BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0370.p (255 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0066 [E] COG0411 ABC-type branched-chain amino acid transpo... 194 2e-49 PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ... 193 3e-49 BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transpo... 190 3e-48 AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport... 189 5e-48 SMc03120 [E] COG0411 ABC-type branched-chain amino acid transpor... 186 4e-47 RSc2246 [E] COG0411 ABC-type branched-chain amino acid transport... 186 6e-47 SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ... 179 4e-45 RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport... 179 7e-45 DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 178 1e-44 mll7176 Non COG 174 1e-43 >BMEII0066 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 251 Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 151/247 (61%), Gaps = 1/247 (0%) Query: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 M++ IL + K +G + G+ L + G H+VIGPNGAGK+TLFH ++G + G Sbjct: 2 MTKDILVLDQLNKSFGPAHIIRGVNLAVRDGERHAVIGPNGAGKSTLFHLISGNFTPSSG 61 Query: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 SI +GEE+ L +KGLARSFQ+T++FP L+V EN+RLA R + W+ Sbjct: 62 SIRFQGEEIGGLTPAAVNRKGLARSFQITNIFPGLTVFENIRLAVMRRYKVQ-FTFWRPV 120 Query: 121 EQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 A + LL Q+ L A A ++LS+ +QR LE+GM +A P++I LDEP +GM Sbjct: 121 SSMRKVTAEVESLLEQVRLTARAYTLASQLSYSEQRSLEIGMTLASDPRLIILDEPMAGM 180 Query: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 ++ LI + ++ T++++EH+M +V ++DRI+V+ G+I+A G P EIR + R Sbjct: 181 SQEETDYTVGLIREITQNRTLMIVEHDMYVVFTLADRISVLVYGEIIATGTPKEIRENAR 240 Query: 241 VRRAYLG 247 VR AYLG Sbjct: 241 VREAYLG 247 >PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Pae Pseudomonas aeruginosa Length = 255 Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/257 (43%), Positives = 157/257 (61%), Gaps = 12/257 (4%) Query: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 MSRPIL+ +T R+G AVNG+ L +E V S+IGPNGAGKTT+F+ LTG T G Sbjct: 1 MSRPILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGG 60 Query: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGR-------APLAA 113 I ++GEE+ LPG++ +KG+ R+FQ LF ++ ENL L AQ R A L Sbjct: 61 LIRLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENL-LVAQHRHLNTNFLAGLFK 119 Query: 114 LNPWKRAEQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFL 173 ++R+E+ A A L +++L A R+ L++GQQRRLE+ M RP+++ L Sbjct: 120 TPAFRRSER--EAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILML 177 Query: 174 DEPTSGMGIDDIAEMKQLIHGLRRDY--TVVLIEHNMDIVMDISDRITVMQLGQILAQGK 231 DEP +G+ + ++K LI LR ++ TV+LIEH+M +VM ISD I V+ G LA G Sbjct: 178 DEPAAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGT 237 Query: 232 PAEIRSDERVRRAYLGS 248 P +IR + V +AYLG Sbjct: 238 PEQIRDNPDVIKAYLGE 254 >BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 272 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 101/244 (41%), Positives = 149/244 (61%), Gaps = 1/244 (0%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 +L A + K +G F AV + LD+E VH++IGPNGAGKTT+F+ LT T G I + Sbjct: 27 VLSARGLGKSFGGFHAVKNVDLDVEHARVHALIGPNGAGKTTVFNLLTKFLQPTSGEITL 86 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFS 124 GE + R +KGL RSFQ+++ FP+L+V EN+++A Q R A W+ Sbjct: 87 LGETITKTDPARVARKGLVRSFQISATFPHLTVLENVKVALQ-RPNGLATQFWRSLSALD 145 Query: 125 AACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDD 184 A A ELL ++ L A+LS+G++R LE+ +A PKV+ LDEP +GMG +D Sbjct: 146 WLDAQAVELLERVGLADARHALAADLSYGRKRALEIATTLALDPKVLLLDEPLAGMGHED 205 