BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0031.p (111 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3024 [J] COG0048 Ribosomal protein S12 Rso Ralstonia solanace... 210 6e-55 NMB0136 [J] COG0048 Ribosomal protein S12 Nme Neisseria meningit... 196 1e-50 NMA0137 [J] COG0048 Ribosomal protein S12 NmA Neisseria meningit... 196 1e-50 rpsL [J] COG0048 Ribosomal protein S12 Eco Escherichia coli K12 194 4e-50 ZrpsL [J] COG0048 Ribosomal protein S12 EcZ Escherichia coli O15... 194 4e-50 STM3448 [J] COG0048 Ribosomal protein S12 Sty Salmonella typhimu... 194 4e-50 ECs4193 [J] COG0048 Ribosomal protein S12 Ecs Escherichia coli O... 194 4e-50 HI0581 [J] COG0048 Ribosomal protein S12 Hin Haemophilus influenzae 193 7e-50 PA4268 [J] COG0048 Ribosomal protein S12 Pae Pseudomonas aeruginosa 193 1e-49 YPO0200 [J] COG0048 Ribosomal protein S12 Ype Yersinia pestis 192 2e-49 >RSc3024 [J] COG0048 Ribosomal protein S12 Rso Ralstonia solanacearum Length = 125 Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 102/109 (93%), Positives = 106/109 (97%) Query: 1 VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60 +KSKSPALEN PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE Sbjct: 17 LKSKSPALENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76 Query: 61 HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAA 109 HSVVLIRGGRVKDLPGVRYH+VRG+LD QGVKDRKQARSKYGAKR KAA Sbjct: 77 HSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKAA 125 >NMB0136 [J] COG0048 Ribosomal protein S12 Nme Neisseria meningitidis MC58 Length = 123 Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 96/105 (91%), Positives = 98/105 (93%) Query: 3 SKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHS 62 +K PALE PQKRGVCTRVYTTTPKKPNSALRKV KVRLTNGFEVISYIGGEGHNLQEHS Sbjct: 19 NKVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHS 78 Query: 63 VVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAK 107 VVLIRGGRVKDLPGVRYH VRG+LDT GVKDRKQARSKYGAKR K Sbjct: 79 VVLIRGGRVKDLPGVRYHTVRGSLDTAGVKDRKQARSKYGAKRPK 123 >NMA0137 [J] COG0048 Ribosomal protein S12 NmA Neisseria meningitidis Z2491 Length = 123 Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 96/105 (91%), Positives = 98/105 (93%) Query: 3 SKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHS 62 +K PALE PQKRGVCTRVYTTTPKKPNSALRKV KVRLTNGFEVISYIGGEGHNLQEHS Sbjct: 19 NKVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHS 78 Query: 63 VVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAK 107 VVLIRGGRVKDLPGVRYH VRG+LDT GVKDRKQARSKYGAKR K Sbjct: 79 VVLIRGGRVKDLPGVRYHTVRGSLDTAGVKDRKQARSKYGAKRPK 123 >rpsL [J] COG0048 Ribosomal protein S12 Eco Escherichia coli K12 Length = 124 Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/107 (87%), Positives = 96/107 (89%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PALE PQKRGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 SV+LIRGGRVKDLPGVRYH VRGALD GVKDRKQARSKYG KR KA Sbjct: 78 SVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA 124 >ZrpsL [J] COG0048 Ribosomal protein S12 EcZ Escherichia coli O157:H7 EDL933 Length = 124 Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/107 (87%), Positives = 96/107 (89%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PALE PQKRGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 SV+LIRGGRVKDLPGVRYH VRGALD GVKDRKQARSKYG KR KA Sbjct: 78 SVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA 124 >STM3448 [J] COG0048 Ribosomal protein S12 Sty Salmonella typhimurium LT2 Length = 124 Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/107 (87%), Positives = 96/107 (89%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PALE PQKRGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 SV+LIRGGRVKDLPGVRYH VRGALD GVKDRKQARSKYG KR KA Sbjct: 78 SVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA 124 >ECs4193 [J] COG0048 Ribosomal protein S12 Ecs Escherichia coli O157:H7 Length = 124 Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/107 (87%), Positives = 96/107 (89%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PALE PQKRGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 SV+LIRGGRVKDLPGVRYH VRGALD GVKDRKQARSKYG KR KA Sbjct: 78 SVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA 124 >HI0581 [J] COG0048 Ribosomal protein S12 Hin Haemophilus influenzae Length = 124 Score = 193 bits (491), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/108 (87%), Positives = 96/108 (88%) Query: 1 VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60 VKS PALE PQKRGVCTRVYTTTPKKPNSALRKV ++RLTNGFEV SYIGGEGHNLQE Sbjct: 17 VKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRIRLTNGFEVTSYIGGEGHNLQE 76 Query: 61 HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 HSVVLIRGGRVKDLPGVRYH VRGALD GVKDRKQ RSKYG KR KA Sbjct: 77 HSVVLIRGGRVKDLPGVRYHTVRGALDCAGVKDRKQGRSKYGVKRPKA 124 >PA4268 [J] COG0048 Ribosomal protein S12 Pae Pseudomonas aeruginosa Length = 123 Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/106 (87%), Positives = 97/106 (91%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PAL+N PQ+RGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSDVPALQNCPQRRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVSSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAK 107 SVVLIRGGRVKDLPGVRYH VRG+LDT GVKDRKQ RSKYGAKR K Sbjct: 78 SVVLIRGGRVKDLPGVRYHTVRGSLDTSGVKDRKQGRSKYGAKRPK 123 >YPO0200 [J] COG0048 Ribosomal protein S12 Ype Yersinia pestis Length = 124 Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/107 (85%), Positives = 96/107 (89%) Query: 2 KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61 KS PALE PQKRGVCTRVYTTTPKKPNSALRKV +VRLTNGFEV SYIGGEGHNLQEH Sbjct: 18 KSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEH 77 Query: 62 SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKA 108 SV+LIRGGRVKDLPGVRYH VRGALD GVKDRKQ+RSKYG K+ KA Sbjct: 78 SVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQSRSKYGVKKPKA 124