BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0437.p (232 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4862 [E] COG0410 ABC-type branched-chain amino acid transport ... 301 6e-82 YPO1191 [E] COG0410 ABC-type branched-chain amino acid transport... 301 7e-82 RSc2037 [E] COG0410 ABC-type branched-chain amino acid transport... 282 6e-76 AGc4373 [E] COG0410 ABC-type branched-chain amino acid transport... 259 5e-69 mll0756 Non COG 256 3e-68 all1947 [E] COG0410 ABC-type branched-chain amino acid transport... 236 5e-62 sll0374 [E] COG0410 ABC-type branched-chain amino acid transport... 234 1e-61 BH0247 [E] COG0410 ABC-type branched-chain amino acid transport ... 232 5e-61 SMb21707 [E] COG0410 ABC-type branched-chain amino acid transpor... 211 9e-55 DRA0324 [E] COG0410 ABC-type branched-chain amino acid transport... 211 1e-54 >PA4862 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pae Pseudomonas aeruginosa Length = 232 Score = 301 bits (772), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 143/232 (61%), Positives = 184/232 (79%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQV++L+QYYG +H LRG+S + + G+V LLGRNGVGKTTLL+CLMG++P +G V + Sbjct: 1 MLQVDKLHQYYGGSHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGLVPAREGQVAW 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG+ +T L+PHQR + GIAYVPQGREIF RLTVEEN+LMG++ S R A + +YELF Sbjct: 61 EGRSLTGLRPHQRVRAGIAYVPQGREIFPRLTVEENLLMGLSRFSARDARAVPDFIYELF 120 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVL+EM RRGGDLSGGQQQQLAI RAL ++P+L+ILDEPTEGIQPS+IK+IG V+ L Sbjct: 121 PVLREMKQRRGGDLSGGQQQQLAIGRALASQPRLLILDEPTEGIQPSVIKEIGAVVRSLA 180 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 RGD+ ILL EQ++DFA ELAD ++VM+RGE+V G M+ E V+ +A+ Sbjct: 181 ARGDMAILLVEQFYDFAAELADQYLVMARGEIVQQGRGRDMESEGVRGLVAI 232 >YPO1191 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 232 Score = 301 bits (771), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 140/232 (60%), Positives = 187/232 (80%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQVNEL+QYYG +H LRG++ + + G+V LLGRNGVGKTTLLKCL+G++P+ G++ + Sbjct: 1 MLQVNELDQYYGGSHILRGLTFEARVGEVTCLLGRNGVGKTTLLKCLIGLVPIKNGSITW 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG++I+ PHQR K GIAYVPQGREIF RLTVEEN+L+G++ G ++ ++ +Y+LF Sbjct: 61 EGKNISHQSPHQRVKEGIAYVPQGREIFPRLTVEENILLGLSRFPGSQSKSVPEHIYQLF 120 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVL+EM HRRGGDLSGGQQQQLAI RAL +P+L+ILDEPTEGIQPS+IK+IG VI L Sbjct: 121 PVLQEMKHRRGGDLSGGQQQQLAIGRALACQPRLLILDEPTEGIQPSVIKEIGGVIKKLA 180 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 +GD+ ILL EQ++DFA ELAD ++VMSRG++V G M+ +DV++ +A+ Sbjct: 181 AQGDMAILLVEQFYDFAAELADNYLVMSRGKIVQRGLGIDMEHDDVRRLVAI 232 >RSc2037 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 230 Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 176/233 (75%), Gaps = 4/233 (1%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQ+ +LNQYYG +H LR VS +V GK+ +LLGRNGVGKTTLLKCLMGVLP G + + Sbjct: 1 MLQIQQLNQYYGGSHILRNVSFEVPAGKLTALLGRNGVGKTTLLKCLMGVLPATSGTIDW 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRA-STIKGEVYEL 119 EG+ I KL ++R G+AYVPQGREIF RLTVEEN+L+G A RRA S + +Y L Sbjct: 61 EGRAIHKLPAYERVSRGLAYVPQGREIFPRLTVEENLLIGAAA---RRAPSGVPDSIYAL 117 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FPVL +M RRGGDLSGGQQQQLAI RAL++EP+L+ILDEPTEGIQPS+I++IGR + L Sbjct: 118 FPVLAQMKGRRGGDLSGGQQQQLAIGRALMSEPRLLILDEPTEGIQPSVIQEIGRTLRRL 177 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 + +LL EQY+DFAR +AD +VVM RGEV+A G MD + V++ +AV Sbjct: 178 VDEFGMSVLLVEQYYDFARRIADRYVVMRRGEVIAQGDGADMDADGVRELVAV 230 >AGc4373 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 231 Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 163/232 (70%), Gaps = 1/232 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 ML V +N +YGAA LRGVSL + GK+ +LGRNGVGK++LL+ + G P + G++ F Sbjct: 1 MLTVENINLHYGAAQALRGVSLKAEMGKITCVLGRNGVGKSSLLRAVTGQQPTSAGSISF 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 +G + L P+ RAK G+ YVPQGREIF L+V+EN+ G A L R+ I +++ LF Sbjct: 61 DGAPLDGLAPYHRAKRGVGYVPQGREIFPLLSVQENLESGYAPLP-RKERFIPDDIFSLF 119 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVL+ ML RRGGDLSGGQQQQLAI RAL+ PK+++LDEPTEGIQPSIIKDIGR I LR Sbjct: 120 PVLQSMLGRRGGDLSGGQQQQLAIGRALVTRPKILVLDEPTEGIQPSIIKDIGRAIKYLR 179 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 + ILL EQY DF RELAD +M RGE+V G + +D + ++HL V Sbjct: 180 DSTGMAILLVEQYLDFCRELADYVYIMDRGEIVHEGLAETLDTPEARRHLTV 231 >mll0756 Non COG Length = 231 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 163/232 (70%), Gaps = 1/232 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 ML+V+ +YGAA LRGVSL GK+ +LGRNGVGKT+L++ ++G + G+V F Sbjct: 1 MLEVSNATLHYGAAQALRGVSLKAGAGKITCVLGRNGVGKTSLMRSIVGHHRLTSGSVAF 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG+ + + + RA+ GIA+VPQGREIF LTV EN+ G A L R + V+ELF Sbjct: 61 EGKALDRSAAYDRARSGIAFVPQGREIFPLLTVRENLESGFAPLK-RADRNVPAHVFELF 119 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVLK+ML RRGGDLSGGQQQQLAI RAL+ PKL++LDEPTEGIQPSIIKDIGR I LR Sbjct: 120 PVLKQMLGRRGGDLSGGQQQQLAIGRALVMRPKLLVLDEPTEGIQPSIIKDIGRAIRFLR 179 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 + I +LL EQY DF RELAD +M RG++V G + +D DV+K L V Sbjct: 180 DQAGIAVLLVEQYLDFCRELADEVNIMDRGQIVHTGPAEDLDRADVRKFLTV 231 >all1947 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 232 Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 162/233 (69%), Gaps = 2/233 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 ML ++ LN YYG +H LR V L V G+++ L+GRNGVGKTTLLK +MG+L G + Sbjct: 1 MLNISNLNVYYGESHILRNVDLTVPNGQMICLIGRNGVGKTTLLKTIMGLLKPRSGTINL 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGM-ATLSGRRASTIKGEVYEL 119 G I P QRAK+GI YVPQGR+I RLTV+EN+L+G+ A + + I E++ L Sbjct: 61 AGNLINSKSPDQRAKMGIGYVPQGRDIIPRLTVKENLLLGLEARQKQVKKAEIPEEIFSL 120 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FPVLK ML R GGDLSGGQQQQLAIARAL+ +P+L++LDEPTEGIQPSII +I + + Sbjct: 121 FPVLKTMLSRMGGDLSGGQQQQLAIARALMGQPQLLVLDEPTEGIQPSIILEIEAAVRRI 180 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 + I +LL EQ+ F R+ AD + M +G +VA+G+ D++ + +++ LAV Sbjct: 181 IETTGISVLLVEQHLHFVRQ-ADYYYAMQKGAIVASGSTDELSQDVIQRFLAV 232 >sll0374 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Syn Synechocystis Length = 249 Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 163/234 (69%), Gaps = 3/234 (1%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQ+++LN YYG +H LR V + + G+++ L+GRNGVGKTTLLK +MG+L G V++ Sbjct: 17 MLQISDLNVYYGESHILRNVDMSIAPGQMVCLIGRNGVGKTTLLKTIMGLLSPRSGYVVY 