BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0417.p         (386 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3532 [GEPR] COG0477 Permeases of the major facilitator superfa...    65   4e-10
BMEI0267 [GEPR] COG0477 Permeases of the major facilitator super...    63   1e-09

>PA3532 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 383

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query: 19  KIAIPFLFLLLGVVFSTWAARIPAIRDQLQLDAATLALVLLCGGIGAVGSFPLAAWITGH 78
           ++A  + F + G+V      RIPA+++Q QLD   L   LL  G+GA+ +FPL+ ++   
Sbjct: 10  RLACIYFFAMAGLVIGNLMGRIPALKEQTQLDERALGQALLGVGVGALTAFPLSGFLVQR 69

Query: 79  YGARHSSLYAGLALLFSLPLLALAPGLWTLMAVCTLYGAASSCFDVAIN 127
            G+R   +   L +L   PLL L+ G W L     + G + +  DVA+N
Sbjct: 70  IGSRSVVIGGCLIMLLVFPLLGLSQGWWQLALAFYVLGVSFAGMDVAMN 118


>BMEI0267 [GEPR] COG0477 Permeases of the major facilitator superfamily Bme
           Brucella melitensis
          Length = 397

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 63/111 (56%)

Query: 18  RKIAIPFLFLLLGVVFSTWAARIPAIRDQLQLDAATLALVLLCGGIGAVGSFPLAAWITG 77
            +IA+  LFL+ G +F  WA +IP   ++L LD+A + L++L  G+G++   P+A  ++ 
Sbjct: 21  ERIAVALLFLMNGYIFGGWAPKIPEFAERLGLDSAGMGLMILVCGLGSLAMMPVAGALSA 80

Query: 78  HYGARHSSLYAGLALLFSLPLLALAPGLWTLMAVCTLYGAASSCFDVAINA 128
           H G+        LA + +L ++ L P + T + V   +G   +  DV++NA
Sbjct: 81  HRGSGIVVRIFALAFIPALLIITLVPNVVTAVIVMLYFGGTMAAMDVSMNA 131