BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0405.p (394 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0279 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 421 e-117 BMEI1923 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melite... 405 e-113 PA2015 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 395 e-110 SMb21121 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium m... 395 e-109 AGl2707 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 387 e-107 mll7732 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti 360 3e-99 CC2172 Non COG 345 8e-95 CAC2711 [I] COG1960 Acyl-CoA dehydrogenases Cac Clostridium acet... 232 1e-60 BS_mmgC [I] COG1960 Acyl-CoA dehydrogenases Bsu Bacillus subtilis 230 5e-60 BH3799 [I] COG1960 Acyl-CoA dehydrogenases Bha Bacillus halodurans 223 4e-58 >RSc0279 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 393 Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/262 (78%), Positives = 230/262 (87%) Query: 1 MIHLPGLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGIT 60 MI LPGL FD G DI LR AV +A +E+APRA IDRSDQFPMD WK++GDLGVLGIT Sbjct: 1 MIELPGLRFDLGVDIEMLRSAVRDWAQAELAPRAEAIDRSDQFPMDAWKQMGDLGVLGIT 60 Query: 61 VSEEYGGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRL 120 V+EEYGG+G+GYLAH+IAMEEISRASASVGLSYGAHSNLCVNQI RNG QK KYLP+L Sbjct: 61 VAEEYGGSGMGYLAHMIAMEEISRASASVGLSYGAHSNLCVNQIHRNGTPAQKAKYLPKL 120 Query: 121 ISGDFIGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDL 180 +SG++IGALAMSEPNAGSDVVSMKLRA+ +GDRYVLNG+KMWITNGPD DVLVVY KT+ Sbjct: 121 VSGEWIGALAMSEPNAGSDVVSMKLRAECRGDRYVLNGTKMWITNGPDCDVLVVYGKTEP 180 Query: 181 DVGARGMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNV 240 ++GARGMTAF+VEKG KGFSVAQKLDKLGMRGSHTGELVF + EVP ENVLG G V Sbjct: 181 ELGARGMTAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFDNVEVPAENVLGEENGGTRV 240 Query: 241 LMSGLDFERSVLSGGPLGIMQA 262 LMSGLD+ER+VLSGGP+GIMQA Sbjct: 241 LMSGLDYERAVLSGGPIGIMQA 262 >BMEI1923 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melitensis Length = 382 Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/256 (75%), Positives = 225/256 (87%) Query: 7 LSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYG 66 ++F GE+I ALR+ V FA S IAP AAE DR++QFPM LW++ G+LGVLGIT E+YG Sbjct: 1 MNFGLGEEIEALRDTVRRFAESRIAPLAAETDRNNQFPMHLWREFGELGVLGITAPEDYG 60 Query: 67 GAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFI 126 GAG+GYLAH IAMEEISRASAS+GLSYGAHSNLCVNQI RNG+ EQ+ KYLP+LISG+ + Sbjct: 61 GAGMGYLAHCIAMEEISRASASIGLSYGAHSNLCVNQITRNGSPEQRAKYLPKLISGEHV 120 Query: 127 GALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARG 186 GALAMSEP AGSDVVSMKL A+K+GDRYVLNG+KMWITNGPDADVLVVYAKTDL G RG Sbjct: 121 GALAMSEPGAGSDVVSMKLAAEKRGDRYVLNGNKMWITNGPDADVLVVYAKTDLSAGPRG 180 Query: 187 MTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLD 246 ++AF++EKG+KGFS AQKLDKLGMRGS+T ELVF+DCEVP EN+LG G+GVNVLMSGLD Sbjct: 181 ISAFIIEKGFKGFSTAQKLDKLGMRGSNTCELVFEDCEVPAENLLGTEGKGVNVLMSGLD 240 Query: 