BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0517.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum 285 7e-77 Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glut... 154 2e-37 SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus... 149 6e-36 FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum 142 6e-34 AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa... 141 1e-33 VC1856 [R] COG0730 Predicted permeases Vch Vibrio cholerae 140 3e-33 YPO2753 [R] COG0730 Predicted permeases Ype Yersinia pestis 136 5e-32 CC0372 Non COG 136 5e-32 PM0361 [R] COG0730 Predicted permeases Pmu Pasteurella multocida 135 9e-32 STM2382 [R] COG0730 Predicted permeases Sty Salmonella typhimuri... 134 1e-31 >RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum Length = 252 Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 145/252 (57%), Positives = 183/252 (72%) Query: 2 LDYLILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAI 61 +D+++L A F+AGLIDAV GGGGLV +P LFS +P PATL+GTNK+ + GT+ AA Sbjct: 1 MDFVLLAVAGFLAGLIDAVAGGGGLVQIPALFSAYPNLAPATLIGTNKLASMSGTATAAA 60 Query: 62 NFARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDF 121 + R V + W PA + AF S GA+ +THIP + +R+ALPFVL+ + +YT+ KKD Sbjct: 61 RYGRTVRIYWGATAPAVVTAFLCSLLGAWALTHIPAEPLRRALPFVLVLLLVYTVAKKDL 120 Query: 122 GTTHAPTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKF 181 G HAP+L+G RE A L G +GFYDGVFGPGTGSFL+ +FVRVF YDFL ASA+ K Sbjct: 121 GAEHAPSLAGWRERGVALLAGAIIGFYDGVFGPGTGSFLMIVFVRVFGYDFLHASASTKI 180 Query: 182 VNVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGV 241 VN+ATN+AAL GHV WQLGL+MAV NV G+ G+ LA+KHGS FVRK+F+ VV Sbjct: 181 VNLATNVAALLLLASKGHVWWQLGLVMAVANVLGNQAGSYLALKHGSRFVRKMFIAVVLA 240 Query: 242 LILKSGYDAFLR 253 LILK+ YDAFLR Sbjct: 241 LILKTAYDAFLR 252 >Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glutamicum Length = 260 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 135/237 (56%) Query: 6 ILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFAR 65 IL A VAG IDAV+GGGGLVL+P + +V P P T L +NK+ V GT++AA R Sbjct: 12 ILIAGAAVAGWIDAVIGGGGLVLIPLILAVMPQLAPVTALASNKLAAVTGTASAAFTLVR 71 Query: 66 KVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTH 125 +V + + A S GA + I ++R + +++ V L + K +FGT Sbjct: 72 RVKPDKKLLALYVLVAAVCSGAGALAASLIDKQIMRPLIIVLMLVVGLIVVFKPNFGTGE 131 Query: 126 APTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVNVA 185 + L + + A + G + YDG+FGPGTG FL+ F + S +FLS++A AK VN A Sbjct: 132 SKALPTGWKRWAAIVAVGLIAAYDGIFGPGTGMFLIMAFTALLSQNFLSSAAMAKVVNTA 191 Query: 186 TNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVL 242 TNL AL F GH+ W LGL++AV NVAG+ +G + + G+ +R L +V V+ Sbjct: 192 TNLGALIVFIIGGHMWWTLGLVLAVANVAGAQLGARTVLGGGTRLIRYALLTLVVVM 248 >SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus N315 Length = 256 Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 5/239 (2%) Query: 12 FVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFARKVAVRW 71 F+A ID+VVGGGGL+ P L ++ P+ LGTNK+ G+ + I F R V Sbjct: 16 FIAAFIDSVVGGGGLISTPALLAI--GLPPSVALGTNKLASSFGSLTSMIKFIRSGKVDL 73 Query: 72 STVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTHAPT-LS 130 V F S GAY+ T +P+ +++ + L +V ++TL KKD+G T T + Sbjct: 74 FVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFT 133 Query: 131 GSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVNVATNLAA 190 + I +AAL +GFYDG G GTGSF++F+ + VF +DFLSA+ AK +N A+N+ A Sbjct: 134 FKKAIIFAALFI-LIGFYDGFVGGGTGSFMLFVLL-VFGFDFLSAAGNAKVLNFASNIGA 191 Query: 191 LCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVLILKSGYD 249 L F G V + +GL+MA+ +AGS G A+K G +V+ LF+++ +LILK+ +D Sbjct: 192 LVLFMVLGQVDYVIGLIMAISMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFD 250 >FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum Length = 254 Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 145/256 (56%), Gaps = 12/256 (4%) Query: 1 VLDYLILCGAAFVAGLIDAVVGGGGLVLVPTLFSV-FPTTTPATLLGTNKVTGVMGTSAA 59 ++ +LIL F+A ++DA+ GGGGL+ +P F+V FP P LGTNK++ + T A+ Sbjct: 5 IVKFLILAVFCFIAAVVDAISGGGGLISLPAYFAVGFP---PHMALGTNKLSAFLSTFAS 61 Query: 60 AINFARKVAVRWSTVTPAAMAAFAFSFFGAY--VVTHIPTDLIR-KALPF-VLIAVALYT 115 A F + V V+ FAFS GA V T + D K + F +LI V LY Sbjct: 62 AFKFWKAKKVNVEIVSKL----FAFSLAGAVLGVKTAVSIDTKYFKPISFGILILVFLYA 117 Query: 116 LKKKDFGTTHAPTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSA 175 LK K G + + + I ++ +GFYDG GPGT +FL+F +++F DF SA Sbjct: 118 LKNKSLGENNYYKGTTPKTIILGKIMAFCLGFYDGFLGPGTAAFLMFCLIKIFKLDFSSA 177 Query: 176 SAAAKFVNVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLF 235 S K +N+++N A+L F + G + W G+ +A+ G+++G++LA+ G+ F++ +F Sbjct: 178 SGNTKILNLSSNFASLVVFAFLGKLNWAYGISIAIVMTFGAIIGSRLAILKGNKFIKPVF 237 Query: 236 LVVVGVLILKSGYDAF 251 LVV VLILK + F Sbjct: 238 LVVTIVLILKMSVEIF 253 >AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 288 Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 4 YLILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINF 63 +++L A AG ID++ GGGGL+ +P + + P LGTNK+ G+++A + + Sbjct: 30 FIVLFCVAIFAGFIDSIAGGGGLITIPAMMIM--GIAPLDTLGTNKLQAQFGSASATLAY 87 Query: 64 ARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGT 123 AR+ V P + A A GA +P DL+R +PF+LI +ALY K Sbjct: 88 ARRGHVNLKEQLPMGLMAMAGGMLGALTAAFVPADLLRTIMPFLLITIALYFALKPQLSD 147 Query: 124 THAPTLSGSREI---FYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAK 180 + R I + ++ +GFYDGVFGPG GSF + FV + + L A+A K Sbjct: 148 -----IDSHRRITPFVFGLMVAPLIGFYDGVFGPGAGSFYMLAFVALAGFGMLKATAHTK 202 Query: 181 FVNVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLV 237 +N+ +N F G V+W+LGL M + G+ VG++ AMK+G+ +R L +V Sbjct: 203 LLNLGSNFGGFVVFAMGGAVLWKLGLAMGLGQFIGAQVGSRFAMKNGAKIIRPLLVV 259 >VC1856 [R] COG0730 Predicted permeases Vch Vibrio cholerae Length = 259 Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 138/248 (55%), Gaps = 3/248 (1%) Query: 5 LILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFA 64 ++L AF+AG IDAV GGGG++ VP L S+ P LGTNK+ +S AA + Sbjct: 11 MVLALVAFIAGFIDAVAGGGGMLTVPALLSL--GLPPHLALGTNKLAATFASSTAAWTYY 68 Query: 65 RKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTT 124 R+ + A +A + G V I TD +RK LP +++A ALYT+ + T Sbjct: 69 RQKLFDPACWKRAFIATLIGAILGTLAVDAISTDWLRKVLPLIILAAALYTVLHRPHQTE 128 Query: 125 HAPTLSGSREIFYAALIGG-AVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVN 183 + T ++ ++ G +GFYDG+ GPGTG+F + ++ ++ L AS AK +N Sbjct: 129 QSVTPEPCPKLHRKQILQGIGLGFYDGLAGPGTGAFWTVSSMALYRFNILLASGLAKAMN 188 Query: 184 VATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVLI 243 + +N +L F GH+ W LGL M V +AG+ VG A++ G+ F+R LF++VV +L Sbjct: 189 LTSNFTSLVTFALLGHIDWLLGLTMGVCLMAGAYVGAHSAIRFGAPFIRPLFILVVTILA 248 Query: 244 LKSGYDAF 251 K YDA+ Sbjct: 249 GKLAYDAW 256 >YPO2753 [R] COG0730 Predicted permeases Ype Yersinia pestis Length = 268 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 6/245 (2%) Query: 6 ILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFAR 65 IL A +AG ID++ GGGGL+ VP L +V PA L TNK+ V G+ +A++ F R Sbjct: 13 ILFAVALLAGFIDSIAGGGGLLTVPALLAV--GLPPAQALATNKLQSVGGSFSASLYFIR 70 Query: 66 KVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTT- 