BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0049.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transd... 238 9e-63 AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 187 3e-47 YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transd... 186 4e-47 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 181 1e-45 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 179 6e-45 AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transd... 172 5e-43 AGl385 [ET] COG0834 ABC-type amino acid transport/signal transdu... 165 8e-41 AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transd... 159 8e-39 mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transd... 141 2e-33 AGl669 [ET] COG0834 ABC-type amino acid transport/signal transdu... 140 4e-33 >SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 265 Score = 238 bits (607), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 162/244 (66%) Query: 22 AQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIV 81 A A A +L DI ARKKV++ +DL PPFG+TN +++P G DV+ A+LLAKDLGVELE+V Sbjct: 22 AATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVELELV 81 Query: 82 QVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDL 141 VTG +RIP L TGK D V++SF I ER VAF+ PYG + ++ APK IKSL DL Sbjct: 82 PVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKSLADL 141 Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAK 201 GKRV V RG + +L+ +G +VRFDDD+T A++SGQVDA+ T N +A+ + + Sbjct: 142 AGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAAQLQE 201 Query: 202 QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVGSPMPD 261 + P + E K Y +GLR+ +P L WLN + + ++G+L IY++W+ +P+P+ Sbjct: 202 RYPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKTPIPE 261 Query: 262 LAQF 265 L F Sbjct: 262 LPSF 265 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 105/260 (40%), Positives = 152/260 (58%), Gaps = 9/260 (3%) Query: 7 FTRK------AAAVVLGLACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQ 60 F+R+ A +V LG F+ AA ADAL DI +R + VA+ PPFG + PQ Sbjct: 2 FSRRLLLAIAAVSVTLG---FSPAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQ 58 Query: 61 GSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 120 G D++ A L+ + LGV++E+V VT NR+P+L T K D+VISS P+R+KV+ F+ Y Sbjct: 59 GYDIDVANLIGEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAY 118 Query: 121 GASQFVVAAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAA 180 V AP + DL GK + V RG ++D LT +AP T I R++D+ +A Sbjct: 119 APFFNGVFAPDSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISA 178 Query: 181 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITA 240 ++GQV+A+ T N +A+AI +NP K E KF IK+ P IGL K +PAL + +N I Sbjct: 179 FLAGQVEAVATGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIAT 238 Query: 241 NLKNGKLPGIYQQWVGSPMP 260 +G L I Q+W+ + +P Sbjct: 239 AKTDGSLNTIAQKWLKTDLP 258 >YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 262 Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 146/239 (61%) Query: 22 AQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIV 81 A A AD L I+ R + VA+ PPFG L+PQG D++ A+ LA + ++L++V Sbjct: 19 APAVLADQLEKIQQRGVLRVAVPQDFPPFGSVGTDLQPQGYDIDMAQYLADKMKLKLQLV 78 Query: 82 QVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDL 141 VT NR+P+L T K D+VISS PER+K +AF++ Y V K + +K L Sbjct: 79 SVTSANRVPYLQTDKVDLVISSLGKNPEREKAIAFSRAYAPFFLGVFGAKDDELKQPEQL 138 Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAK 201 GK + V RG ++D +L+ IAPK I R++D+ T +A +SGQV+ L T N + SA+A+ Sbjct: 139 