BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0046.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl383 [E] COG0765 ABC-type amino acid transport system, permeas... 222 7e-58 SMa0079 [E] COG0765 ABC-type amino acid transport system, permea... 221 1e-57 AGl664 [E] COG0765 ABC-type amino acid transport system, permeas... 201 2e-51 SMa0501 [E] COG0765 ABC-type amino acid transport system, permea... 197 2e-50 AGc2567 [E] COG0765 ABC-type amino acid transport system, permea... 180 3e-45 AGc2584 [E] COG0765 ABC-type amino acid transport system, permea... 177 2e-44 YPO3256 [E] COG0765 ABC-type amino acid transport system, permea... 170 2e-42 RSc2104 [E] COG0765 ABC-type amino acid transport system, permea... 170 3e-42 AGpA329 [E] COG0765 ABC-type amino acid transport system, permea... 168 7e-42 mlr4898 [E] COG0765 ABC-type amino acid transport system, permea... 153 3e-37 >AGl383 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 222 bits (565), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 150/206 (72%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+YTF F ++ + LL G WLTI+LS LSIVLG A G L A +VR +V Y Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGGIVRIIVDGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTP LVQ+F+V+FGL +G+++ A+TAA+I +T+N+ AY+TEI+RAGI ++H Q Sbjct: 61 VEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEA E LG +++ +Y HV+++PA+ +VYPSL SQF+L+MLASSI S IS EL A A V Sbjct: 121 IEAGEALGFTKYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAFV 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFR 206 +S+T+RSFEVY V+ + YL L+ R Sbjct: 181 ESQTYRSFEVYIVVTLIYLALALSLR 206 >SMa0079 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 222 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 156/222 (70%), Gaps = 2/222 (0%) Query: 3 YTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAYVE 62 Y F+F V A++D+LL+GAWLT++LS ++++G V CA + A++R ++ Y+E Sbjct: 2 YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61 Query: 63 IIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQIE 122 IIRNTP LVQ+F +FFG+ S+G +LS +AA++AL VN GAY TEI+RAGI SIH GQ+E Sbjct: 62 IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121 Query: 123 AAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQS 182 A LG+SR ++ +VV+ PA+ VYP+LTSQFI LML +S+ S ISA++L A N +QS Sbjct: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181 Query: 183 ETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLG 224 TF SFEVY + + YL LS F F+A+ + AF K LG Sbjct: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAF--KYPLG 221 >AGl664 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 143/217 (65%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+Y+ DF +V LL+ TI L+ + L +G L +A +SR L+RGLV+ + Sbjct: 49 MSYSLDFSAVIERLPELLLACLATIGLAIAGMSLATVLGVLGVVARRSRFKLLRGLVIGF 108 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTP LVQ+F +FF L IG KL+ A+IAL +N GAY EI+R G++SI GQ Sbjct: 109 VEAIRNTPFLVQIFFIFFALPQIGIKLNPTVTAIIALALNGGAYAIEIIRGGVDSIPKGQ 168 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EA LG+ R ++ H++L PA+ VYPSLTSQFI+L L +S+ + I+A ELT+ A + Sbjct: 169 VEAGLALGLHRAQIFRHIILKPALRAVYPSLTSQFIMLTLTTSVCTSIAAYELTSVAQKI 228 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAF 217 +++TFRSFEVY I + YLV+S L G F IS+ +F Sbjct: 229 EADTFRSFEVYFSITLLYLVISSLMMGIFALISRASF 265 >SMa0501 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 228 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 143/222 (64%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+YTF F + +++ G WLTI LS + I G A+G CA+ + R LV Y Sbjct: 1 MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE++RNTPLLVQ+F++FFGL +IG +LS T+ IAL +N G Y EI+R GI + H Q Sbjct: 61 VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAE LG+S F +V+L PA+E+V+ + SQ +LLML++S+ S I E+LT A + Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRK 222 SETFR+ E+Y V+A+ Y+VL+F+FR + F R R+ Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRR 222 >AGc2567 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 223 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 141/206 (68%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M YTFDF + + ++ G +T++L A+ VLG A+G CA +R V Y Sbjct: 1 MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTP L+Q+F +FFGL S+G +LS +AA IA+ VN+GAY+ EI+RAGI + GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 EA L M+RF + HVVL+P+++R++P+L+SQ +++ML SS+ SQI+AE+LT AN + Sbjct: 121 FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFR 206 QS TFR+FE Y V V YLVL+ L R Sbjct: 181 QSRTFRAFEAYMVSTVIYLVLAILLR 206 >AGc2584 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 139/200 (69%), Gaps = 8/200 (4%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLAL----VRGL 56 MN++ F +VFA D + G LTI LSA +IVLG T+ A+A + +L +R Sbjct: 37 MNFSLHFEAVFAESDLIWRGILLTIGLSATAIVLG----TMIAVALVAMRSLGNGTIRFC 92 Query: 57 VLAYVEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSI 116 V +YVE++RNTP LVQ+F+VFFGL +G+++S AA+ A+T+N+ AY TEI+RAG+ SI Sbjct: 93 VDSYVELLRNTPFLVQLFMVFFGLPLVGFRMSGTQAALFAMTLNLSAYATEIIRAGVESI 152 Query: 117 HPGQIEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTAT 176 H Q+EA L +SR V+ +VV+ PA +++P+L+SQF+L++LASSI S IS EL+ Sbjct: 153 HRSQVEAGLSLSLSRLQVFRYVVMKPAFAKIWPALSSQFVLMLLASSICSFISVPELSGA 212 Query: 177 ANLVQSETFRSFEVYAVIAV 196 A++++ TFRSFE Y V+ V Sbjct: 213 ASIIEQRTFRSFETYIVVTV 232 >YPO3256 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 222 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 129/189 (68%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M Y +F +++ LL G TI+L+ ++ + G A+G A ++R L Y Sbjct: 1 MTYQLNFAALWPYLPELLSGLLTTIELTVMATIGGIALGICGAAIRCGNTVILRRLWGGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEI+RNTP +VQ+F + FGL ++G KLSA AA++A+T+N+GAY+TEI+R+GI + GQ Sbjct: 61 VEIVRNTPFVVQLFFIVFGLPALGLKLSAGQAALLAMTINLGAYSTEIIRSGIQASAKGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 EAA LG+SR ++ V+L P+++R+YP+L SQ I++ML S++ SQ+S EELT ANL+ Sbjct: 121 WEAARVLGLSRSQTFFRVILPPSLQRIYPALVSQCIIVMLGSAVVSQVSFEELTFAANLI 180 Query: 181 QSETFRSFE 189 QS TF SFE Sbjct: 181 QSRTFLSFE 189 >RSc2104 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 248 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 130/194 (67%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M Y FDF +VF+ +L GA T+ L+A VLG A+G + R+A GL Y Sbjct: 1 MAYQFDFGAVFSYSGQLAQGAGFTLALTAAGAVLGGAIGLAGGVCRAWRIAPFNGLFKVY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTP L+Q+ VFFGL S+G +++ AA++ VN+GAY TEI+RAGI GQ Sbjct: 61 VEAIRNTPFLIQLMFVFFGLPSLGLQINEWQAALLTTVVNLGAYITEIVRAGIQETPRGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAA L MSR+ + HVVL PA+++V+P+L+SQ +++ML +S+ SQI+A++LT AN + Sbjct: 121 LEAASALAMSRWTCFRHVVLRPALQKVWPALSSQIVIVMLGTSVVSQIAAQDLTFAANFI 180 Query: 181 QSETFRSFEVYAVI 194 QS FR+FE Y V+ Sbjct: 181 QSRNFRAFETYLVV 194 >AGpA329 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 222 Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 137/214 (64%) Query: 4 TFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAYVEI 63 +F+F ++ D+ + G T+ L+ + +G +G + A+ +S R V AY+EI Sbjct: 3 SFNFRPLWRYEDQFIDGVLTTLLLTVSATAIGLIIGIIGAVVLRSGPKPARIGVRAYIEI 62 Query: 64 IRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQIEA 123 IRNTP L+Q+F++FF L +IG K S A+++AL++ GAY +EI+R+G+NSI P QIEA Sbjct: 63 IRNTPALLQIFIIFFVLPTIGLKFSPIHASIVALSIYFGAYASEILRSGLNSIPPSQIEA 122 Query: 124 AECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQSE 183 CLG++R+ V +VL PA+ +YPS+TSQF+LL+L +SI SQ+S +EL A + S Sbjct: 123 GVCLGLTRWQVLSRIVLPPAIRNIYPSMTSQFVLLLLGTSIASQVSTDELFHAAGFIDSR 182 Query: 184 TFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAF 217 T+RSFEVYA+ Y L F+ F + + F Sbjct: 183 TYRSFEVYALTCGIYFTLVVFFKIVFALVGRAVF 216 >mlr4898 [E] COG0765 ABC-type amino acid transport system, permease component Mlo Mesorhizobium loti Length = 218 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 125/187 (66%) Query: 20 GAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAYVEIIRNTPLLVQVFLVFFG 79 GA TI L A++ + G + L A ++ L+R + YVE++RNTP LVQ+F +FFG Sbjct: 16 GAATTILLIAVTTLAGTLLSILGAAGRRNGPVLLRHAIAWYVEVMRNTPFLVQLFFIFFG 75 Query: 80 LASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQIEAAECLGMSRFHVYWHVV 139 L S+G +L AA++A+T+N+ AYT EI+ AG++++ GQ EAA LG+ V+ +V Sbjct: 76 LPSLGIRLDPILAAMLAMTLNMAAYTIEIVGAGLDAVPGGQTEAALALGLRPRQVFIKIV 135 Query: 140 LLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQSETFRSFEVYAVIAVAYL 199 L A++ +YP+LTSQ +++ML S++ SQI+ ELT A+++Q+ TFRSFE Y V+ + YL Sbjct: 136 LPQALKIIYPALTSQIVIMMLESAVVSQIAVRELTYEADMLQARTFRSFETYFVVTLVYL 195 Query: 200 VLSFLFR 206 +S R Sbjct: 196 AMSMALR 202