BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0010.p (158 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0346 [G] COG2893 Phosphotransferase system, mannose/fructose-... 110 1e-24 BMEI2032 [G] COG2893 Phosphotransferase system, mannose/fructose... 84 9e-17 XF1404 [G] COG2893 Phosphotransferase system, mannose/fructose-s... 80 2e-15 AGc50 [G] COG2893 Phosphotransferase system, mannose/fructose-sp... 79 3e-15 mll5091 [G] COG2893 Phosphotransferase system, mannose/fructose-... 78 9e-15 SMc02753 [G] COG2893 Phosphotransferase system, mannose/fructose... 70 3e-12 NMB2046 [G] COG2893 Phosphotransferase system, mannose/fructose-... 69 3e-12 NMA0390 [G] COG2893 Phosphotransferase system, mannose/fructose-... 67 2e-11 lin0143_1 [G] COG2893 Phosphotransferase system, mannose/fructos... 65 8e-11 CC0240 Non COG 61 9e-10 >RSc0346 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Rso Ralstonia solanacearum Length = 169 Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 80/126 (63%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGS 82 M GIL++ HAPL A A HV+ G+PE++ AIDV+ D PA V A + L + + Sbjct: 19 MAGILIIAHAPLASALRDCAAHVYCGQPERLAAIDVLPDAEPAGVLAQARAKLDELIEDN 78 Query: 83 GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRNDTLDVVVEMALAGGQ 142 G LV+TD+ G TP+N L G V+V+AG++LPML+RA+ YR + LD + ALAGG Sbjct: 79 GALVLTDIFGATPANIASRLADPGRVRVLAGVNLPMLVRAICYRAEKLDQLAAKALAGGS 138 Query: 143 NGAVRI 148 G +++ Sbjct: 139 QGVLQV 144 >BMEI2032 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Bme Brucella melitensis Length = 144 Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 14 RVASDGN-NSMVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAI 72 R A DG+ SM+G++L+TH L + FL A HV G E E + + A+ + + ++ + Sbjct: 2 RWARDGSFYSMIGLVLVTHGRLAEEFLYAVEHVV-GPQENFETVCIGAEDDMEQRRRDIV 60 Query: 73 EAVGRLDDGSGVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYR 126 +AV R D G GV+++TD+ GGTPSN + G ++VIAG++LPML++ + R Sbjct: 61 DAVERADSGRGVIILTDMFGGTPSNLAISVMEAGRIEVIAGVNLPMLIKLSSVR 114 >XF1404 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Xfa Xylella fastidiosa 9a5c Length = 130 Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 25 GILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGSGV 84 GILL+TH +G A L AT + + P +IEA +V D + + A A+ R+++G GV Sbjct: 4 GILLITHPGIGHALLRVATALLQQLPLKIEAFEVPLDADLDTLLPHASTAMHRVNNGEGV 63 Query: 85 LVITDVMGGTPSNCTGFLCGLGN-VQVIAGISLPMLLRALTYRNDTLDVVVEMALAGGQN 143 LV+TD+ G +PSN L LG V+ ++ +SLPMLLR + + L + A A +N Sbjct: 64 LVMTDLYGASPSNLAHRLAQLGTPVRRVSALSLPMLLRVMNHPEQNLQDLPATAAAATRN 123 Query: 144 GAV 146 GA+ Sbjct: 124 GAI 126 >AGc50 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 133 Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 76/121 (62%), Gaps = 2/121 (1%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGS 82 M+G++L+TH L + F A HV G + IE + + + + + ++ I+AV R +DG+ Sbjct: 1 MIGLVLVTHGKLAEEFRHALEHVV-GPQKLIETVCIGPEDDMDQRRQDIIDAVARANDGN 59 Query: 83 GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRN-DTLDVVVEMALAGG 141 GV+++TD+ GGTPSN + GNV+VIAG++LPML++ R+ D +D ++ A G Sbjct: 60 GVIILTDMFGGTPSNLAISVMNNGNVEVIAGVNLPMLIKLAGVRSEDNMDKALQDASDAG 119 Query: 