BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0003.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2223 [L] COG1722 Exonuclease VII small subunit Rso Ralstonia ...    98   5e-21
NMB0262 [L] COG1722 Exonuclease VII small subunit Nme Neisseria ...    60   1e-09
XF0660 [L] COG1722 Exonuclease VII small subunit Xfa Xylella fas...    57   7e-09

>RSc2223 [L] COG1722 Exonuclease VII small subunit Rso Ralstonia
          solanacearum
          Length = 94

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 2/93 (2%)

Query: 1  MPRTSATASAASAASAP-LPASFEQAMQELEQLVAQMEAGELPLEASVAAYKRGSELVRF 59
          MPR    A + +  S+P  PAS+E AM ELE LVA ME+GELPLEAS+AAY+RG+ELVR+
Sbjct: 1  MPRAQDVAQSDATLSSPATPASYEAAMAELETLVASMESGELPLEASLAAYRRGAELVRY 60

Query: 60 CAAQLDKVDTQVKLLEGDMLKPFQAAEMDGEEG 92
          C   L++V+ QV++L+GD LKP  A E   E+G
Sbjct: 61 CQQVLERVEQQVRVLDGDALKPL-AGEGTNEQG 92


>NMB0262 [L] COG1722 Exonuclease VII small subunit Nme Neisseria
          meningitidis MC58
          Length = 74

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 19 PASFEQAMQELEQLVAQMEAGELPLEASVAAYKRGSELVRFCAAQLDKVDTQVKLLEGDM 78
          P SFE+A+  LE L   M+ GE+PLE ++AAY+ G+ELVR+C  +L +V+ ++++L+ D 
Sbjct: 6  PKSFEEALSRLESLTQSMQ-GEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDTDG 64

Query: 79 LKPF 82
          LK  
Sbjct: 65 LKEL 68


>XF0660 [L] COG1722 Exonuclease VII small subunit Xfa Xylella fastidiosa
          9a5c
          Length = 88

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%)

Query: 20 ASFEQAMQELEQLVAQMEAGELPLEASVAAYKRGSELVRFCAAQLDKVDTQVKLLEGDM 78
          A FEQ++QELEQLV  ME G L LE S+ AY+RG  L R C   L++   +V+LL   M
Sbjct: 13 ARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQAQLRVRLLSDPM 71