BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0404.p (142 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0280 [K] COG0789 Predicted transcriptional regulators Rso Ral... 167 8e-42 CC0081 [K] COG0789 Predicted transcriptional regulators Ccr Caul... 110 1e-24 SMc01260 [K] COG0789 Predicted transcriptional regulators Sme Si... 101 5e-22 PA2016 [K] COG0789 Predicted transcriptional regulators Pae Pseu... 101 6e-22 mll1317 [K] COG0789 Predicted transcriptional regulators Mlo Mes... 98 5e-21 AGc2849 [K] COG0789 Predicted transcriptional regulators Atu Agr... 94 8e-20 BMEI0808 [K] COG0789 Predicted transcriptional regulators Bme Br... 91 5e-19 mlr5623 [K] COG0789 Predicted transcriptional regulators Mlo Mes... 88 7e-18 AF0673 [K] COG0789 Predicted transcriptional regulators Afu Arch... 83 1e-16 BMEII0467 [K] COG0789 Predicted transcriptional regulators Bme B... 77 1e-14 >RSc0280 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 165 Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 84/138 (60%), Positives = 102/138 (73%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+R L L QHR L QQ EDL L+EI HE +CR L Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERLLTFLAQHRAVLTQQLEDLNAQLAEIDQHETQCRHL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARGGAAKAPKRRKAA 165 >CC0081 [K] COG0789 Predicted transcriptional regulators Ccr Caulobacter vibrioides Length = 159 Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 87/129 (67%), Gaps = 9/129 (6%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 T+TI +L EF TPRA+RFYED G+LNP REG+ +RVY ++R RL+L LRGKR+G Sbjct: 10 TFTIRQLCNEFKATPRALRFYEDKGLLNPAREGL---NRVYSHKDRVRLQLILRGKRVGL 66 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L+EI++L+D+Y+ + AQ+ R L ++ LEQQR+D++ L E+ E C +L Sbjct: 67 SLTEIRELLDLYDENDEGAAQMARSLKKFRERATALEQQRDDIDNALIEL---REACNRL 123 Query: 123 ---LTDGKP 128 LT+ +P Sbjct: 124 ERRLTEIRP 132 >SMc01260 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium meliloti Length = 128 Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 79/116 (68%), Gaps = 3/116 (2%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 Y+ITEL EF I+ R +RFYED G+++P+R G R R++ +R +K LRG+R+GFT Sbjct: 5 YSITELTREFGISTRTLRFYEDEGLIHPERRG---RTRLFRPADRHLIKEILRGRRIGFT 61 Query: 64 LSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEEC 119 ++EI+++I +Y+ P QLQ + +++ RE L Q+R+D+E TLSE+ EE C Sbjct: 62 IAEIREIIQVYKDPPGEMGQLQLLIKRVEEKREDLRQKRKDIEDTLSELDNVEEAC 117 >PA2016 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas aeruginosa Length = 134 Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 5/123 (4%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 TYTI++LA E IT RAIRFYE+ G+L+P+R G + R+Y R++ LKL LRGKR+GF Sbjct: 4 TYTISDLARELDITTRAIRFYEEQGLLSPERRG---QERIYSPRDKVSLKLILRGKRIGF 60 Query: 63 TLSEIKDLIDMYE-SPKD-TQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120 +L+E ++LI++Y+ P Q QL L + + R +LEQQ D+E E+ EE CR Sbjct: 61 SLAECRELIELYDPDPSSGNQKQLNTMLEKIAERRAQLEQQLLDIEQMQLELDTAEERCR 120 Query: 121 QLL 123 L Sbjct: 121 AAL 123 >mll1317 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 128 Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 79/122 (64%), Gaps = 3/122 (2%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 Y+ITEL EF ++ R +RFYED G++ P R G R R++ +R ++ +RGKRLGF+ Sbjct: 5 YSITELTREFDVSTRTLRFYEDEGLVQPVRRG---RTRLFRPSDRHLIRQIMRGKRLGFS 61 Query: 64 LSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQLL 123 ++EI+++I MY+ P QL+ + +++ RE L Q+R DLE TL+E+ EE C + L Sbjct: 62 INEIREIIQMYKEPPGEVGQLKLMIKRIEEKREDLRQKRRDLEETLAELDQAEESCVERL 121 Query: 124 TD 125 + Sbjct: 122 VE 123 >AGc2849 [K] COG0789 Predicted transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 128 Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 3/116 (2%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 Y+ITEL EF ++ R +RFYED G+++P+R G R R++ + +R ++ LRG+R+GFT Sbjct: 5 YSITELTREFGVSTRTLRFYEDEGLIHPERRG---RTRLFRSADRRLIQEILRGRRIGFT 61 Query: 64 LSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEEC 119 ++EI+++I +Y+ P QL + + + R L Q+R+D+E TL+E+ EE C Sbjct: 62 IAEIREIIHVYKEPPGESGQLVLLMKKVDEKRADLRQKRKDIEETLAELDNVEEAC 117 >BMEI0808 [K] COG0789 Predicted transcriptional regulators Bme Brucella melitensis Length = 128 Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 3/116 (2%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 YTITEL EF I+ R +RFYED G++ P R G R R++ +R LK +RGKRLGF+ Sbjct: 5 YTITELTREFGISTRTLRFYEDEGLIAPVRRG---RARLFRPSDRHLLKQIMRGKRLGFS 61 Query: 64 LSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEEC 119 ++EI ++I MY QL+ + +++ R L Q+R D++ TL E+ EE C Sbjct: 62 IAEIHEIIQMYRELPGETGQLKLLMKRVEEKRADLRQKRRDIDETLGELDQVEEAC 117 >mlr5623 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 150 Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Query: 6 ITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFTLS 65 I E+A+++ +T R +RFYED G+LNP+R+G R+Y R++ RLKL L G+++GF+L Sbjct: 24 IGEMAKKYGVTLRTLRFYEDKGLLNPQRDG---STRLYTRRDKARLKLILLGRKVGFSLR 80 Query: 66 EIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQLLTD 125 ++K ++D+Y+ QL+ L ++ +L++QR ++ ++E++ RQ+L + Sbjct: 81 DVKQMMDLYDPTGSNTKQLRLALDKSEKQLARLQKQRALIDDAINELSGSMSAVRQMLAE 140 >AF0673 [K] COG0789 Predicted transcriptional regulators Afu Archaeoglobus fulgidus Length = 130 Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 56/72 (77%), Gaps = 2/72 (2%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 YTI+ELA EF I+ R IR+YE+ G+LNP+R G R++ ++R +LKL LRG+RLGF+ Sbjct: 7 YTISELAREFEISTRTIRYYEEIGLLNPER--TPGNQRIFSRKDRAKLKLILRGRRLGFS 64 Query: 64 LSEIKDLIDMYE 75 L EI+++I+MY+ Sbjct: 65 LEEIREMIEMYD 76 >BMEII0467 [K] COG0789 Predicted transcriptional regulators Bme Brucella melitensis Length = 131 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 11/115 (9%) Query: 2 PTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLG 61 P + I +LA+EF +T RA+RFYED G+L P+R GV R+ + RL+L + G+R+G Sbjct: 12 PFFRIGDLAQEFGLTLRALRFYEDKGLLRPRRAGV---TRLCNLNDYARLRLVIFGRRIG 68 Query: 62 FTLSEIKDLIDMYE----SPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEI 112 FTL EI +LI ++E P A Q F+ L + LE+++ +++ T+ E+ Sbjct: 69 FTLGEITELIGLWEQGLADPGQLSALRQSFIAKLTE----LEKKKVEIDDTIDEL 119