BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0002.p (856 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc03959_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobiu... 447 e-125 AGl502_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium ... 443 e-124 PA2138_1 [L] COG1793 ATP-dependent DNA ligase Pae Pseudomonas ae... 422 e-117 AGpA74_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium ... 407 e-113 mll4606_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium... 391 e-108 mll9625_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium... 384 e-106 SMb20685_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobiu... 362 1e-99 mll2077_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium... 342 3e-93 SMa0414 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobium m... 335 3e-91 Rv0938_2 [L] COG1793 ATP-dependent DNA ligase Mtu Mycobacterium ... 273 2e-72 >SMc03959_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobium meliloti Length = 576 Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust. Identities = 247/568 (43%), Positives = 327/568 (57%), Gaps = 39/568 (6%) Query: 6 LDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWA 65 L Y +RDFT T EP G +R + + ++F +Q+H A RLHYDFRLE +GVLKSWA Sbjct: 8 LSEYNRRRDFTRTSEPKGAVARRSGDNR---MRFLVQKHAATRLHYDFRLEWEGVLKSWA 64 Query: 66 VPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGL 125 V +GPSL+P DKRLAVR EDHP YG FEG IP +YG G V+LWD G W P D L Sbjct: 65 VTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDPSKAL 124 Query: 126 AKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITE-----L 180 KG LSF+L G +++G WALVRM + +ENWLL+K+ D A+ ++ I E + Sbjct: 125 KKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDDVASDDGESLINENITSIV 184 Query: 181 RPESVKDLGDQAPPVKAR----------------------ASAKAAPDSTGPMPAQMQAQ 218 +++++ + +AR A +A ++G +PA Q Sbjct: 185 TGRTMEEIAEGRGEKRARVWHSNKSISANLKAGAIAENGNAGKRATRKASGKLPAFKAPQ 244 Query: 219 LATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPV 278 LATLV + PAG+ WL E KFDGYR +C + G YTR GLDW+ ++P +A ALA L Sbjct: 245 LATLVTKVPAGDAWLNEAKFDGYRLVCAVGAGTVRCYTRNGLDWTEKFPAIAAALAELDC 304 Query: 279 DEAWIDGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLR 338 A IDGEVVAL ++G +F ALQ R G LYAFDL+ L+G DL PL Sbjct: 305 QSALIDGEVVAL-SEGGSTFSALQKALR------TGASTRLYAFDLIELDGKDLSRKPLV 357 Query: 339 QRKELLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRY 398 +RKE L L+ + +SEH+ G+ V C+ G EGI+ K ADAPY R R Sbjct: 358 ERKERLEALLQTLGATSTVQFSEHVRGNGEHVLSAICKAGQEGIIAKEADAPYRSGRSRS 417 Query: 399 WLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLL 458 WLK+KC RQEFVI GYT + + F ++LVG + E +L Y G VGTGF K +E L Sbjct: 418 WLKVKCTKRQEFVIGGYTPSSKKGRAFASLLVGTF-EGGKLIYRGGVGTGFSGKTMEDLA 476 Query: 459 KQFGPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKD 518 F ++D F + P + R V WL P LVAEV FA++T+ G +RHGSF LREDK+ Sbjct: 477 AAFAKRKRDTSPFDSVPRERMRNSV-WLEPDLVAEVDFAEFTADGHVRHGSFEGLREDKE 535 Query: 519 PHQIRREGPQPLAEAKADAKAPAAAPAR 546 ++ E P+P AK+ ++A R Sbjct: 536 ARAVKLETPKPAEAEPETAKSKSSARTR 563 >AGl502_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 546 Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/560 (45%), Positives = 317/560 (56%), Gaps = 41/560 (7%) Query: 6 LDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWA 65 L Y AKR F TPEP G ++AE S F IQ+H ARRLHYDFRLE+DGVLKSWA Sbjct: 3 LQTYNAKRSFDKTPEPKG----TKAEKPGSS--FVIQKHDARRLHYDFRLEMDGVLKSWA 56 Query: 66 VPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGL 125 V +GPSLDP DKRLAV VEDHP YG FEG IP QYG G V++WDRG W+P GDA G Sbjct: 57 VTRGPSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDAGKGY 116 Query: 126 AKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESV 185 KGHL FELEGEKL+GRW LVRM + +ENWLLIK DD A A I E RPESV Sbjct: 117 RKGHLEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESV 176 Query: 186 K-------------DLGDQAPPVKARASAKAAPDSTGPMPAQMQAQ---------LATLV 223 K D + P K ++ + +P + Q LATL Sbjct: 177 KTGRSVEEVAKKPEDTWNSKPVSKKAGASTSGQKQAHALPKGARKQALPSFVPPALATLK 236 Query: 224 DRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEA-W 282 + P G +WL E+KFDGYR R+D G+ + TR GLDW+ ++ A E Sbjct: 237 PKPPEGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGAAVAAALTALPAETVL 296 Query: 283 IDGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKE 342 IDGE+V G F ALQ D + R YAFDLLYL+G DLR L +RK Sbjct: 297 IDGEIVVERDSGASDFSALQQ----DLSEGRDDRFVFYAFDLLYLDGSDLRGAALSERKA 352 Query: 343 LLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKL 402 LL +L+P DP L YS+H E A V HAC+ +EG++ K + Y R W+K Sbjct: 353 LLEKLLPAGDPH--LRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKS 410 Query: 403 KCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFG 462 KC RQEFVI GYT + G++ +GVY E+ +LR+ GRVGTG+ + E + + Sbjct: 411 KCSMRQEFVIGGYTVSSTSEHAIGSLALGVY-ENGKLRHVGRVGTGYSGDVAEMIFSRLK 469 Query: 463 PLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQI 522 PLE+ F + T RR +H+++P LVAEV F W+ G LRH SF LREDK +I Sbjct: 470 PLERKDSPFGDKLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEI 529 Query: 523 RREGPQPLAEAKADAKAPAA 542 RE +A +D+ AP + Sbjct: 530 ERE-----EKAVSDSNAPQS 544 >PA2138_1 [L] COG1793 ATP-dependent DNA ligase Pae Pseudomonas aeruginosa Length = 548 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/557 (45%), Positives = 327/557 (58%), Gaps = 25/557 (4%) Query: 2 STGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVL 61 S+ L Y KRDF TPEPSG R + + L++ +Q+H A RLHYDFRLELDG L Sbjct: 3 SSKPLAEYARKRDFRQTPEPSGRKPRKDS---TGLLRYCVQKHDASRLHYDFRLELDGTL 59 Query: 62 KSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDA 121 KSWAVPKGP LDP KRLAV+VEDHP DY FEG IP YGAG V++WDRG W P D Sbjct: 60 KSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDP 119 Query: 122 RAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKEN-WLLIKDDDAAAASGEQAAITEL 180 R GL KGHLSF L+GEKL GRW L+R GK++ W L+K D A S ++ + + Sbjct: 120 REGLEKGHLSFALDGEKLSGRWHLIRTN---LRGKQSQWFLVKAKDGEARSLDRFDVLKE 176 Query: 181 RPESVKDLGDQAPPVKARASAKAAPDSTG------PMPAQMQAQLATLVDRAPAGEQWLC 234 RP+SV P A+ A P G PMP + +LA+LV++ P GE W Sbjct: 177 RPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEWIAPELASLVEQPPRGE-WAY 235 Query: 235 ELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQG 294 ELK DGYR + RI+ G + TR G DW+ R P L +ALA L + +W+DGE+V LD +G Sbjct: 