247 FERSVLSGGPLGIMQA 262 +ER VL+GGPLGIM A Sbjct: 241 YERVVLAGGPLGIMAA 256 >PA2015 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 387 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/258 (73%), Positives = 217/258 (84%) Query: 5 PGLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEE 64 P L+F GE I LR+ V F +E+ PRAA+ID+ +QFPMD+W+K G++G+LGITV EE Sbjct: 4 PSLNFALGETIDMLRDQVRGFVAAELQPRAAQIDQDNQFPMDMWRKFGEMGLLGITVDEE 63 Query: 65 YGGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGD 124 YGG+ LGYLAH + MEEISRASASV LSYGAHSNLCVNQIKRNGN EQK +YLP L+SG+ Sbjct: 64 YGGSALGYLAHAVVMEEISRASASVALSYGAHSNLCVNQIKRNGNAEQKARYLPALVSGE 123 Query: 125 FIGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGA 184 IGALAMSEPNAGSDVVSMKLRAD+ GDR+VLNGSKMWITNGPDA V+YAKTD D GA Sbjct: 124 HIGALAMSEPNAGSDVVSMKLRADRVGDRFVLNGSKMWITNGPDAHTYVIYAKTDADKGA 183 Query: 185 RGMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSG 244 G+TAF+VE+ +KGFS KLDKLGMRGS+T EL+FQD EVPEENVLG V GV VLMSG Sbjct: 184 HGITAFIVERDWKGFSRGPKLDKLGMRGSNTCELIFQDVEVPEENVLGAVNGGVKVLMSG 243 Query: 245 LDFERSVLSGGPLGIMQA 262 LD+ER VLSGGP+GIMQA Sbjct: 244 LDYERVVLSGGPVGIMQA 261 >SMb21121 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium meliloti Length = 387 Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/275 (71%), Positives = 220/275 (80%) Query: 6 GLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEY 65 GL+F GE+I ALR +V FA IAP A + DRS+ FPM LW+++G+LG+LGIT E + Sbjct: 5 GLNFALGEEIDALRASVRRFASERIAPLADDADRSNAFPMSLWREMGELGLLGITADEAH 64 Query: 66 GGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDF 125 GGAGLGYLAH +AMEEISRASASVGLSYGAHSNLCVNQI RNG QK +YLP+LISG+ Sbjct: 65 GGAGLGYLAHCVAMEEISRASASVGLSYGAHSNLCVNQINRNGKPAQKSRYLPKLISGEH 124 Query: 126 IGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGAR 185 +GALAMSEP AGSDVVSMKL+ADK+GDRYVLNGSKMWITNGPDADVLVVYAKTD G R Sbjct: 125 VGALAMSEPGAGSDVVSMKLKADKRGDRYVLNGSKMWITNGPDADVLVVYAKTDPAAGPR 184 Query: 186 GMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGL 245 G+TAFLVEK + GFS QKLDKLGMRGS+T EL+F DCEVPEENVLGGVG GV VLMSGL Sbjct: 185 GITAFLVEKAFPGFSAGQKLDKLGMRGSNTSELIFTDCEVPEENVLGGVGEGVKVLMSGL 244 Query: 246 DFERSVLSGGPLGIMQAAWMWWCPTCMTASSSARP 280 D+ER VLS GPLGIM A P +P Sbjct: 245 DYERVVLSAGPLGIMAACLDVVVPYLHERKQFGQP 279 >AGl2707 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 421 Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust. Identities = 183/260 (70%), Positives = 222/260 (85%) Query: 10 DHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYGGAG 69 D G +IAALR++ +AFA +IAP A EIDR+D+FP LW ++G+LG+ GITVSEE+GGA Sbjct: 43 DLGPEIAALRDSASAFADDKIAPLATEIDRNDRFPRQLWPQMGELGLHGITVSEEFGGAD 102 Query: 70 LGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFIGAL 129 +GYLAH +AMEEISRASAS+GLSYGAHSNLC+NQI R G +EQK +YLP+L+SGD +G+L Sbjct: 103 MGYLAHCVAMEEISRASASIGLSYGAHSNLCINQIHRWGTDEQKHRYLPKLVSGDHVGSL 162 Query: 130 AMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARGMTA 189 AMSE