AGKTIGVTRGAVEDMVLSEIAPKAAQIRRYEDNNTTLSAYLSGQVNYLATGNLVISALAR 198 Query: 202 QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVGSPMP 260 QNP + KF +KD P IGLR+GEPAL+ ++ I L++ L G+ ++W+ +P+P Sbjct: 199 QNPKQAPVAKFMLKDSPCYIGLRQGEPALKAKVDALIGDALQDNTLNGLSEKWLKAPLP 257 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 142/236 (60%) Query: 25 AHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVT 84 AHADALA+I+ + VAI PPFG L+ QG D++ A L+AK+LGV+ E+V VT Sbjct: 29 AHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELVPVT 88 Query: 85 GPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGK 144 NRIPFL TGK D+VISS ER KV+ FTQ Y V PK +IK+ DL GK Sbjct: 89 STNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADLAGK 148 Query: 145 RVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNP 204 + V RG+ +D LT +AP I R++D+ + + GQV + N +A+A+ ++ Sbjct: 149 TIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNERTR 208 Query: 205 SKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVGSPMP 260 + L+ KF ++D P +G+ KGEPAL + +N IT +G+L + Q+W+ P+P Sbjct: 209 LRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLP 264 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 99/262 (37%), Positives = 150/262 (57%), Gaps = 4/262 (1%) Query: 4 LLSFTRKAAAVVLGLACFA---QAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQ 60 L++ +R+ A VLG A A A A + IK+ V V + + PPFG+ +A +P Sbjct: 6 LMNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPD 65 Query: 61 GSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 120 G D + A+LLAK+LGVE+ IV VTGPNRIP+L + + D++++S IT ER K V F+QPY Sbjct: 66 GYDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPY 125 Query: 121 GASQFVVAAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAA 180 V + DL GK + V R + QD+ T IAP+ NI RFDDDA+ A Sbjct: 126 AGISIGVFGAADLAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQA 185 Query: 181 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITA 240 ++SGQV+ + N +A+ I P + K + I +RKG + K++N ++ Sbjct: 186 LLSGQVELIGVSNVVAAQIEAAAPGR-FNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDK 244 Query: 241 NLKNGKLPGIYQQWVGSPMPDL 262 +G+L I+++W+GSP+P+ Sbjct: 245 VKADGQLNAIHEKWLGSPLPEF 266 >AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/267 (38%), Positives = 148/267 (55%), Gaps = 2/267 (0%) Query: 1 MKKLLSFTRKAAAVVLGLACFAQ-AAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEP 59 M SF AAA+ + F +A+A ++ DI R V + + +GAPPFG +A+ P Sbjct: 2 MSIFQSFKSVAAAIAVCAGIFTGFSANAQSVDDIVKRGSVKIGVLVGAPPFGSVDAQGNP 61 Query: 60 QGSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQP 119 G D + A L+ K LGV + +VQ+T P+RIP L +GK D ++++ + TPER K V FT P Sbjct: 62 VGYDADVATLIGKYLGVPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMFTNP 121 Query: 120 YGASQFVVAAPKGENIKSLNDLVGKRVAVVRG-NMQDSLLTPIAPKGTNIVRFDDDATVT 178 Y A Q + + K I+ DL G V V RG +++ + G I+RFDDDAT Sbjct: 122 YSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDATTM 181 Query: 179 AAIISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWI 238 A+ SGQV A+ P++ A+A K E KF P ++ +RK L +WLN I Sbjct: 182 QALFSGQVQAIAGPDAQANAAIKLRGDTTTEVKFFFSIQPNSMTVRKDAVDLHQWLNNTI 241 Query: 239 TANLKNGKLPGIYQQWVGSPMPDLAQF 265 +NG+L I ++WVG+P+P L F Sbjct: 242 YYIKQNGELDAIARKWVGTPLPVLPTF 268 >AGl385 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 294 Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 136/237 (57%) Query: 29 ALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPNR 88 +L++I AR KV + + GAPP GM + K P G DV+ A L+ L + +E+V +T P R