142 Q 142 + Sbjct: 120 R 120 >mll5091 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Mlo Mesorhizobium loti Length = 133 Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGS 82 M+G++L+TH L F A HV G + E + + AD + + ++ ++AV R+D G+ Sbjct: 1 MIGLVLVTHGQLATEFRHAVEHVV-GPQDNFETVAIGADDDMEQRRRDIVDAVARVDTGA 59 Query: 83 GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRN 127 GV+V+TD+ GGTPSN + G +VIAG++LPML++ + R Sbjct: 60 GVIVLTDMFGGTPSNLAISVMESGRTEVIAGMNLPMLIKLSSIRK 104 >SMc02753 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Sme Sinorhizobium meliloti Length = 133 Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGS 82 M+G++L+TH L F A HV G + IE + + + + + ++ ++AV + ++G Sbjct: 1 MIGLVLVTHGKLADEFRHALEHVV-GPQKAIETVCIGPEDDMDQRRQDILDAVEKANEGD 59 Query: 83 GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYR--NDTLDVVVEMALAG 140 GV+++TD+ GGTPSN + G+V+VIAG++LPML++ R +D +VE + AG Sbjct: 60 GVIILTDMFGGTPSNLAISVMRGGSVEVIAGVNLPMLIKLAGVRGESDMDKALVEASEAG 119 >NMB2046 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Nme Neisseria meningitidis MC58 Length = 152 Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 21 NSMVGILLLTHAPLGQAFLAAATHVFRGK-PEQIEAIDVIADQNPAEVQKLAIEAVGRLD 79 ++M+G+L++TH +G+A+ A H F G PE + + V ++ ++ AI A+ Sbjct: 6 HNMIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQDDINNNAIAALQEFP 65 Query: 80 DGSGVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTY 125 D GVL++TD+ G TP N L ++ G++ PM+++A+ Y Sbjct: 66 DNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAVQY 111 >NMA0390 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA NmA Neisseria meningitidis Z2491 Length = 145 Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 1/104 (0%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGK-PEQIEAIDVIADQNPAEVQKLAIEAVGRLDDG 81 M+G+L++TH +G+A+ A H F G PE + + V ++ ++ AI A+ D Sbjct: 1 MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQDDIINNAIAALQEFPDN 60 Query: 82 SGVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTY 125 GVL++TD+ G TP N L ++ G++ PM+++A+ Y Sbjct: 61 DGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAVQY 104 >lin0143_1 [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA Lin Listeria innocua Length = 156 Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDGS 82 MVGI+L TH + L + T +F G+ E ++AI ++ + P +++ A+ D Sbjct: 1 MVGIILATHGEFAEGILQSGTMIF-GEQENVKAITLMPSEGPEDIKAKMEAAIASFDSQD 59 Query: 83 GVLVITDVMGGTPSNCTGFLCGLGNVQ--VIAGISLPMLLRALTYRNDTLDVVVEMA--- 137 VL + D+ GGTP N L L + ++AG++LPML+ A + R T++ E+A Sbjct: 60 EVLFLVDLWGGTPFNQANGLYELHKDKWAIVAGLNLPMLIEAFSSRF-TMESAHEIAANI 118 Query: 138 LAGGQNG 144 LA Q G Sbjct: 119 LAPAQEG 125 >CC0240 Non COG Length = 147 Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 23 MVGILLLTHAPLGQAFLAAATHVFRGKPEQIEAIDVIADQNPAEVQKLAIEAVGRLDDG- 81 M+G++++TH L + F++A HV G ++AI + + + + ++A +D+G Sbjct: 13 MIGLVIVTHGRLAEEFVSAMEHVV-GPQAAVKAICIGPEDDMERRRADILKACAAVDEGG 71 Query: 82 SGVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRN-DTLDVVVEMALAG 140 GV+++TD+ GGTPSN + +VIAG++LPML++ + R +TL V A Sbjct: 72 DGVILLTDMFGGTPSNLAISVMEQTKAEVIAGLNLPMLIKLASVRQRETLQACVAHAQEA 131 Query: 141 GQN 143 G+ Sbjct: 132 GRK 134