AGSDVVSM+L+A++KGDRYVLNG+KMWITNG +AD LVVYAKTD+ GARG+TA Sbjct: 163 AMSETEAGSDVVSMRLKAERKGDRYVLNGAKMWITNGHEADTLVVYAKTDMSAGARGITA 222 Query: 190 FLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFER 249 FL+EKG+KGF AQKLDKLGMRGS T ELVF+DCEVPEEN+LG + GV VLMSGLD+ER Sbjct: 223 FLIEKGFKGFRPAQKLDKLGMRGSPTSELVFEDCEVPEENILGRLNDGVTVLMSGLDYER 282 Query: 250 SVLSGGPLGIMQAAWMWWCP 269 +VL+ GP+GIMQAA P Sbjct: 283 AVLAAGPVGIMQAAIDLVLP 302 >mll7732 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti Length = 387 Score = 360 bits (924), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 180/274 (65%), Positives = 213/274 (77%) Query: 7 LSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYG 66 LSF H EDI ALR+ V FA IAP A +IDR ++FP LW++LG LG+LGIT ++G Sbjct: 6 LSFGHDEDIEALRDMVRRFAQDRIAPIAGDIDRQNEFPAHLWRELGALGLLGITADPDFG 65 Query: 67 GAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFI 126 G+G+GYLAH+IA+EEISRASASVGLSYGAHSNLCVNQI R QK K+LP L SG+ + Sbjct: 66 GSGMGYLAHVIAVEEISRASASVGLSYGAHSNLCVNQINRWATPAQKEKFLPPLCSGERV 125 Query: 127 GALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARG 186 GALAMSE AGSDVVS+KLRA+K+ DRYVLNG+KMWITNGPDAD LVVYAKTD + +RG Sbjct: 126 GALAMSESGAGSDVVSLKLRAEKRNDRYVLNGTKMWITNGPDADTLVVYAKTDPERKSRG 185 Query: 187 MTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLD 246 +TAF+VEK GFSVAQKLDKLGMRGS TGELVF++ EVP +NVL GRGV VLMSGLD Sbjct: 186 ITAFIVEKAMTGFSVAQKLDKLGMRGSSTGELVFENVEVPFDNVLHEEGRGVEVLMSGLD 245 Query: 247 FERSVLSGGPLGIMQAAWMWWCPTCMTASSSARP 280 +ER+VL+GGP+G+M A P +P Sbjct: 246 YERTVLAGGPIGLMAACLDVAIPYVHERKQFGQP 279 >CC2172 Non COG Length = 378 Score = 345 bits (886), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 176/256 (68%), Positives = 211/256 (82%), Gaps = 2/256 (0%) Query: 7 LSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYG 66 + F GE A+RE A FA +IAP AA+ID ++ FP +LW +GDLG+ GITV EE+G Sbjct: 1 MDFALGETADAIRETTARFAADKIAPIAAKIDETNSFPRELWVPMGDLGLHGITVEEEFG 60 Query: 67 GAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFI 126 G GLGYL H++AMEE+SRASASVGLSYGAHSNLCVNQI+R EQK +YLP+LISG+ + Sbjct: 61 GLGLGYLEHVVAMEEVSRASASVGLSYGAHSNLCVNQIRRWATPEQKARYLPKLISGEHV 120 Query: 127 GALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARG 186 G+LAMSE AGSDVVSMKLRA++ GDRY+LNG+K WITN P AD LVVYAKT G+RG Sbjct: 121 GSLAMSEAGAGSDVVSMKLRAEQVGDRYILNGTKFWITNAPHADTLVVYAKT--GEGSRG 178 Query: 187 MTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLD 246 +TAF+VEKG KGFSV++KLDK+GMRGS T ELVF+DCE+PEENV+G VG GV VLMSGLD Sbjct: 179 ITAFIVEKGMKGFSVSKKLDKMGMRGSDTAELVFEDCEIPEENVMGPVGGGVGVLMSGLD 238 Query: 247 FERSVLSGGPLGIMQA 262 +ER+VL+ GPLGIMQA Sbjct: 239 YERAVLAAGPLGIMQA 254 >CAC2711 [I] COG1960 Acyl-CoA dehydrogenases Cac Clostridium acetobutylicum Length = 379 Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 116/258 (44%), Positives = 173/258 (67%) Query: 7 LSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYG 66 + F+ + +R+ V FA +E+ P AAEID +++FPM+ KK+G G++GI S+EYG Sbjct: 1 MDFNLTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYG 60 Query: 67 GAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFI 126 GAG L++IIA+EE+S+ + G+ AH++LC + I +G EEQK+KYL L G+ I Sbjct: 61 GAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKI 120 Query: 127 GALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARG 186 GA ++EPNAG+D + + A +GD YV+NGSK++ITNG AD V++A TD G +G Sbjct: 121 GAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKG 180 Query: 187 MTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLD 246 ++AF++EKG+KGFS+ + KLG+R S T ELVF+D VP EN++G G+G + M LD Sbjct: 181 ISAFIIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMIGKEGKGFPIAMKTLD 240 Query: 247 FERSVLSGGPLGIMQAAW 264 R ++ LGI + A+ Sbjct: 241 GGRIGIAAQALGIAEGAF 258 >BS_mmgC [I] COG1960 Acyl-CoA dehydrogenases Bsu Bacillus subtilis Length = 378 Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/263 (44%), Positives = 171/263 (65%) Query: 18 LREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYGGAGLGYLAHII 77 +R+ V FA EIAP A ++++D+FP L KK+G G++GI V E+YGGAG +++I+ Sbjct: 10 MRKMVRDFARKEIAPAAEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAGADVVSYIL 69 Query: 78 AMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFIGALAMSEPNAG 137 A+ EISR SA+VG+ H+++ N I GNEEQK KY+P L SGD +GA A++EP++G Sbjct: 70 AIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSG 129 Query: 138 SDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARGMTAFLVEKGYK 197 SD S++ A KK +Y+LNGSK++ITNG AD+ + +A T D G G++AF+VEK Sbjct: 130 SDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISAFIVEKNTP 189 Query: 198 GFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPL 257 GF+V +K KLG+ GS+T EL+F + EVPE N+LG G G ++ M+ L+ R ++ L Sbjct: 190 GFTVGKKERKLGLYGSNTTELIFDNAEVPEANLLGKEGDGFHIAMANLNVGRIGIAAQAL 249 Query: 258 GIMQAAWMWWCPTCMTASSSARP 280 GI +AA RP Sbjct: 250 GIAEAALEHAVDYAKQRVQFGRP 272 >BH3799 [I] COG1960 Acyl-CoA dehydrogenases Bha Bacillus halodurans Length = 379 Score = 223 bits (569), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 108/247 (43%), Positives = 168/247 (68%) Query: 18 LREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYGGAGLGYLAHII 77 +R+ V FA IAP E++ +D FPM + K++G+LG++GI + E YGGA + + ++II Sbjct: 12 MRKMVRDFAQERIAPFVEEMETNDTFPMHIVKEMGELGLMGIPIPEAYGGAEMDFTSYII 71 Query: 78 AMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFIGALAMSEPNAG 137 A+ E+S+ SA+VG+ H+++ N I G EEQK +++P+L G+++GA ++EP+AG Sbjct: 72 AIHELSKVSATVGVILSVHTSVGTNPILFFGTEEQKSRFIPKLAKGEYLGAFGLTEPSAG 131 Query: 138 SDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARGMTAFLVEKGYK 197 SD ++K A K+GD Y LNGSK++ITNG AD VV+A T+ G +G++AF+VEK Sbjct: 132 SDAANLKTTALKQGDHYRLNGSKVFITNGGAADTYVVFASTNPSAGRKGISAFIVEKETP 191 Query: 198 GFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPL 257 GF+V +K K+G+ GS+T EL+F+D VP+EN+LG G G + M+ L+ R ++ L Sbjct: 192 GFTVGKKEKKMGLHGSNTTELIFEDALVPKENLLGVEGDGYKIAMANLEAGRIGIAAQSL 251 Query: 258 GIMQAAW 264 GI +AA Sbjct: 252 GIAEAAL 258