Query: 185 IAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRA 244 + + LI + +D V+++EHN+ +V DI+ +TV+Q G+ILA G A + DERVR A Sbjct: 206 VHTIAALITDVAKDRAVLMVEHNLKVVADIAHHVTVLQRGEILASGDYATVSKDERVRTA 265 Query: 245 YLGS 248 Y+G+ Sbjct: 266 YMGT 269 >AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 153/246 (62%), Gaps = 1/246 (0%) Query: 3 RPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSI 62 R +L A +TK +G F AV + LD+ VH++IGPNGAGKTT+F+ LT T G+I Sbjct: 21 RVVLSARGLTKTFGAFAAVKNVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTGGAI 80 Query: 63 LVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQ 122 G ++ P ++ + GL RSFQ++++FP+L+V EN+R+A Q R A W Sbjct: 81 TFMGTDITKTPPDKVARLGLVRSFQISAVFPHLTVLENVRVALQ-RPNSLATQFWLPLSS 139 Query: 123 FSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 A A+EL++ + L A+LS+G++R LE+ +A PKV+ LDEP +GMG Sbjct: 140 LDRLNARAEELISMVGLTREKNALAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGG 199 Query: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 +D++ + +LI + + V+++EHN+ +V DI +TV+Q G+ILA+G A + +D RVR Sbjct: 200 EDVSHVAELIREVAKTRAVLMVEHNLKVVADICHHVTVLQRGEILAEGDYAAVSADPRVR 259 Query: 243 RAYLGS 248 AY+G+ Sbjct: 260 TAYMGT 265 >SMc03120 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 262 Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 3 RPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSI 62 R +L A + + +G FTAV + LD+ VH++IGPNGAGKTT+F+ LT T G+I Sbjct: 13 RVVLSARGLRRDFGGFTAVKDVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTHGTI 72 Query: 63 LVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQ 122 + GE++ ++ + GL RSFQ++++FP+L+V +N+R+A Q R A WK Sbjct: 73 TLLGEDITRTAPDKVARMGLVRSFQISAVFPHLTVLDNVRVALQ-RPNRLATQFWKSLSS 131 Query: 123 FSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 A++L+ + L A A+LS+G++R LE+ +A PKV+ LDEP +GMG Sbjct: 132 LDTLNGKAEQLIRSVGLDKEANAVAADLSYGRKRVLEIATTLALEPKVLLLDEPMAGMGH 191 Query: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 +D+ + ++I + R+ V+++EHN+ +V + +TV+Q G+ILA+G A + D RVR Sbjct: 192 EDVGMVAEIIREVARERAVLMVEHNLSVVATLCHHVTVLQRGEILAEGDYATVSEDPRVR 251 Query: 243 RAYLGS 248 AY+G+ Sbjct: 252 TAYMGT 257 >RSc2246 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 152/252 (60%), Gaps = 7/252 (2%) Query: 4 PILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSIL 63 P L ++KR+G F A I+L G H++IGPNGAGKTT + LTG T G + Sbjct: 10 PTLSTHGLSKRWGGFHANADISLTFAPGAHHALIGPNGAGKTTFINLLTGAFAPTAGQVR 69 Query: 64 VEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQF 123 ++G+++ L ++RV++G+ R+FQ+ +LFP L+V E++ LA R + W Sbjct: 70 LDGDDITRLSAHQRVKRGITRTFQINTLFPGLTVLESVMLAIFERTGAS----WHWHRTV 125 Query: 124 SAACALADE---LLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 +A A DE LL +L L A A L +G+QR LE+ +A+A P+++ LDEP +G+ Sbjct: 126 AAHTAARDEAMALLGRLQLGADASSPTHALPYGKQRLLEIALALATLPRILLLDEPAAGI 185 Query: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 + AE+ ++I GL RD T++ IEH+M++V ++RI+V+ G++L +G P EI +D R Sbjct: 186 PAGESAELFEVIAGLPRDITILFIEHDMNLVFRFAERISVLVAGRVLTEGTPQEIAADPR 245 Query: 241 VRRAYLGSMITG 252 VR YLG G Sbjct: 246 VREVYLGEAAHG 257 >SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 254 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 155/253 (61%), Gaps = 14/253 (5%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 +L+ +TK +G TAV +TL++ G + +IGPNGAGKTTLF+ LTG +EG++ + Sbjct: 3 LLEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTL 62 Query: 65 EGEEVAHLPGNRRVQK----GLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 +G HL + K GL R+FQ LF +L+V +N+ +A + R Sbjct: 63 DG----HLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRL 118 Query: 121 EQFSAA----CALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEP 176 F + A A ELL L A+ LS+GQQRRLE+ A+A PK++FLDEP Sbjct: 119 PAFYKSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRRLEIVRALATEPKILFLDEP 178 Query: 177 TSGMGIDDIAEMKQLIHGLRRDY--TVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAE 234 +GM + AE+ +LI ++ ++ T++LIEH+M++VM++++RI V++ G+++AQG P E Sbjct: 179 AAGMNPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDE 238 Query: 235 IRSDERVRRAYLG 247 I++++RV AYLG Sbjct: 239 IKTNKRVIEAYLG 251 >RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 256 Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 152/244 (62%), Gaps = 1/244 (0%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 IL+ +TK + FTAV+ + L + G++H++IGPNGAGKTT F+ LT T G+IL Sbjct: 6 ILETRGLTKAFKGFTAVSDVNLRVRRGSIHALIGPNGAGKTTCFNLLTKFLVPTRGTILF 65 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFS 124 G ++ + ++G+ RSFQ++++FP+LSV EN+R+ Q R A W+ + + Sbjct: 66 NGVDITPERPAQIARRGVIRSFQISAVFPHLSVLENVRIGLQ-RQLGTAYAFWRSEKTLA 124 Query: 125 AACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDD 184 A +LL Q+ L A EL +G++R LE+ +A P+++ LDEPT GMG +D Sbjct: 125 VLNDRAMQLLDQVGLTPFAGTVTVELPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 184 Query: 185 IAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRA 244 + + +LI + T++++EHNM++V I+D+ITV+Q GQILA+G ++ + +V A Sbjct: 185 VDRVTELIQRVAEGRTILMVEHNMNVVSSIADKITVLQRGQILAEGPYEDVSKNPQVMEA 244 Query: 245 YLGS 248 Y+G+ Sbjct: 245 YMGT 248 >DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 271 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 148/251 (58%), Gaps = 5/251 (1%) Query: 4 PILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSIL 63 PIL+ N K++G AVN ++ D+ AG + +IGPNGAGK+T+F+ +TG P T G++ Sbjct: 22 PILKVRNAVKQFGGLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGVNPATSGTVE 81 Query: 64 VEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAP---LAALNPWKRA 120 V G + LP + G+AR+FQ LFP LS+ EN + R L ++ +R Sbjct: 82 VLGHDAGRLPARAIHRLGVARTFQHVKLFPELSLLENTMMGGYARGQAGLLRSMLHLERG 141 Query: 121 EQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 E+ +A LA L ++ L A L+ GQQR LE+ A+ P + LDEP +G+ Sbjct: 142 EE-AALQGLALTQLERVGLSEQAYEQAGNLALGQQRLLEIARALVADPSFLLLDEPAAGL 200 Query: 181 GIDDIAEMKQLIHGLRRD-YTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDE 239 + E+ L+ LR + T++++EH+MD+VM++ DR+ VM GQ LAQG P ++RS+ Sbjct: 201 RFGEKQELATLLRKLRDEGVTILIVEHDMDLVMNLVDRLVVMNSGQELAQGSPQQVRSNP 260 Query: 240 RVRRAYLGSMI 250 VR AYLG+ + Sbjct: 261 AVREAYLGAEV 271 >mll7176 Non COG Length = 266 Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/255 (39%), Positives = 147/255 (57%), Gaps = 17/255 (6%) Query: 4 PILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSIL 63 P+L A +V +R+G AVN ++ D++AG + +IGPNGAGKTT+F L G+ + G IL Sbjct: 15 PVLTARHVVRRFGGLVAVNDVSFDVKAGEILGLIGPNGAGKTTMFDLLAGSILPSSGDIL 74 Query: 64 VEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAAL----NPWKR 119 + G V+ + R+ +GL R+FQ+ PNL++ EN+ LAAQG+A L PW+ Sbjct: 75 INGAPVSGEAAHLRIGRGLGRTFQIPRPLPNLTLIENIMLAAQGQAGETLLANFVTPWRV 134 Query: 120 AEQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSG 179 A Q AA A A +LL ++L +A LS GQ++ LE+ M P +I LDEP +G Sbjct: 135 AAQEKAARAKALDLLELVTLTHLAHEPARVLSGGQRKLLELARVMMADPAIILLDEPAAG 194 Query: 180 MG-------IDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKP 232 + ID I ++ R T +LIEHN+D+V + R+ VM GQ+L++G Sbjct: 195 VNATLLEVIIDRIRDINA------RGITFLLIEHNIDMVTRLCHRVLVMASGQLLSEGTA 248 Query: 233 AEIRSDERVRRAYLG 247 E+ D RV AYLG Sbjct: 249 EEVARDPRVIEAYLG 263