236 ELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEG 295 Query: 295 QISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPE 354 + F+ALQN ++ G + FDL Y G DLR++ L +R+ L L+ G D E Sbjct: 296 RPDFQALQNAF----EEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRD-E 350 Query: 355 GLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAG 414 L +S + ++ AC+ G+EG++ KR + Y RR W+KLKC+ RQEFVI G Sbjct: 351 DPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKCQLRQEFVIVG 410 Query: 415 YTEPAGQRSGFGAILVGVY--DEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFA 472 YTEP G R GA+L+G+Y DE +LRYAG+VG+GF L+ + ++ PL A Sbjct: 411 YTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLA 470 Query: 473 NPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQI---RREGPQP 529 P ++ V W+RP + EV +AQ T GI+R F LREDK ++ R GP P Sbjct: 471 KVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIRQAVFHGLREDKPAREVTGERPAGPPP 530 Query: 530 LAEA-KADAKAPAAAPA 545 L A KA A A AA A Sbjct: 531 LRGARKASAGASRAATA 547 >AGpA74_1 [L] COG1793 ATP-dependent DNA ligase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 619 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/579 (42%), Positives = 327/579 (56%), Gaps = 59/579 (10%) Query: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 M++ KL Y+ KRDF T EPSG A++ +A S +F IQ+H A RLHYD RLELDGV Sbjct: 58 MASDKLSTYKQKRDFQKTQEPSG-AAKLKA---SNRRRFVIQKHDATRLHYDLRLELDGV 113 Query: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 KSWAV KGPSLDPHDKRLAV VEDHP DYG FEG IP QYG G V+LWDRG W P G+ Sbjct: 114 FKSWAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGN 173 Query: 121 A--RAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKE-NWLLIK-------------- 163 LAKG F LEGE+L G + LVRM GK NWLLIK Sbjct: 174 KTPEQALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAV 233 Query: 164 --DDDAAAASGEQA-AITELRPESVKDLGDQAPPVKA--------------RAS---AKA 203 ++D + ASG AI + K Q+ V+A RAS AK Sbjct: 234 LDENDTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKR 293 Query: 204 APDSTGP----MPAQMQAQLATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREG 259 P P MP + QL +DR P+ + W+ E+KFDGYR RI++G+ + TR+G Sbjct: 294 KPALKKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKG 353 Query: 260 LDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQISFEALQN-LARGDRQQADGIRLA 318 LDW+ ++P +A + A LP +A IDGE+ ALD G F ALQ L+ G + L Sbjct: 354 LDWTAKYPAIATSAANLP--DAIIDGEICALDENGAPDFAALQAALSEGKTDE-----LV 406 Query: 319 LYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHG 378 +AFDLL+ DLR++PL +RKE L+ L+ + + L + EH E V + AC+ Sbjct: 407 YFAFDLLFEENEDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLS 466 Query: 379 MEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQ 438 +EGIV K+ADAPY R W K KC E VI Y + G+ F ++LVGV+ + + Sbjct: 467 LEGIVSKQADAPYQSGRTETWAKSKCRAGHEVVIGAYAKTNGK---FRSLLVGVF-KGDH 522 Query: 439 LRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQ 498 Y GRVGTG+ K ++T+L + LE + F ++ V W++P LVAE++FA Sbjct: 523 FVYVGRVGTGYGAKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAG 582 Query: 499 WTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKADA 537 WT+ G++R +F LREDK