76 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGR--RASTIKGEVYE 118 + + + +RA+LGI YVPQGREI RLTV+EN+L+G+ + + R I E++E Sbjct: 77 GDRQLNSVPTDKRARLGIGYVPQGREIIPRLTVQENLLLGLEACADKSQRQKGIPDEIFE 136 Query: 119 LFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISL 178 LFPVLK ML R GGDLSGGQQQQLAIARAL+ +PKL++LDEPTEGIQPSII +I + Sbjct: 137 LFPVLKTMLSRWGGDLSGGQQQQLAIARALMGQPKLLLLDEPTEGIQPSIILEIEAAVKR 196 Query: 179 LRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 + I +LL EQ+ F R+ AD + M +G +VA+G + E ++K LAV Sbjct: 197 IIAATGISVLLVEQHLHFVRQ-ADRYYAMQKGGIVASGETQTLSQEVIQKFLAV 249 >BH0247 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Bha Bacillus halodurans Length = 230 Score = 232 bits (592), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 117/233 (50%), Positives = 164/233 (70%), Gaps = 4/233 (1%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQ++ L Y + +R VSL VQ GKV+ LLGRNGVGK+T++K ++G+L V +G++ Sbjct: 1 MLQLSNLEVAYDESTVIRDVSLSVQPGKVVCLLGRNGVGKSTIMKTIIGLLQVKRGSIQL 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG+D+TK P RA+ GI YVPQGR+IF LTV EN+L+G+ + I +Y F Sbjct: 61 EGEDVTKKSPTYRARRGIGYVPQGRDIFPFLTVHENLLLGLEACDTKE-QKIDESLYAYF 119 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVI-SLL 179 P+LKEM +RRGGDLSGGQQQQLA+ARAL+A PK ++LDEPTEG+QP+I+ DI +VI + Sbjct: 120 PILKEMKNRRGGDLSGGQQQQLALARALVANPKFLLLDEPTEGVQPNIVYDIQKVIMDVK 179 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 +Q D ILL EQ DFA+++ D F V+ +G + G D + ++K++L+V Sbjct: 180 KQSKDQAILLVEQSIDFAKQVGDYFYVVDKGRIAYEG--DSLIEAEIKQYLSV 230 >SMb21707 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 231 Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 146/233 (62%), Gaps = 3/233 (1%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 ML V ++ +YGAA LR VS + GK+ +LGRNGVGK++LL+ + G PV G + F Sbjct: 1 MLNVENVSLHYGAAQALRDVSFKAEMGKITCVLGRNGVGKSSLLRAVAGQHPVTSGTISF 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRAS-TIKGEVYEL 119 G + + P +RAK G+ YVPQGREIF LTV+EN+ G A L RRA +I +++ L Sbjct: 61 NGAPLDGMAPFRRAKQGVGYVPQGREIFPLLTVKENLETGFAPL--RRAQRSIPDDIFSL 118 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FPVL+ ML RR IARAL+ PK+++LDEPTEGIQPSIIKDIGR I L Sbjct: 119 FPVLQTMLGRRAATFRAASSSSSRIARALVTRPKILVLDEPTEGIQPSIIKDIGRAIKYL 178 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 R + ILL EQY DF RELAD +M RG V G + +D ++HL V Sbjct: 179 RDSTGMAILLVEQYVDFCRELADHVYIMDRGAFVHEGPPETLDTPQARRHLTV 231 >DRA0324 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 234 Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 ML++ ++ YG + L + L+V+ + ++L+GRNGVGK+TLL+ + G+ PV G V Sbjct: 1 MLKLEHVSAAYGQSPVLFDIDLEVRDAEAVALIGRNGVGKSTLLRTISGLHPVTAGGVRL 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRAST--IKGEVYE 118 G+ + RA+ G+AYVPQGR +F+ LTVEEN+LMG++ L GR A+ I VY+ Sbjct: 61 GGEAVEHAPAFARARAGLAYVPQGRGLFSHLTVEENLLMGLSALGGRPATKKEIPPLVYD 120 Query: 119 LFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISL 178 LFP+ +M R+ G+LSGGQQQQ+AI RAL+ P ++LDEPTEGIQPSI++DI + Sbjct: 121 LFPICHDMRARKAGNLSGGQQQQVAIGRALVTRPAYLLLDEPTEGIQPSIVQDIEAALGR 180 Query: 179 LRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 +R + +LL EQY DFA AD + V+ RG VV +G + V+++L+V Sbjct: 181 IRAELRVAVLLVEQYLDFAWAFADRYYVLQRGRVVESGLTADVQPSAVQRYLSV 234