124 + AV S GA +V ++ D++R+ LP ++I + +Y L G Sbjct: 71 RGAVNLKQQKLTIALTLVGSMLGAILVQYMRADILRQILPLLVIGIGVYFLLTPRLGVVD 130 Query: 125 HAPTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVNV 184 LS + +A + GG +GFYDG FGPG GSF FV + ++ ++A AK +N Sbjct: 131 QQRRLS---ALPFALIAGGGIGFYDGFFGPGAGSFYALAFVTLCGFNLAKSTAHAKVLNF 187 Query: 185 ATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVLIL 244 +NL L +F G V+W +GL+M V V G+ +G + + G +R + +VV V+ Sbjct: 188 TSNLGGLIFFIIGGKVVWSIGLVMLVGQVLGARLGAHMVLTRGQKLIRPMIVVVSFVMSC 247 Query: 245 KSGYD 249 K YD Sbjct: 248 KLLYD 252 >CC0372 Non COG Length = 268 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 14/240 (5%) Query: 11 AFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFARKVAVR 70 A +AG +DA+ GGGGL+ +P L +P LGTNK+ G + ++ FAR+ + Sbjct: 23 AALAGALDAIAGGGGLITLPALL--LAGLSPVQALGTNKLQGAISALSSTSAFARRGLID 80 Query: 71 WSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALY-----TLKKKDFGTTH 125 W T P A A+ GA + + + +R +P +LIA+ALY +K +D Sbjct: 81 WKTALPVAGASALAGLGGALCASLLSPEFLRAVVPLMLIAIALYFGLSRAIKAEDVTPRM 140 Query: 126 APTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVNVA 185 A I +A + +GFYDG+FGPG G+F + V + Y L A+A K N A Sbjct: 141 A-------LIPFACFVAPLIGFYDGIFGPGAGAFYMVAIVTLLGYGALKATAHTKLANAA 193 Query: 186 TNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVLILK 245 +NL +L F G V+W +GL+MA G+ VG++LAM+ G +R L +V+ + +K Sbjct: 194 SNLGSLVLFTLKGAVVWPVGLVMAAGAFIGAQVGSRLAMRFGPKLIRPLLVVISCAMAVK 253 >PM0361 [R] COG0730 Predicted permeases Pmu Pasteurella multocida Length = 254 Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 10/247 (4%) Query: 6 ILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFAR 65 +L A VAG IDA+ GGGGL+ +P L + PA LGTNK+ G+ +A++ F R Sbjct: 10 LLFAVALVAGFIDAIAGGGGLITIPAL--LMTGMPPALALGTNKLQACGGSFSASLYFLR 67 Query: 66 KVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTH 125 + AV + V + F + G ++ + + +I+K LPF+++A+ LY L G Sbjct: 68 QRAVNLAEVWLILLMTFIGASLGTVLIQLVDSAIIKKVLPFLILAIGLYFLFSPTLGNED 127 Query: 126 APTLSGSREIFYAALI---GGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFV 182 + I Y A G +GFYDG FGPGTGS L FV + ++ A+A AK + Sbjct: 128 R-----QKRISYLAFAFTAGLGIGFYDGFFGPGTGSLLSLAFVMLLGFNLTKATAHAKVL 182 Query: 183 NVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVL 242 N +N+A+L +F G ++W +G M G+ +G K+ + G +R + +V+ ++ Sbjct: 183 NFTSNVASLIFFLIGGQIMWSVGFAMMAGQFIGANLGAKMVLSKGKTLIRPMVVVMSFIM 242 Query: 243 ILKSGYD 249 +K YD Sbjct: 243 TMKMAYD 249 >STM2382 [R] COG0730 Predicted permeases Sty Salmonella typhimurium LT2 Length = 269 Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 10/243 (4%) Query: 11 AFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAINFARKVAVR 70 A +AG ID++ GGGGL+ +P L + +PA L TNK+ G+ ++++ F R+ V Sbjct: 22 AVLAGFIDSIAGGGGLLTIPALMAA--GMSPANALATNKLQACGGSLSSSLYFIRRKVVN 79 Query: 71 WSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTHAPTLS 130 + + F S GA +V H+ D++R+ LP ++I + LY L G Sbjct: 80 LAEQKLNILMTFIGSMSGALLVQHVQADILRQILPILVIFIGLYFLLMPKLGEEDR---- 135 Query: 131 GSREIF---YAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFVNVATN 187 R ++ +A + GG VGFYDG FGP GSF FV + Y+ ++A AK +N +N Sbjct: 136 -QRRLYGLPFALIAGGCVGFYDGFFGPAAGSFYALAFVTLCGYNLAKSTAHAKVLNATSN 194 Query: 188 LAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVLILKSG 247 + L F G VIW G +M V G+ +G++L + G +R + ++V V+ + Sbjct: 195 VGGLLLFIIGGKVIWATGFVMLVGQFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSARLL 254 Query: 248 YDA 250 YD+ Sbjct: 255 YDS 257