H++ E +P + AK D Sbjct: 583 WTADGLVRQAAFKGLREDKPAHEV--EAEKPASPAKTDT 619 >mll4606_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti Length = 547 Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust. Identities = 238/540 (44%), Positives = 301/540 (55%), Gaps = 31/540 (5%) Query: 6 LDRYRAKRDFTITPEPSGHASRS-RAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSW 64 L++Y KRDF T EP+G +R+ + EA F I +H A RLHYD RLE DGVL SW Sbjct: 4 LEQYHTKRDFKKTSEPAGKVARTGKNEAGGI---FVIHKHAATRLHYDLRLEHDGVLWSW 60 Query: 65 AVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAG 124 AV +GPSLDPH+KRLAV VEDHP DY FEG IP +YG G V++WD G W P D Sbjct: 61 AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWMPETDPAKA 120 Query: 125 LAKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPES 184 + KGH+SFEL G KL G W LVR+ A + ++NWLLIK DDAAA GE I + RPES Sbjct: 121 MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGED--ILKERPES 178 Query: 185 VKDLGDQAPPVKARASAKAAPDSTGPMPAQ-------------MQAQLATLVDRAPAGEQ 231 VK + +A+ P+ ++ QLATL AP G+ Sbjct: 179 VKSGLTIEEVGEGKAAKGRKPEVWHSNKPAAGKAKAAARKLDFIEPQLATLERDAPPGKD 238 Query: 232 WLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRW--PILAQALARLPVDEAWIDGEVVA 289 WL E+KFDGYR I + TR GLDW+ ++ I+A+ LA L +A IDGE+V Sbjct: 239 WLHEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAE-LAGLKCSDAIIDGEIVV 297 Query: 290 LDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIP 349 L G SF LQ R R Y FDL+ L+G DLR PL +RK+ L+EL+ Sbjct: 298 LADSGVSSFALLQQDLSAKRAN----RFLYYVFDLMRLDGKDLRAEPLVERKQALQELLG 353 Query: 350 GSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQE 409 + +S+H + HAC+ G+EG+V KRADAPY R W+K KC RQE Sbjct: 354 KQAENPAVRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQE 413 Query: 410 FVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQP 469 FVI GY G ++LVG Y E +L+YAGRVGTGF K L + L+ Sbjct: 414 FVIGGYLPSDKTGRGLRSLLVGYY-EGGKLQYAGRVGTGFSVKGATELKTRLDALQAKAS 472 Query: 470 AFANP-PTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQ 528 F P G +G+ W++P LV EV F WTS I+RH SF LREDK + +E P+ Sbjct: 473 PFDKAVPKG---KGLVWVKPELVGEVEFRSWTSDRIVRHASFQGLREDKPAEDVVQEKPK 529 >mll9625_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti Length = 584 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/597 (41%), Positives = 309/597 (51%), Gaps = 65/597 (10%) Query: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 M++ KL Y+AKRDF T EPSG S S +F IQ+H A RLHYD RLEL GV Sbjct: 1 MASDKLTTYKAKRDFKKTQEPSGQGSVK----PSNRRRFVIQKHDATRLHYDLRLELGGV 56 Query: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 KSWAV +GPSLDPHDKRLAV VEDHP DYG FEG IP QYG G V+LWDRG W P G Sbjct: 57 FKSWAVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGK 116 Query: 121 A--RAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKE-NWLLIKDDDAAAASGEQAAI 177 LAKG F LEGE+L G + LVRM GK NWLLIK D A AAI Sbjct: 117 NSPEQALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLIKHRDEYAVETNGAAI 176 Query: 178 TELRPESVKDLGDQAPPVKA--------------RASAKAAPDSTGPMPAQ--------- 214 + SV G + + A +A A A DS + AQ Sbjct: 177 LDKNDTSVAS-GRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAK 235 Query: 215 ---------------MQAQLATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREG 259 + QL + R P+ WL E+KFDGYR R+ G+A + TR+G Sbjct: 236 RKKHGTVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKG 295 Query: 260 LDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQISFEALQN-LARGDRQQADGIRLA 318 LDW+ R+ +A+A LP +A IDGE+ ALD G F ALQ LA G L Sbjct: 296 LDWTARYRAIARAAGNLP--DAIIDGEICALDENGAPDFAALQAALAEGKTDA-----LV 348 Query: 319 LYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHG 378 +AFDLL+ DLR +PL +RK LR+ + + + + + EH E V R AC+ Sbjct: 349 YFAFDLLFEGAEDLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVLRSACRLS 408 Query: 379 MEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQ 438 +EGIV KRADAPY R W K KC E VI Y G+ F ++LVGVY + Sbjct: 409 LEGIVSKRADAPYVSGRTETWAKSKCRAGHEVVIGAYATTNGK---FRSLLVGVY-RGDH 464 Query: 439 LRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQ 498 Y GRVGTG+ + LL + + F + GV WL+P LVAE+ FA Sbjct: 465 FVYVGRVGTGYGAAKVRDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAG 524 Query: 499 WTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP-----AAAPARSPGK 550 WTS G++R +F LREDK ++ E +P + K P AA P+RS GK Sbjct: 525 WTSDGLVRQAAFKGLREDKPAEEV--EADKPASPEKTKVPQPREPTAAAKPSRSRGK 579 >SMb20685_1 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobium meliloti Length = 521 Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 215/534 (40%), Positives = 291/534 (54%), Gaps = 40/534 (7%) Query: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 M+T KL+ YR KRDF+ TPEP G+ + + +F + +HHA HYD RLE+DGV Sbjct: 1 MATPKLEAYRKKRDFSKTPEPVGNLT-------AGGNRFVVHKHHATADHYDLRLEVDGV 53 Query: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 LKSWAVPKGPSL+P DKRLAV EDHP DY FEG IP +YG G +++WD+G W P GD Sbjct: 54 LKSWAVPKGPSLNPADKRLAVETEDHPLDYIDFEGVIPEGEYGGGPMIVWDKGVWAPMGD 113 Query: 121 ARAGLAKGHLSFELEGEKLQGRWALVRMG-KPAADGKENWLLIKDDDAAAASGEQAAITE 179 L KG F L GEKL G W L R+ +P + + NWLL K+ D AA + I Sbjct: 114 VDDDLRKGAFKFRLAGEKLNGGWMLARLKRRPGEEDQRNWLLFKERDPAADT--SIDILA 171 Query: 180 LRPESVKDLGDQAPPVKARASAKAAPDSTGP----------MPAQMQAQLATLVDRAPAG 229 RPESVK G + + + A P P P +++ QLAT P Sbjct: 172 ARPESVKS-GRRIEELVEKPKAPPKPVKLNPGALAGAVKAAQPERIEPQLATQTILPPEA 230 Query: 230 EQ-------WLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAW 282 E+ WL E+KFDGYR + + G+ + TR GLDW+ R+ L + RLP + Sbjct: 231 EKDSKKPERWLHEIKFDGYRTMAHVADGKVRLVTRGGLDWTKRYGDLPEVFRRLPCRDVI 290 Query: 283 IDGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKE 342 IDGE+V LD G F LQ+ G L YAFDLL+LNG +L ++PL +RK Sbjct: 291 IDGEIVVLDETGVSRFALLQDAL----STGAGNSLVFYAFDLLHLNGWNLFDVPLEKRKA 346 Query: 343 LLRELIPGS-DPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLK 401 LL++L+ G + +S+H+ G ++ A + G+EGIV KR APY R + W K Sbjct: 347 LLKQLLAGQVSSRSAIQFSDHVLGEGRALYDRASEMGLEGIVSKRISAPYRSGRSKTWTK 406 Query: 402 LKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQF 461 K ++FVI GYT G ++ +G + + E L Y G+VGTGFD ++L+ LL + Sbjct: 407 TKALKAEDFVIVGYTVSEAA-EGIASLALGEWADGE-LEYRGKVGTGFDAQMLKELLARL 464 Query: 462 GPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALRE 515 PL P R + W+RP L A + + T+ +LRH F LR+ Sbjct: 465 EPLRAGAAKLEGAP-----REIIWVRPLLRAHIHYGNRTTDNVLRHAVFKGLRD 