALAFIDVDHFKQINDRHGHLAGDRVLAGIGATLAQSCRPGDVLGRYGGEEFCAV 317 A +D+DHFK INDR GH GD VL + ++ S R GDVL RYGGEEF Sbjct: 263 APDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFIIF 322 Query: 318 FPGVDHDQACQIGQRLLESVRTQRFEHGH---PVTISVGLAVLQPGNQR-SWDELVHEAD 373 PG D+AC IG+R+ ++V + G VTIS+G+A G+ R L +AD Sbjct: 323 LPGAGVDKACMIGERIRDAVAINEVDCGGLRVGVTISIGVA--TTGDMRCDLQMLAEKAD 380 Query: 374 LALYRAKNEGRNAYRMAMS 392 ALYRAK EGRN R A++ Sbjct: 381 RALYRAKTEGRNCVREALA 399 >CAC0818 [T] COG2199 FOG Cac Clostridium acetobutylicum Length = 571 Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 231 ATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDRVLA 290 + +D LTG NR + + ++ + K + + +D+D+FK IND++GHL GD VL+ Sbjct: 416 SIKDNLTGMYNRNHIEEILDKEISDYIRYKKLFTILMMDIDYFKSINDKYGHLVGDNVLS 475 Query: 291 GIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEHGHPVTI 350 + + ++ R D +GRYGGEEF VFP D +A I +R+ + FE+G VTI Sbjct: 476 VVSNAIIRNLRKEDFVGRYGGEEFIVVFPNTDKKEAFIIAERIRTDIENLLFENGIRVTI 535 Query: 351 SVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRNAYRM 389 S G+ + S +H AD LY AK GRN +M Sbjct: 536 SGGIY---ENSSFSKKVCIHNADRLLYYAKESGRNRIKM 571 >PA0290_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 184 Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 228 QRLATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDR 287 QRLAT D LT + NRR E LA +DVD FK+INDR GH GD+ Sbjct: 20 QRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGDQ 79 Query: 288 VLAGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRF---EH 344 VL I + + + R GD+ GR GGEEF + PG D A QIG+RL V+ RF EH Sbjct: 80 VLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQRLRFQEGEH 139 Query: 345 GHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRN 385 +T+S GL VLQ ++ L AD A+Y AK +G++ Sbjct: 140 SFGITVSQGLTVLQADDE-GLGALYSRADAAMYSAKRQGKD 179 >PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 525 Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 90/160 (56%), Gaps = 5/160 (3%) Query: 230 LATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDRVL 289 LA+ D LTG NR + EL+L A + +D+DHFK IND HGHL GDR L Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419 Query: 290 AGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEH--GHP 347 + TL Q R D+LGR GGEEF A+ P V DQA + +RL V R + G P Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 479 Query: 348 --VTISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRN 385 +T+S+G+A+ + + L+ AD ALY+AK+ GRN Sbjct: 480 LRMTVSIGVALRRDAGD-DLESLLVRADSALYQAKSGGRN 518 >PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 487 Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 92/166 (55%), Gaps = 17/166 (10%) Query: 228 QRLATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDR 287 + L D+LTG NRR +R L + + LA ID+DHFK+INDRHGH AGDR Sbjct: 320 EDLVATDELTGLFNRRHFMRMASRALEDLLPNRQ-HGLALIDLDHFKRINDRHGHAAGDR 378 Query: 288 VLAGIGATLAQSC-RPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEHGH 346 VL A +A+SC R GDVL RYGGEEF + P D +Q +RL + F+ Sbjct: 379 VLQTFAA-VARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLA-----FQQAE 432 Query: 347 PV-------TISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRN 385 PV ++SVG+ +L + DE + AD ALYRAK GRN Sbjct: 433 PVGVTVDTLSLSVGMTLLYADD--DLDEALQRADQALYRAKRGGRN 476 >AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 579 Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 4/168 (2%) Query: 221 ERLLADRQRLATE-DQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDR 279 +R L+++ R +E D LTG NRR L + +L+ + +S L + ID+DHFK INDR Sbjct: 400 QRALSEQLRTLSETDALTGVFNRRALEKSVRAILSGDEDYQS-LGVMIIDIDHFKSINDR 458 Query: 280 HGHLAGDRVLAGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRT 339 +GH GD L + L + R D+L RYGGEEF V V H A RL + Sbjct: 459 YGHAMGDLALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEV 518 Query: 340 QRFEH--GHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRN 385 Q F+ G +T S G+ + SWDEL+ AD LY AK GRN Sbjct: 519 QTFDEQTGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRN 566 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Pae Pseudomonas aeruginosa Length = 347 Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 228 QRLATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDR 287 QRL D LTG NRR E+ R++ +S L+L IDVD+FK ND GH+AGD Sbjct: 168 QRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDE 227 Query: 288 VLAGIGATLAQSC-RPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEHGH 346 L + + + C R D+ RYGGEEF V PG A + +++ +V + + H Sbjct: 228 ALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQ 287 Query: 347 P-----VTISVGLAVLQP-GNQRSWDELVHEADLALYRAKNEGRN 385 P +T+S+G++ L P G +++ L+ AD ALY+AKN GRN Sbjct: 288 PRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRN 332 >DR2498 [T] COG2199 FOG Dra Deinococcus radiodurans Length = 356 Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 9/180 (5%) Query: 215 LMMIYFERLLADRQRLATE------DQLTGALNRRELVRCGELLLARAVERKSVLALAFI 268 L+ + ER L+ ++ + E D LTG R L + L A S L++ Sbjct: 180 LIAGFIERYLSIHEQTSGELQAARLDALTGVAGRAALESELQRALDTARRTNSPLSVILA 239 Query: 269 DVDHFKQINDRHGHLAGDRVLAGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHDQACQ 328 D+DHFKQ+ND HGH AGD VL L ++ ++GR+GGEEF AV PGV D A Sbjct: 240 DIDHFKQVNDVHGHGAGDDVLRAFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALA 299 Query: 329 IGQRLLESVRTQRFEHGHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRNAYR 388 + +RL ++V G PVT S G+A L+P + ++L AD LY AKN GRN R Sbjct: 300 LAERLRQAVSDTEIA-GLPVTASFGVAALRPDDD--LNQLFSRADERLYDAKNGGRNTVR 356 >lin2025 [T] COG2199 FOG Lin Listeria innocua Length = 379 Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 4/169 (2%) Query: 221 ERLLADRQRLATEDQLTGALNRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRH 280 +L+ + Q+ D LTG N R + E A +KS L+L ID+D+FK++ND + Sbjct: 199 NKLIYELQQSTILDPLTGLTNFRHFEKTFEAAFHYATLKKSNLSLIIIDIDYFKRVNDTY 258 Query: 281 GHLAGDRVLAGIGATLAQ-SCRPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRL---LES 336 GHL G+ VL+ L + S P V+ R GGEEF + P ++ + + +++ +E Sbjct: 259 GHLVGNGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEK 318 Query: 337 VRTQRFEHGHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNEGRN 385 + G +TIS G+A N + +EL+H AD ALY AK GRN Sbjct: 319 IDVPIATTGSVITISAGIANYDGKNYPNANELMHAADQALYNAKRNGRN 367 >SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Sme Sinorhizobium meliloti Length = 455 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 108/204 (52%), Gaps = 13/204 (6%) Query: 194 NIGVALIYLIPLSGSLLFSVSLMMIY----FERLLADRQR---LATEDQLTGALNRRELV 246 +GV + P+ + L + SL I +RL A Q+ LA D LTG NRR L Sbjct: 246 ELGVTDYIMRPVDPNELVARSLTQIRRKHCNDRLRASVQQTIELAVTDDLTGLHNRRYLE 305 Query: 247 RCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDRVLAGIGATLAQSCRPGDVL 306 +LL+ RA R L++ D+D FK++ND HGH AGD VL + + R D+ Sbjct: 306 NHLKLLIDRATTRGRPLSICITDIDRFKRVNDTHGHDAGDDVLREFANRVRATVRGADLA 365 Query: 307 GRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEHGHP-----VTISVGLAVLQPGN 361 R+GGEEF V P + A + +RL +V ++ F+ VT S+G+A L+P Sbjct: 366 CRFGGEEFVVVMPDTTPEMAAIVAERLRLAVESRGFDIPQAATVLNVTASLGIATLRPHG 425 Query: 362 QRSWDELVHEADLALYRAKNEGRN 385 + + L+ AD+ALY+AKN GRN Sbjct: 426 D-TAEALLKRADMALYQAKNGGRN 448