Sbjct: 58 SLSEITARGKVKIGVLTGAPPMGMVDEKGNPSGYDVDVANLIGSYLSLPVELVPLTPPAR 117 Query: 89 IPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVAV 148 IP L TGK D ++++ + T ER K V FTQPY A + + K + ++L+ L GKRV+V Sbjct: 118 IPALQTGKVDFLVATLAPTGERAKTVMFTQPYSAFNMDIISGKDQKFENLDSLKGKRVSV 177 Query: 149 VRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNL 208 RG+ Q++ L +G IV ++DD+T A+++GQVDA+ P+++ AI KQ P L Sbjct: 178 NRGSSQETALRKANVEGLEIVVYEDDSTSAQALLAGQVDAVALPSTVGEAIIKQRPEAGL 237 Query: 209 ETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVGSPMPDLAQF 265 + F ++ + + L +WLN I +G L I +W G P+P L F Sbjct: 238 QVGFTFFQQGNSMATKIEDFELRQWLNTSIYLMKMSGDLDRISVKWTGRPLPQLPSF 294 >AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 259 Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 28 DALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPN 87 D LAD+ + K+ V + L A P+G +A+ + G DVE AR++AKDL ELEIV +TG + Sbjct: 24 DTLADVTSNGKLRVGVLLDAAPWGYKDAEGKDTGLDVELARIMAKDLNAELEIVPLTGAS 83 Query: 88 RIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVA 147 RIP L+ K D++I++ TPER + V F+QPY A V GE I ++ L GK++A Sbjct: 84 RIPSLLADKVDVLIAAAGATPERAQQVMFSQPYAAVSLGVFGGDGEKIDDVSGLAGKQIA 143 Query: 148 VVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKN 207 V +G+ D+ LT AP+ +VRF+D + AA ++GQ D +++A +A NP KN Sbjct: 144 VAKGSTLDTWLTDNAPE-VKLVRFEDTPSAIAAFLAGQADYFAENSAIAVKVADDNPGKN 202 Query: 208 LETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKL 247 + + I+ P +G+++GE W+N ++ + NG L Sbjct: 203 VAIVYRIRLSPAHVGVKQGEQNFLNWINTFLFFHNMNGDL 242 >mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 269 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/256 (37%), Positives = 139/256 (54%), Gaps = 7/256 (2%) Query: 11 AAAVVLG---LACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETA 67 AA +VLG L QAA+ADALADI + V + PPF +A + +G D++ A Sbjct: 12 AAILVLGAAGLGIATQAANADALADITKAGTINVGVFADFPPFSSASADMSLKGYDMDVA 71 Query: 68 RLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVV 127 + +A L V+L V VTG NRIP+L + D+++S + ER++V+ F Y V Sbjct: 72 QYIADTLKVKLNPVAVTGQNRIPYLNDHRVDILMS-VGYSKEREQVIDFAAAYAPYYIAV 130 Query: 128 AAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVD 187 P ++K DL K +AV RG ++D+ LT AP +I RFD+ +V A ISGQ Sbjct: 131 IGPAAMSVKGKEDLADKSIAVNRGTLEDTSLTEAAPASADIKRFDNYNSVIQAFISGQTQ 190 Query: 188 ALCTPNSL-ASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGK 246 + N + A +AKQ+ K E KF + P IGL K E L+K +N+ I L +GK Sbjct: 191 LMVVGNDVGAQVLAKQDVLKP-EQKFQLLTSPSHIGLNKNEDGLKKAVNDAIAKMLADGK 249 Query: 247 LPGIYQQWVGSPM-PD 261 L + W+ +P+ PD Sbjct: 250 LDESSKAWLKTPLNPD 265 >AGl669 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 278 Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 24 AAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQV 83 A A L + K+ K+++ I P+G N+ +G D + AR A LG+++E V + Sbjct: 29 GADARTLEEAKSSGKIVIGIQGDNAPWGFINSSGVQEGYDADLARGFADYLGLKVEFVPL 88 Query: 84 TGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVG 143 NRIP L TGK D + +S +TPER K V + QPY + V A K + I + +DL G Sbjct: 89 AVANRIPSLRTGKVDALFASMGMTPERAKNVQYAQPYAHNVMSVYATKDKKIANFDDLTG 148 Query: 144 KRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQN 203 V + + D+ LT A NI+RFDDDA AI+SGQ++A+ +A Sbjct: 149 MTVGAPKSSPMDTALTAGAGTKANILRFDDDAATIQAILSGQIEAIGGNQFYGDRLAAAG 208 Query: 204 PSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVGSPMPDL 262 K+ E KF + + + R GE + LN W+ NG L +Y +W+ P+PD Sbjct: 209 -GKDYEVKFDLVTLYNSAATRPGEKDWNEALNAWLDKAKANGDLAKVYAKWMKRPVPDF 266