BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0005.p (112 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstoni... 184 4e-47 PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomon... 170 6e-43 AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobact... 164 4e-41 mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhiz... 164 4e-41 BMEI0978 [E] COG0347 Nitrogen regulatory protein PII Bme Brucell... 163 7e-41 SMc00947 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhi... 163 8e-41 SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhi... 162 1e-40 CC1968 Non COG 162 2e-40 AGc4999 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobact... 161 3e-40 mll4247 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhiz... 160 5e-40 >RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstonia solanacearum Length = 112 Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/112 (83%), Positives = 100/112 (89%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MKLI AIIKPFKLDEVREALS +GV GITVTEVKGFGRQKGHTELYRGAEY+VDFLPK K Sbjct: 1 MKLIMAIIKPFKLDEVREALSQVGVSGITVTEVKGFGRQKGHTELYRGAEYIVDFLPKVK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 IE AV D ++ERA+EAIE +ARTGKIGDGKIFV D+ VIRIRTGETG DAL Sbjct: 61 IEVAVPDDVLERAVEAIEKSARTGKIGDGKIFVTDVEQVIRIRTGETGGDAL 112 >PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomonas aeruginosa Length = 112 Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/112 (76%), Positives = 96/112 (85%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MKL+TAIIKPFKLD+VRE+LS IGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPK K Sbjct: 1 MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 I+ A+ D ++R +EAI AA TGKIGDGKIFV +L IRIRTGET DA+ Sbjct: 61 IDVAIADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGETDTDAI 112 >AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 157 Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/112 (72%), Positives = 93/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK I AIIKPFKLDEV+EAL +G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K Sbjct: 46 MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 105 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 +E + D E +EAI AA+TG+IGDGKIFV ++ +VIRIRTGETG DA+ Sbjct: 106 VEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNIEEVIRIRTGETGVDAI 157 >mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhizobium loti Length = 112 Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/112 (74%), Positives = 94/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK I AIIKPFKLDEV+EAL G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K Sbjct: 1 MKKIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 IE + D VE A+EAI AA+TG+IGDGKIFV ++ +V+RIRTGETG DA+ Sbjct: 61 IEVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDAV 112 >BMEI0978 [E] COG0347 Nitrogen regulatory protein PII Bme Brucella melitensis Length = 112 Score = 163 bits (413), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 81/112 (72%), Positives = 94/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK I AIIKPFKLDEV+EAL +G+QGITV E KGFGRQKGHTELYRGAEYVVDFLPK K Sbjct: 1 MKKIEAIIKPFKLDEVKEALQEVGLQGITVIEAKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 +E V D V+ A+EAI AA+TG+IGDGKIFV ++ +VIRIRTGE+G DA+ Sbjct: 61 VEVIVADETVDSAIEAIRKAAQTGRIGDGKIFVSNIEEVIRIRTGESGVDAI 112 >SMc00947 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhizobium meliloti Length = 112 Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 81/112 (72%), Positives = 93/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK I AIIKPFKLDEV+EAL +G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K Sbjct: 1 MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 +E + D E +EAI AA+TG+IGDGKIFV ++ +VIRIRTGETG DA+ Sbjct: 61 VEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRIRTGETGLDAI 112 >SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhizobium meliloti Length = 112 Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/112 (69%), Positives = 95/112 (84%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK++ AIIKPFKLDEVREAL+A+G+QG+TVTEVKG+GRQKGHTE+YRG EY V FLPK K Sbjct: 1 MKIVMAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 +E AV IV+RA+EAI +AA+TG+IGDGKIFV + +RIRTGET +AL Sbjct: 61 VEIAVATEIVDRAVEAIASAAKTGQIGDGKIFVYSIDHAVRIRTGETDSEAL 112 >CC1968 Non COG Length = 112 Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/112 (71%), Positives = 94/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK I A+IKPFKLDEV+EAL +GVQG+TV E KG+GRQKGHTELYRGAEYVVDFLPK K Sbjct: 1 MKKIEAVIKPFKLDEVKEALQDMGVQGMTVLEAKGYGRQKGHTELYRGAEYVVDFLPKIK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 +E V+D+ +E ALEAI AARTG+IGDGKIFV ++ +VIRIRTGE G A+ Sbjct: 61 VEVVVEDSQLEPALEAITRAARTGRIGDGKIFVSEIAEVIRIRTGENGPAAV 112 >AGc4999 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 116 Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 76/112 (67%), Positives = 94/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK++ AIIKPFKLDEVREAL+ +G+QG+TVTEVKG+GRQKGHTE+YRG EY V FLPK K Sbjct: 5 MKIVMAIIKPFKLDEVREALTGVGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLK 64 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 IE AV +V++A+EAI +AA+TG+IGDGKIFV + +RIRTGET +AL Sbjct: 65 IEIAVPSDVVDKAVEAIASAAKTGQIGDGKIFVYSIEQAVRIRTGETNTEAL 116 >mll4247 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhizobium loti Length = 112 Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 79/112 (70%), Positives = 94/112 (83%) Query: 1 MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60 MK++ AIIKPFKLDEVREAL+A+G+QG+TVTEVKG+GRQKGHTE+YRGAEY V FLPK K Sbjct: 1 MKIVMAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIK 60 Query: 61 IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112 IE AV V++A+EAI AA+TG+IGDGKIFV + +RIRTGET DAL Sbjct: 61 IEVAVSADTVDKAVEAITAAAKTGQIGDGKIFVFGIDQAVRIRTGETDTDAL 112