513 >mll2077_1 [L] COG1793 ATP-dependent DNA ligase Mlo Mesorhizobium loti Length = 540 Score = 342 bits (876), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 227/538 (42%), Positives = 296/538 (55%), Gaps = 46/538 (8%) Query: 5 KLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSW 64 KL YRAKR+F+ TPEP+G +F + +HHA HYD RL++ VLKSW Sbjct: 6 KLKTYRAKREFSKTPEPAG------GLISGDGNRFVVHKHHATADHYDLRLQVGDVLKSW 59 Query: 65 AVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAG 124 AVP+GPSL+P DKRLAV EDHP +Y FEG IP +YG G +++WD G W P D Sbjct: 60 AVPRGPSLNPADKRLAVETEDHPLEYIDFEGVIPEGEYGGGPMIVWDTGTWAPMDDVEKS 119 Query: 125 LAKGHLSFELEGEKLQGRWALVRMG-KPAAD-GKENWLLIKDDDAAAASGEQAAITELRP 182 L G F L GEKL G W L R+ KP D K+NWLL K+ D AA + I E RP Sbjct: 120 LRTGAFKFRLAGEKLNGGWMLTRLKPKPGEDENKKNWLLFKERDLAADTALD--ILEARP 177 Query: 183 ESVKD---LGDQAPPVKARASAKAAPDSTGP--MPAQMQA--------QLATLVDRAPAG 229 ESVK + + A K A + P S P +P ++A QLAT R P G Sbjct: 178 ESVKSGLLIEELAAAAKPAARSAPKPGSLKPGELPGAVKAPALSRIEPQLATQALRPPGG 237 Query: 230 EQ--------WLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEA 281 E WL E+KFDGYR + + GQ + TR G+DW+ R+ L A A+LP EA Sbjct: 238 EGPAENTNELWLHEIKFDGYRTMAHLSDGQVRLITRGGIDWTKRYGDLPHAFAKLPCREA 297 Query: 282 WIDGEVVALDAQGQISFEALQN-LARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQR 340 IDGE+V LDA+G F LQ+ LA G G +L YAFDLL+L+G DL + PL +R Sbjct: 298 IIDGEIVVLDAKGISRFALLQDALAEG-----AGSKLHFYAFDLLHLDGWDLLKAPLIRR 352 Query: 341 KELLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWL 400 K LL EL+ G + +S+H+EG ++ A + G+EG++ KRA A Y R + W Sbjct: 353 KALLAELLGGLGANSAIQFSDHVEGSGQGLYDQATELGLEGVISKRASAIYQSGRTKSWT 412 Query: 401 KLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQ 460 K K + +FVIAGYT + G A+ + ++E E L Y G+VGTGFD LL + Sbjct: 413 KCKALQKDDFVIAGYT-ISDAAEGLAALGMAEWEEGE-LHYRGKVGTGFDAATAADLLAR 470 Query: 461 FGPLEQDQPAFANPPTGQQR---RGVHWLRPALVAEVRFAQWTSTGILRHGSFVALRE 515 PL A P G R R +HW++P A + +A T+ LRHG F LR+ Sbjct: 471 LEPLTSG----ATAPEGVPREIMREMHWVKPLFSARIHYANRTADNALRHGVFRGLRD 524 >SMa0414 [L] COG1793 ATP-dependent DNA ligase Sme Sinorhizobium meliloti Length = 556 Score = 335 bits (859), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 225/583 (38%), Positives = 286/583 (49%), Gaps = 75/583 (12%) Query: 5 KLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSW 64 L + RAKRDF T EPSG A S +F IQ+H A RLHYD RLELDGV KSW Sbjct: 4 NLSKDRAKRDFKKTREPSGEAQVK----PSNRRRFVIQKHDATRLHYDLRLELDGVFKSW 59 Query: 65 AVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHG--DAR 122 AV KGPSLDP DKRLAV VEDHP DYG FEG +P QYG G V+LWDRG W P G Sbjct: 60 AVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGRKSPE 119 Query: 123 AGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKE-NWLLIKDDDAAAASGEQAAITELR 181 L KG F L G++L G + LVRM GK NWLLIK D + AAI E Sbjct: 120 EALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEEN 179 Query: 182 PESV----------KDLGDQAPP-VKARASAKA-----------------------APDS 207 SV + G + P + A A +A A + Sbjct: 180 ATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDVATST 239 Query: 208 TGPMPAQMQAQLATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWP 267 +P ++ QL + R PA + WL E+KFDGYR RI G+ + TR+GLDW+ ++P Sbjct: 240 AADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWTAKYP 299 Query: 268 ILAQALARLPVDEAWIDGEVVALDAQGQISFEALQ-NLARGDRQQADGIRLALYAFDLLY 326 +A A + LP + IDGE+ ALD G F ALQ L+ G L +AFDLL+ Sbjct: 300 EIADAASELP--DCIIDGEICALDDNGAPDFAALQAALSEGKTGN-----LVYFAFDLLF 352 Query: 327 LNGHDLREIPLRQRKELLRELIPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKR 386 G DLR + L +RK+ L + + + + Y +H E V R AC+ +EGIV K+ Sbjct: 353 DGGEDLRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQ 412 Query: 387 ADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVG 446 DAPY R W K KC E VI GY G+ F ++LVGV+ + Y GRVG Sbjct: 413 MDAPYQSGRTDTWAKSKCRAGHEVVIGGYATTNGK---FRSLLVGVH-RGDHFVYVGRVG 468 Query: 447 TGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQRRGVHWL---RPALVAEVRFAQWTSTG 503 TGF +E + LE + F ++ + V WL R VR +ST Sbjct: 469 TGFGAAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWLPDGRALPACRVR----SSTD 524 Query: 504 ILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAPAAAPAR 546 ++R RR G P A ++ A+ P R Sbjct: 525 VVR---------------FRRSGRSPRALRSDRSEGRASCPRR 552 >Rv0938_2 [L] COG1793 ATP-dependent DNA ligase Mtu Mycobacterium tuberculosis H37Rv Length = 468 Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 185/526 (35%), Positives = 262/526 (49%), Gaps = 67/526 (12%) Query: 5 KLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSW 64 +L RYR RD + TPEP A + + F IQ HHARR HYDFRLE DGVL SW Sbjct: 5 RLTRYRRMRDASKTPEPIPTAKPVTGDGNT----FVIQEHHARRPHYDFRLECDGVLVSW 60 Query: 65 AVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQW---RPHGDA 121 AVPK + LA+ EDHP +Y +FEG IP+ +YGAG V++WD G + + H D Sbjct: 61 AVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP 120 Query: 122 RAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELR 181 G + L G ++ GR+AL+R + WL + + + Sbjct: 121 HTG----EVIVNLHGGRISGRYALIRTNG------DRWLAHR-------------LKNQK 157 Query: 182 PESVKDLGDQAPPVKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDGY 241 + V + + AP + + A ++A QW E K+DGY Sbjct: 158 DQKVFEFDNLAPMLATHGTV-----------AGLKAS------------QWAFEGKWDGY 194 Query: 242 RGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQISFEAL 301 R L DHG + +R G D + +P L L +DGE V LD+ G SF + Sbjct: 195 RLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQM 254 Query: 302 QNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGLLLYSE 361 QN R R+ +AFDLLYL+G L + R++LL L + L E Sbjct: 255 QNRGRD-------TRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATS----LTVPE 303 Query: 362 HIEGHAAEVFRHACQHGMEGIVLKRADAPYT-GRRDRYWLKLKCEHRQEFVIAGYTEPAG 420 + G A+ F + +HG EG++ KR D+ Y GRR W+K K + QE VI G+ G Sbjct: 304 LLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEG 363 Query: 421 QRS-GFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQ 479 RS G G++L+G+ L++AGRVGTG ++ L L + PL D+ F P + Sbjct: 364 GRSSGVGSLLMGIPGPG-GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARD 422 Query: 480 RRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRRE 525 +G+ +++PALVAEVR+++WT G LR S+ LR DK P ++ RE Sbjct: 423 AKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 468